Wall clock time and date at job start Tue Mar 31 2020 13:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47146 * 2 1 4 4 C 1.34776 * 119.99845 * 84.59221 * 3 2 1 5 5 C 1.50696 * 120.00021 * 4.84029 * 4 3 2 6 6 O 1.21279 * 119.99652 * 184.83740 * 4 3 2 7 7 C 1.39569 * 119.99734 * 264.59028 * 3 2 1 8 8 C 1.39029 * 119.62808 * 5.00281 * 7 3 2 9 9 C 1.38294 * 119.18122 * 179.97438 * 8 7 3 10 10 C 1.39380 * 118.43279 * 359.97438 * 9 8 7 11 11 N 1.40150 * 120.41250 * 179.97438 * 10 9 8 12 12 C 1.34781 * 120.00202 * 325.05814 * 11 10 9 13 13 O 1.21592 * 119.99987 * 4.49878 * 12 11 10 14 14 N 1.34773 * 119.99921 * 184.50242 * 12 11 10 15 15 C 1.46501 * 120.00135 * 359.97438 * 14 12 11 16 16 C 1.46497 * 120.00020 * 180.02562 * 14 12 11 17 17 C 1.50699 * 109.47489 * 89.99878 * 16 14 12 18 18 H 1.08002 * 119.99726 * 359.97438 * 17 16 14 19 19 C 1.37880 * 120.00173 * 180.02562 * 17 16 14 20 20 N 1.31508 * 119.99757 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99999 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47106 * 59.99861 * 21 19 17 23 23 H 1.48498 * 109.47101 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47053 * 300.00227 * 21 19 17 25 25 C 1.38677 * 119.17419 * 0.02562 * 10 9 8 26 26 N 1.31917 * 120.75118 * 359.73510 * 25 10 9 27 27 H 1.08994 * 109.46723 * 300.00204 * 1 2 3 28 28 H 1.09001 * 109.46884 * 60.00379 * 1 2 3 29 29 H 1.08998 * 109.46997 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47188 * 240.00058 * 2 1 3 31 31 H 1.08998 * 109.47136 * 120.00080 * 2 1 3 32 32 H 1.09002 * 109.47062 * 4.92524 * 5 4 3 33 33 H 1.08998 * 109.46895 * 124.92585 * 5 4 3 34 34 H 1.09003 * 109.47092 * 244.92352 * 5 4 3 35 35 H 1.08004 * 120.40648 * 359.95500 * 8 7 3 36 36 H 1.08000 * 120.78163 * 180.02562 * 9 8 7 37 37 H 0.97007 * 119.99879 * 145.05037 * 11 10 9 38 38 H 1.08999 * 109.47224 * 89.99991 * 15 14 12 39 39 H 1.09000 * 109.47300 * 210.00087 * 15 14 12 40 40 H 1.08998 * 109.47212 * 329.99839 * 15 14 12 41 41 H 1.08996 * 109.47169 * 210.00137 * 16 14 12 42 42 H 1.09003 * 109.47085 * 330.00128 * 16 14 12 43 43 H 0.97004 * 119.99886 * 180.02562 * 20 19 17 44 44 H 1.08001 * 119.62641 * 179.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1393 2.0532 1.1620 5 6 1.8771 1.3510 2.4693 6 8 2.4592 3.2230 1.1555 7 6 2.3584 2.0011 -1.2034 8 6 2.1329 1.3394 -2.4051 9 6 2.4729 1.9625 -3.5920 10 6 3.0314 3.2382 -3.5356 11 7 3.3918 3.9076 -4.7130 12 6 3.8760 3.2133 -5.7618 13 8 3.9236 1.9991 -5.7172 14 7 4.3073 3.8647 -6.8599 15 6 4.2495 5.3276 -6.9138 16 6 4.8330 3.1100 -8.0002 17 6 3.7074 2.7802 -8.9463 18 1 2.7010 3.1003 -8.7206 19 6 3.9622 2.0687 -10.0996 20 7 5.1877 1.6785 -10.3741 21 14 2.5668 1.6592 -11.2720 22 1 1.9424 2.9164 -11.7565 23 1 3.0998 0.8943 -12.4278 24 1 1.5490 0.8420 -10.5638 25 6 3.2271 3.8364 -2.2999 26 7 2.8865 3.2141 -1.1877 27 1 -0.3632 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6899 0.2935 2.2826 33 1 2.7456 1.4570 3.1193 34 1 1.0060 1.7945 2.9517 35 1 1.6979 0.3509 -2.4116 36 1 2.3086 1.4724 -4.5403 37 1 3.2927 4.8708 -4.7731 38 1 5.1795 5.7426 -6.5253 39 1 4.1121 5.6480 -7.9466 40 1 3.4137 5.6807 -6.3097 41 1 5.5802 3.7100 -8.5196 42 1 5.2912 2.1870 -7.6448 43 1 5.3671 1.1783 -11.1856 44 1 3.6598 4.8246 -2.2476 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596984004.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:45 Heat of formation + Delta-G solvation = 10.338418 kcal Electronic energy + Delta-G solvation = -26663.721271 eV Core-core repulsion = 22810.972125 eV Total energy + Delta-G solvation = -3852.749146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.10209 -39.98926 -38.67298 -36.44824 -35.13182 -34.45489 -32.65182 -31.94884 -31.31331 -30.35259 -28.55745 -27.53392 -25.80438 -24.52793 -23.81480 -22.92063 -22.19523 -20.11206 -19.32922 -18.10605 -17.65780 -17.22445 -16.75097 -16.53983 -15.87049 -15.48031 -15.18486 -14.93036 -14.73700 -14.28151 -14.04365 -14.01823 -13.74361 -13.26746 -13.23392 -13.06870 -12.85578 -12.71507 -12.54272 -12.31155 -12.19506 -12.04385 -11.92919 -11.46577 -11.23334 -10.96564 -10.83198 -10.59609 -10.28636 -10.18758 -9.82450 -9.68084 -9.49289 -9.34363 -8.88566 -8.45911 -7.85283 -7.49202 -6.06752 -4.11837 1.13084 1.48202 2.48050 2.53353 3.15215 3.29935 3.34492 3.37731 3.71033 4.06678 4.14720 4.35761 4.42459 4.49114 4.63203 4.74004 4.80589 4.95893 4.97944 5.10392 5.11907 5.19462 5.27238 5.29692 5.36698 5.47527 5.50540 5.63759 5.77220 5.82797 5.85514 6.09249 6.27050 6.31585 6.56802 6.72762 6.95178 7.11206 7.30818 7.45339 7.61243 7.90556 7.93490 8.19569 8.20182 8.52009 8.88396 9.17385 9.53469 11.01082 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021619 B = 0.002689 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.835875 B =10411.470552 C =11291.731459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 N -0.549 5.549 4 C 0.501 3.499 5 C -0.176 4.176 6 O -0.483 6.483 7 C 0.328 3.672 8 C -0.186 4.186 9 C -0.051 4.051 10 C 0.104 3.896 11 N -0.690 5.690 12 C 0.698 3.302 13 O -0.571 6.571 14 N -0.611 5.611 15 C 0.083 3.917 16 C 0.259 3.741 17 C -0.528 4.528 18 H 0.056 0.944 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 C 0.096 3.904 26 N -0.460 5.460 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.137 0.863 36 H 0.159 0.841 37 H 0.403 0.597 38 H 0.046 0.954 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.035 0.965 42 H 0.046 0.954 43 H 0.264 0.736 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.981 -0.121 21.711 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.027 4.027 3 N -0.278 5.278 4 C 0.289 3.711 5 C -0.235 4.235 6 O -0.353 6.353 7 C 0.098 3.902 8 C -0.209 4.209 9 C -0.079 4.079 10 C 0.004 3.996 11 N -0.341 5.341 12 C 0.400 3.600 13 O -0.448 6.448 14 N -0.346 5.346 15 C -0.061 4.061 16 C 0.140 3.860 17 C -0.567 4.567 18 H 0.075 0.925 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.065 4.065 26 N -0.173 5.173 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.155 0.845 36 H 0.176 0.824 37 H 0.240 0.760 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.461 -0.040 22.376 23.587 hybrid contribution -0.944 -0.207 -1.678 1.937 sum -8.406 -0.248 20.698 22.341 Atomic orbital electron populations 1.22246 0.94887 1.02940 1.03189 1.21876 0.95211 0.81007 1.04611 1.45746 1.63087 1.14368 1.04576 1.20991 0.77468 0.87397 0.85211 1.22044 1.05003 1.01790 0.94693 1.90816 1.42504 1.15497 1.86474 1.18382 0.96422 0.90233 0.85176 1.21492 1.06545 1.02015 0.90873 1.21716 0.92759 0.93952 0.99485 1.18580 0.99533 0.94867 0.86598 1.42861 1.67913 1.10716 1.12640 1.15926 0.78691 0.85487 0.79903 1.90872 1.61355 1.11450 1.81087 1.47503 1.64746 1.06123 1.16225 1.21609 0.99631 0.81524 1.03356 1.19262 0.94165 0.91880 0.80666 1.21406 0.94645 1.35576 1.05089 0.92533 1.24928 0.95784 0.95469 0.97876 1.69918 1.19122 1.38146 1.26150 0.86553 0.82201 0.78485 0.80128 1.20279 1.21164 1.20194 1.22382 0.98395 1.00450 0.85259 1.67513 1.12418 1.07636 1.29713 0.92108 0.91690 0.90719 0.88854 0.88950 0.89947 0.88626 0.88649 0.84530 0.82370 0.75954 0.93499 0.90213 0.93102 0.94703 0.93639 0.92611 0.82573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.20 37.16 0.38 -0.60 16 2 C 0.10 0.63 5.27 -4.04 -0.02 0.61 16 3 N -0.55 -6.17 2.70 -115.34 -0.31 -6.48 16 4 C 0.50 5.95 7.70 -10.99 -0.08 5.87 16 5 C -0.18 -1.12 9.90 36.00 0.36 -0.76 16 6 O -0.48 -7.99 15.39 5.56 0.09 -7.91 16 7 C 0.33 4.71 7.31 -154.58 -1.13 3.58 16 8 C -0.19 -2.52 9.20 -39.27 -0.36 -2.88 16 9 C -0.05 -0.82 8.80 -39.14 -0.34 -1.17 16 10 C 0.10 1.65 6.32 -83.47 -0.53 1.12 16 11 N -0.69 -11.03 5.23 -14.09 -0.07 -11.10 16 12 C 0.70 14.56 8.14 -86.92 -0.71 13.85 16 13 O -0.57 -14.11 13.40 5.28 0.07 -14.04 16 14 N -0.61 -12.74 2.86 -188.74 -0.54 -13.28 16 15 C 0.08 1.26 10.24 59.85 0.61 1.87 16 16 C 0.26 6.68 5.16 -5.20 -0.03 6.65 16 17 C -0.53 -14.72 9.39 -34.44 -0.32 -15.05 16 18 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 21 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 25 C 0.10 1.42 11.11 -17.35 -0.19 1.23 16 26 N -0.46 -7.49 7.91 -12.19 -0.10 -7.58 16 27 H 0.06 0.33 7.99 -51.93 -0.41 -0.09 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.59 6.09 -51.93 -0.32 0.28 16 31 H 0.09 0.37 5.96 -51.93 -0.31 0.06 16 32 H 0.08 0.31 5.38 -51.93 -0.28 0.03 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.14 1.44 6.15 -52.48 -0.32 1.11 16 36 H 0.16 2.89 6.32 -52.49 -0.33 2.56 16 37 H 0.40 5.05 6.52 -40.82 -0.27 4.79 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 40 H 0.05 0.61 6.30 -51.93 -0.33 0.28 16 41 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 42 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.16 1.90 8.06 -52.49 -0.42 1.47 16 LS Contribution 364.99 15.07 5.50 5.50 Total: -1.00 -37.37 364.99 -7.99 -45.36 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.87 Total: 2.55 kcal Atomic # 6 Polarization: 18.43 SS G_CDS: -2.47 Total: 15.97 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: -0.28 Total: -63.98 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: 0.16 Total: -21.95 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.37 -7.99 -45.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596984004.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.703 kcal (2) G-P(sol) polarization free energy of solvation -37.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds