Wall clock time and date at job start Tue Mar 31 2020 13:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47028 * 2 1 4 4 C 1.42901 * 113.99975 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47387 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47280 * 180.02562 * 5 4 3 7 7 C 1.34258 * 125.75684 * 124.99953 * 6 5 4 8 8 C 1.38040 * 107.41927 * 180.02562 * 7 6 5 9 9 C 1.47433 * 126.41692 * 180.02562 * 8 7 6 10 10 O 1.21606 * 119.99806 * 325.63086 * 9 8 7 11 11 N 1.34777 * 120.00274 * 145.63048 * 9 8 7 12 12 C 1.46499 * 119.99845 * 185.35588 * 11 9 8 13 13 C 1.50705 * 109.47111 * 90.00179 * 12 11 9 14 14 H 1.08001 * 119.99525 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99628 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00575 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99383 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47589 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46940 * 120.00048 * 17 15 13 20 20 H 1.48502 * 109.46917 * 239.99836 * 17 15 13 21 21 C 1.46500 * 119.99732 * 5.35507 * 11 9 8 22 22 C 1.53004 * 109.46942 * 95.85797 * 21 11 9 23 23 C 1.47198 * 109.47144 * 175.32496 * 22 21 11 24 24 N 9.58374 * 146.47945 * 315.08080 * 3 1 2 25 25 C 1.41287 * 107.17010 * 359.97438 * 8 7 6 26 26 N 1.30454 * 108.02468 * 359.72234 * 25 8 7 27 27 H 1.09001 * 109.47348 * 300.00228 * 1 2 3 28 28 H 1.09000 * 109.46923 * 59.99798 * 1 2 3 29 29 H 1.08996 * 109.47054 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47393 * 240.00323 * 2 1 3 31 31 H 1.09002 * 109.47425 * 120.00325 * 2 1 3 32 32 H 1.09001 * 109.47099 * 59.99654 * 4 3 2 33 33 H 1.09008 * 109.47178 * 300.00046 * 4 3 2 34 34 H 1.09001 * 109.47144 * 300.00207 * 5 4 3 35 35 H 1.09000 * 109.46998 * 59.99843 * 5 4 3 36 36 H 1.08001 * 126.29201 * 0.02562 * 7 6 5 37 37 H 1.08998 * 109.47049 * 209.99990 * 12 11 9 38 38 H 1.09000 * 109.47124 * 330.00311 * 12 11 9 39 39 H 0.96997 * 119.99804 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.46593 * 215.85029 * 21 11 9 41 41 H 1.08996 * 109.47184 * 335.85349 * 21 11 9 42 42 H 1.08997 * 109.46693 * 295.32076 * 22 21 11 43 43 H 1.08999 * 109.47133 * 55.32144 * 22 21 11 44 44 H 1.07997 * 125.98946 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 7 5.2858 3.0541 -0.0011 7 6 6.0178 3.7396 -0.8937 8 6 7.3440 3.5940 -0.5396 9 6 8.5051 4.1763 -1.2370 10 8 8.4892 4.2986 -2.4468 11 7 9.5843 4.5730 -0.5337 12 6 10.6883 5.2580 -1.2106 13 6 10.4435 6.7449 -1.1924 14 1 9.5542 7.1400 -0.7238 15 6 11.3548 7.6007 -1.7738 16 7 12.4379 7.1196 -2.3438 17 14 11.0509 9.4437 -1.7518 18 1 9.7708 9.7262 -1.0542 19 1 12.1632 10.1202 -1.0372 20 1 10.9777 9.9500 -3.1459 21 6 9.6531 4.3192 0.9075 22 6 10.4388 3.0312 1.1615 23 6 10.6046 2.8353 2.6109 24 7 10.7286 2.6903 3.7371 25 6 7.3803 2.7834 0.6170 26 7 6.1527 2.4738 0.9316 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8332 0.9767 -0.8908 33 1 3.8340 0.9764 0.8892 34 1 3.4222 3.4225 -0.8894 35 1 3.4230 3.4214 0.8906 36 1 5.6386 4.3017 -1.7344 37 1 11.6231 5.0374 -0.6954 38 1 10.7519 4.9129 -2.2425 39 1 13.0791 7.7218 -2.7525 40 1 10.1537 5.1531 1.3996 41 1 8.6443 4.2142 1.3065 42 1 9.8956 2.1853 0.7404 43 1 11.4190 3.1045 0.6903 44 1 8.2683 2.4781 1.1504 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598894067.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:25 Heat of formation + Delta-G solvation = 32.032528 kcal Electronic energy + Delta-G solvation = -26117.690473 eV Core-core repulsion = 22265.882055 eV Total energy + Delta-G solvation = -3851.808418 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.44178 -38.87830 -38.43503 -36.76470 -35.19390 -34.25650 -32.85511 -31.71063 -30.87709 -30.33584 -28.91667 -27.10079 -24.09954 -24.04425 -23.30045 -23.18771 -21.42770 -20.80992 -18.85661 -17.76468 -17.40610 -16.86063 -16.63107 -16.42595 -16.09536 -15.60381 -15.35173 -14.89201 -14.62084 -14.42243 -14.25108 -13.92348 -13.87435 -13.43101 -13.01300 -12.86738 -12.73908 -12.69490 -12.38730 -12.31712 -12.09800 -12.03078 -11.68602 -11.61963 -11.58902 -11.25939 -10.97779 -10.90498 -10.86128 -10.62522 -10.17568 -10.07298 -9.67693 -9.57006 -9.10409 -8.56517 -8.45520 -7.78554 -6.07265 -4.11618 1.64510 2.09256 2.34444 2.75145 2.81135 3.29078 3.29774 3.36983 3.39999 3.62413 3.80554 4.21962 4.35067 4.44097 4.48276 4.60438 4.75203 4.78773 4.81882 4.86638 4.93890 5.04002 5.12519 5.18232 5.19618 5.26487 5.31244 5.34517 5.46050 5.49822 5.54576 5.67479 5.75102 5.88734 6.16273 6.37881 6.64455 6.79406 7.00537 7.40321 7.47103 7.52020 7.60791 7.89641 8.19618 8.31674 8.86984 9.04106 9.53959 11.00781 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.002836 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.898475 B = 9870.966844 C =11319.092526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.389 6.389 4 C 0.053 3.947 5 C 0.137 3.863 6 N -0.366 5.366 7 C 0.119 3.881 8 C -0.274 4.274 9 C 0.586 3.414 10 O -0.538 6.538 11 N -0.590 5.590 12 C 0.244 3.756 13 C -0.527 4.527 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.893 5.893 17 Si 0.896 3.104 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.108 3.892 22 C -0.057 4.057 23 C 0.213 3.787 24 N -0.441 5.441 25 C 0.067 3.933 26 N -0.301 5.301 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.187 0.813 37 H 0.036 0.964 38 H 0.049 0.951 39 H 0.263 0.737 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.123 0.877 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.899 -13.103 4.751 22.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.308 6.308 4 C -0.025 4.025 5 C 0.015 3.985 6 N -0.147 5.147 7 C -0.030 4.030 8 C -0.288 4.288 9 C 0.373 3.627 10 O -0.415 6.415 11 N -0.320 5.320 12 C 0.126 3.874 13 C -0.566 4.566 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.724 3.276 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.019 4.019 22 C -0.098 4.098 23 C -0.105 4.105 24 N -0.119 5.119 25 C -0.120 4.120 26 N -0.121 5.121 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.204 0.796 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.126 0.874 43 H 0.141 0.859 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -18.581 -13.668 6.494 23.963 hybrid contribution 0.647 1.339 -0.968 1.775 sum -17.934 -12.328 5.526 22.453 Atomic orbital electron populations 1.21753 0.93446 1.02434 1.03262 1.22490 0.95660 0.83090 1.00442 1.87782 1.20135 1.27275 1.95622 1.22608 0.81695 0.96080 1.02069 1.21420 0.74383 0.97118 1.05538 1.48228 1.06324 1.39150 1.21047 1.22926 0.90763 0.95056 0.94301 1.20579 0.94198 1.11723 1.02336 1.17177 0.81496 0.77694 0.86313 1.90763 1.81023 1.56171 1.13557 1.47986 1.20354 1.56896 1.06789 1.19374 0.82662 0.91392 0.94018 1.21470 1.06853 0.91282 1.37018 0.92276 1.24914 0.95033 0.99034 0.95046 1.69928 1.10765 1.35101 1.37409 0.86473 0.78120 0.85192 0.77816 1.19811 1.21019 1.20912 1.21563 1.00759 0.95431 0.84145 1.20012 1.05663 1.01461 0.82648 1.29325 0.93035 0.93057 0.95045 1.81469 1.09143 1.08944 1.12329 1.24491 0.95783 0.96560 0.95140 1.77114 1.00302 1.21180 1.13486 0.91736 0.91733 0.90927 0.93160 0.93109 0.92546 0.91550 0.87422 0.88559 0.79621 0.94616 0.93259 0.92746 0.88960 0.89597 0.87355 0.85882 0.79068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.43 16 2 C 0.06 0.40 6.66 37.16 0.25 0.65 16 3 O -0.39 -3.42 10.34 -35.23 -0.36 -3.78 16 4 C 0.05 0.45 6.12 37.16 0.23 0.68 16 5 C 0.14 1.15 6.86 -4.04 -0.03 1.13 16 6 N -0.37 -4.23 3.65 -60.81 -0.22 -4.45 16 7 C 0.12 1.53 11.39 -16.56 -0.19 1.34 16 8 C -0.27 -4.13 5.50 -105.07 -0.58 -4.70 16 9 C 0.59 11.24 7.59 -12.52 -0.10 11.14 16 10 O -0.54 -12.57 16.60 5.27 0.09 -12.48 16 11 N -0.59 -11.02 2.46 -176.32 -0.43 -11.46 16 12 C 0.24 5.76 5.22 -5.19 -0.03 5.73 16 13 C -0.53 -14.00 9.39 -34.44 -0.32 -14.33 16 14 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 17 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.11 1.51 4.87 -4.04 -0.02 1.49 16 22 C -0.06 -0.62 5.14 -29.52 -0.15 -0.77 16 23 C 0.21 2.66 15.42 -20.56 -0.32 2.34 16 24 N -0.44 -6.65 18.58 42.40 0.79 -5.87 16 25 C 0.07 0.87 9.46 -16.98 -0.16 0.71 16 26 N -0.30 -3.93 12.34 30.86 0.38 -3.55 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.11 0.70 8.06 -51.93 -0.42 0.28 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.19 2.02 8.06 -52.49 -0.42 1.60 16 37 H 0.04 0.83 8.02 -51.93 -0.42 0.41 16 38 H 0.05 1.32 7.35 -51.93 -0.38 0.94 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 41 H 0.09 1.11 4.70 -51.93 -0.24 0.86 16 42 H 0.11 0.97 6.48 -51.93 -0.34 0.63 16 43 H 0.12 1.33 8.09 -51.93 -0.42 0.91 16 44 H 0.19 2.07 4.04 -52.49 -0.21 1.86 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -34.16 381.65 -5.63 -39.79 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -6.20 Total: -2.03 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -1.13 Total: 6.57 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 1.25 Total: -49.93 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.28 Total: -16.26 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.16 -5.63 -39.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598894067.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.820 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds