Wall clock time and date at job start Tue Mar 31 2020 13:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46788 * 2 1 4 4 C 1.34781 * 119.99944 * 84.18980 * 3 2 1 5 5 C 1.50700 * 119.99950 * 4.81892 * 4 3 2 6 6 O 1.21281 * 119.99521 * 184.82271 * 4 3 2 7 7 C 1.39573 * 119.99876 * 264.19082 * 3 2 1 8 8 C 1.39021 * 119.62145 * 4.99559 * 7 3 2 9 9 C 1.38307 * 119.17592 * 179.97438 * 8 7 3 10 10 C 1.39374 * 118.43249 * 0.02562 * 9 8 7 11 11 N 1.40152 * 120.41397 * 179.97438 * 10 9 8 12 12 C 1.34784 * 119.99708 * 32.80815 * 11 10 9 13 13 O 1.21594 * 120.00150 * 5.17851 * 12 11 10 14 14 N 1.34775 * 119.99897 * 185.18306 * 12 11 10 15 15 C 1.46499 * 120.00238 * 180.02562 * 14 12 11 16 16 C 1.52993 * 109.47524 * 179.97438 * 15 14 12 17 17 C 1.50698 * 109.47295 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99851 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00142 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99792 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00048 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47224 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47294 * 119.99545 * 21 19 17 24 24 H 1.48505 * 109.46958 * 239.99333 * 21 19 17 25 25 C 1.38684 * 119.17732 * 359.97438 * 10 9 8 26 26 N 1.31911 * 120.74709 * 359.74724 * 25 10 9 27 27 H 1.09000 * 109.47466 * 299.99954 * 1 2 3 28 28 H 1.09003 * 109.47032 * 60.00511 * 1 2 3 29 29 H 1.09004 * 109.46694 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47466 * 240.00046 * 2 1 3 31 31 H 1.09003 * 109.47032 * 119.99489 * 2 1 3 32 32 H 1.08997 * 109.47185 * 4.27111 * 5 4 3 33 33 H 1.09001 * 109.46775 * 124.26814 * 5 4 3 34 34 H 1.09005 * 109.47184 * 244.26835 * 5 4 3 35 35 H 1.07999 * 120.41627 * 359.95843 * 8 7 3 36 36 H 1.07997 * 120.77874 * 180.02562 * 9 8 7 37 37 H 0.96998 * 120.00690 * 212.81304 * 11 10 9 38 38 H 0.97000 * 119.99866 * 359.97438 * 14 12 11 39 39 H 1.09007 * 109.46663 * 299.99800 * 15 14 12 40 40 H 1.08998 * 109.47254 * 59.98948 * 15 14 12 41 41 H 1.09001 * 109.47016 * 300.00136 * 16 15 14 42 42 H 1.09004 * 109.47048 * 59.99389 * 16 15 14 43 43 H 0.96995 * 119.99817 * 180.02562 * 20 19 17 44 44 H 1.08003 * 119.62671 * 179.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1314 2.0560 1.1612 5 6 1.8601 1.3569 2.4684 6 8 2.4516 3.2258 1.1541 7 6 2.3662 1.9984 -1.2025 8 6 2.1487 1.3338 -2.4041 9 6 2.4964 1.9542 -3.5903 10 6 3.0554 3.2297 -3.5331 11 7 3.4235 3.8964 -4.7096 12 6 2.7179 3.7047 -5.8418 13 8 1.7075 3.0284 -5.8213 14 7 3.1321 4.2624 -6.9967 15 6 2.3649 4.0545 -8.2272 16 6 3.0456 4.7901 -9.3832 17 6 2.2566 4.5757 -10.6491 18 1 1.3596 3.9745 -10.6310 19 6 2.6805 5.1462 -11.8306 20 7 3.7731 5.8779 -11.8527 21 14 1.7021 4.8810 -13.3996 22 1 0.5228 4.0266 -13.1092 23 1 1.2460 6.1924 -13.9262 24 1 2.5600 4.2128 -14.4109 25 6 3.2428 3.8309 -2.2975 26 7 2.8942 3.2115 -1.1863 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.6625 0.3014 2.2818 33 1 2.7288 1.4544 3.1196 34 1 0.9929 1.8095 2.9494 35 1 1.7139 0.3453 -2.4112 36 1 2.3385 1.4619 -4.5384 37 1 4.1862 4.4958 -4.7092 38 1 3.9380 4.8021 -7.0129 39 1 2.3191 2.9887 -8.4511 40 1 1.3546 4.4417 -8.0953 41 1 3.0911 5.8559 -9.1591 42 1 4.0560 4.4032 -9.5153 43 1 4.0711 6.2795 -12.6837 44 1 3.6757 4.8190 -2.2447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596984034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:48 Heat of formation + Delta-G solvation = -9.717887 kcal Electronic energy + Delta-G solvation = -25801.248379 eV Core-core repulsion = 21947.629527 eV Total energy + Delta-G solvation = -3853.618852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.27949 -40.20144 -38.86422 -36.59054 -35.28712 -34.57216 -32.95858 -32.18407 -31.51951 -30.49759 -29.71739 -28.16860 -24.91562 -24.69845 -23.66172 -22.73726 -21.22567 -20.80079 -19.92142 -18.49138 -17.92877 -17.39429 -17.26174 -16.36273 -16.05695 -15.65677 -15.38715 -15.10661 -14.70956 -14.54141 -14.26461 -14.18620 -13.92807 -13.66564 -13.54300 -13.27858 -13.18547 -12.93322 -12.69123 -12.46953 -12.31991 -12.16102 -11.58319 -11.23951 -11.21018 -11.02897 -10.65334 -10.41359 -10.39086 -10.17501 -9.97597 -9.65195 -9.59649 -9.31642 -9.07635 -8.63965 -8.42307 -7.76961 -6.12721 -4.15582 0.93913 1.27002 2.33172 2.40520 2.80737 3.26442 3.32300 3.34317 3.39325 3.84892 4.01926 4.30190 4.32265 4.44043 4.53229 4.62136 4.68973 4.78408 4.83620 4.89661 5.01841 5.03930 5.18270 5.24652 5.26612 5.41189 5.45310 5.61327 5.72981 5.98203 6.06640 6.21557 6.30752 6.35355 6.68239 6.73225 6.82478 6.90518 7.03934 7.50275 7.57257 7.79820 7.85892 8.04283 8.13543 8.27004 8.73793 8.90764 9.49505 10.98914 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035223 B = 0.001943 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.753922 B =14404.001005 C =14994.092190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.096 3.904 3 N -0.550 5.550 4 C 0.501 3.499 5 C -0.176 4.176 6 O -0.481 6.481 7 C 0.332 3.668 8 C -0.186 4.186 9 C -0.052 4.052 10 C 0.101 3.899 11 N -0.686 5.686 12 C 0.697 3.303 13 O -0.582 6.582 14 N -0.730 5.730 15 C 0.139 3.861 16 C 0.012 3.988 17 C -0.521 4.521 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.101 3.899 26 N -0.458 5.458 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.138 0.862 36 H 0.153 0.847 37 H 0.408 0.592 38 H 0.396 0.604 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.262 0.738 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.919 -12.440 27.058 29.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.026 4.026 3 N -0.279 5.279 4 C 0.289 3.711 5 C -0.235 4.235 6 O -0.351 6.351 7 C 0.102 3.898 8 C -0.209 4.209 9 C -0.080 4.080 10 C 0.001 3.999 11 N -0.335 5.335 12 C 0.397 3.603 13 O -0.460 6.460 14 N -0.383 5.383 15 C 0.016 3.984 16 C -0.026 4.026 17 C -0.560 4.560 18 H 0.079 0.921 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.060 4.060 26 N -0.171 5.171 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.156 0.844 36 H 0.170 0.830 37 H 0.243 0.757 38 H 0.230 0.770 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.458 -11.893 27.740 30.217 hybrid contribution 0.111 0.050 -1.832 1.836 sum -1.348 -11.842 25.908 28.518 Atomic orbital electron populations 1.22259 0.94791 1.03022 1.03353 1.21877 0.95318 0.80892 1.04516 1.45787 1.63031 1.14413 1.04629 1.21026 0.77460 0.87369 0.85218 1.22046 1.05066 1.01803 0.94598 1.90827 1.42370 1.15435 1.86418 1.18403 0.95664 0.90457 0.85281 1.21460 1.06418 1.02239 0.90783 1.21495 0.95135 0.92252 0.99105 1.18536 1.02257 0.92541 0.86524 1.42623 1.33980 1.49243 1.07604 1.16072 0.82944 0.80947 0.80303 1.90902 1.25786 1.44278 1.85022 1.45583 1.30440 1.54487 1.07819 1.21679 0.94720 1.00724 0.81258 1.19342 0.96409 0.95683 0.91124 1.21070 1.10283 1.31923 0.92710 0.92131 1.25003 0.95121 0.94952 0.99260 1.69963 1.22789 1.33269 1.27220 0.86446 0.80104 0.78014 0.82941 1.19567 1.20925 1.20935 1.22413 0.98956 0.99201 0.85458 1.67545 1.12188 1.07655 1.29719 0.92019 0.91615 0.90658 0.88943 0.88896 0.89932 0.88567 0.88553 0.84395 0.82979 0.75667 0.77039 0.92485 0.92511 0.95867 0.95870 0.92871 0.82323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.82 10.19 37.16 0.38 -0.44 16 2 C 0.10 0.49 5.26 -4.04 -0.02 0.47 16 3 N -0.55 -5.35 2.70 -115.34 -0.31 -5.66 16 4 C 0.50 5.34 7.69 -10.98 -0.08 5.26 16 5 C -0.18 -0.93 9.85 36.01 0.35 -0.57 16 6 O -0.48 -7.44 15.39 5.56 0.09 -7.35 16 7 C 0.33 4.17 7.31 -154.58 -1.13 3.04 16 8 C -0.19 -2.09 9.20 -39.27 -0.36 -2.45 16 9 C -0.05 -0.69 8.76 -39.13 -0.34 -1.03 16 10 C 0.10 1.33 6.31 -83.46 -0.53 0.80 16 11 N -0.69 -8.68 5.37 -14.09 -0.08 -8.76 16 12 C 0.70 11.57 8.33 -86.91 -0.72 10.85 16 13 O -0.58 -11.67 14.04 5.28 0.07 -11.59 16 14 N -0.73 -12.17 5.56 -65.22 -0.36 -12.53 16 15 C 0.14 2.86 5.61 -4.05 -0.02 2.83 16 16 C 0.01 0.29 5.09 -27.89 -0.14 0.15 16 17 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 18 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -25.78 13.29 55.43 0.74 -25.05 16 21 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.10 1.29 11.11 -17.35 -0.19 1.10 16 26 N -0.46 -6.69 7.91 -12.19 -0.10 -6.79 16 27 H 0.06 0.29 7.94 -51.93 -0.41 -0.13 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.40 6.06 -51.93 -0.31 0.08 16 31 H 0.09 0.23 5.99 -51.93 -0.31 -0.08 16 32 H 0.08 0.21 5.39 -51.93 -0.28 -0.07 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.14 1.13 6.14 -52.49 -0.32 0.81 16 36 H 0.15 2.20 6.48 -52.49 -0.34 1.86 16 37 H 0.41 3.76 8.84 -40.82 -0.36 3.39 16 38 H 0.40 5.56 8.49 -40.82 -0.35 5.22 16 39 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 44 H 0.16 1.65 8.06 -52.48 -0.42 1.22 16 LS Contribution 368.96 15.07 5.56 5.56 Total: -1.00 -36.61 368.96 -8.67 -45.28 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.03 Total: 3.75 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -3.23 Total: 7.00 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -0.11 Total: -58.78 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.16 Total: -18.95 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.61 -8.67 -45.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596984034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.566 kcal (2) G-P(sol) polarization free energy of solvation -36.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds