Wall clock time and date at job start Tue Mar 31 2020 13:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42897 * 109.47090 * 2 1 4 4 C 1.42900 * 114.00209 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47405 * 180.02562 * 4 3 2 6 6 N 1.40090 * 126.03320 * 270.14993 * 5 4 3 7 7 C 1.30833 * 108.20356 * 180.22958 * 6 5 4 8 8 C 1.50698 * 125.89596 * 179.81481 * 7 6 5 9 9 C 1.39867 * 108.20636 * 359.78443 * 7 6 5 10 10 C 1.50696 * 126.04196 * 179.97438 * 9 7 6 11 11 C 1.50705 * 109.47187 * 270.02163 * 10 9 7 12 12 O 1.21294 * 119.99612 * 0.02562 * 11 10 9 13 13 N 1.34768 * 119.99986 * 180.02562 * 11 10 9 14 14 C 1.37095 * 119.99980 * 180.02562 * 13 11 10 15 15 H 1.08007 * 120.00171 * 20.21081 * 14 13 11 16 16 C 1.38959 * 120.00127 * 200.21333 * 14 13 11 17 17 N 1.31406 * 119.99855 * 21.43246 * 16 14 13 18 18 Si 1.86797 * 120.00059 * 201.43349 * 16 14 13 19 19 H 1.48500 * 109.47177 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47174 * 119.99810 * 18 16 14 21 21 H 1.48500 * 109.47307 * 239.99825 * 18 16 14 22 22 C 1.46503 * 120.00089 * 359.97438 * 13 11 10 23 23 C 1.47196 * 109.46911 * 83.95490 * 22 13 11 24 24 N 9.54616 * 109.45294 * 36.60619 * 2 1 3 25 25 C 1.34940 * 126.04300 * 89.99702 * 5 4 3 26 26 C 1.50697 * 126.12445 * 0.03477 * 25 5 4 27 27 H 1.08995 * 109.47649 * 300.00182 * 1 2 3 28 28 H 1.08999 * 109.46991 * 60.00380 * 1 2 3 29 29 H 1.09000 * 109.47041 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47649 * 239.99818 * 2 1 3 31 31 H 1.08999 * 109.46991 * 119.99620 * 2 1 3 32 32 H 1.08994 * 109.47200 * 59.99897 * 4 3 2 33 33 H 1.09006 * 109.47270 * 299.99932 * 4 3 2 34 34 H 1.09000 * 109.47408 * 269.96177 * 8 7 6 35 35 H 1.09006 * 109.47501 * 29.96456 * 8 7 6 36 36 H 1.09005 * 109.47390 * 149.96396 * 8 7 6 37 37 H 1.09001 * 109.47312 * 30.02154 * 10 9 7 38 38 H 1.08998 * 109.47380 * 150.02479 * 10 9 7 39 39 H 0.97003 * 120.00010 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.47010 * 203.95198 * 22 13 11 41 41 H 1.08999 * 109.47089 * 323.95307 * 22 13 11 42 42 H 1.08996 * 109.47720 * 269.68893 * 26 25 5 43 43 H 1.09007 * 109.47095 * 149.68805 * 26 25 5 44 44 H 1.08997 * 109.47285 * 29.69043 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 7 3.8086 2.8756 0.0011 6 7 4.0187 3.6729 -1.1314 7 6 4.3455 4.8746 -0.7303 8 6 4.6624 6.0478 -1.6215 9 6 4.3492 4.8826 0.6683 10 6 4.6715 6.0634 1.5474 11 6 6.1500 6.0843 1.8384 12 8 6.8711 5.2251 1.3769 13 7 6.6709 7.0576 2.6115 14 6 8.0160 7.0770 2.8758 15 1 8.7003 6.5419 2.2339 16 6 8.4990 7.7849 3.9696 17 7 7.6980 8.0754 4.9700 18 14 10.2869 8.3238 4.0179 19 1 10.9723 7.8766 2.7787 20 1 10.3554 9.8041 4.1141 21 1 10.9544 7.7196 5.1988 22 6 5.7999 8.0957 3.1684 23 6 5.1827 7.6037 4.4108 24 7 4.7092 7.2258 5.3675 25 6 4.0128 3.6424 1.0925 26 6 3.8939 3.1959 2.5269 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8340 0.9765 -0.8891 33 1 3.8333 0.9767 0.8909 34 1 5.7307 6.0619 -1.8375 35 1 4.1045 5.9574 -2.5536 36 1 4.3813 6.9729 -1.1181 37 1 4.3886 6.9841 1.0372 38 1 4.1182 5.9816 2.4829 39 1 8.0353 8.5693 5.7338 40 1 6.3890 8.9872 3.3836 41 1 5.0200 8.3408 2.4475 42 1 2.8737 3.3579 2.8746 43 1 4.5838 3.7708 3.1448 44 1 4.1384 2.1362 2.5991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601027311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:51 Heat of formation + Delta-G solvation = 33.619290 kcal Electronic energy + Delta-G solvation = -27166.681795 eV Core-core repulsion = 23314.942184 eV Total energy + Delta-G solvation = -3851.739611 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.14044 -38.69522 -38.19217 -35.75165 -34.34118 -33.71553 -32.60621 -31.79647 -31.39558 -28.94909 -28.61320 -27.35988 -26.08902 -24.79420 -23.75415 -23.14479 -20.06202 -19.35645 -18.65087 -17.83294 -17.28736 -16.63552 -16.40437 -16.28318 -16.09734 -14.86074 -14.40981 -14.33197 -14.08840 -13.98477 -13.70473 -13.26924 -13.02175 -12.96273 -12.88355 -12.85703 -12.57197 -12.53305 -12.10199 -12.07732 -11.95660 -11.78347 -11.61850 -11.55725 -11.42939 -11.32648 -11.15646 -11.09266 -10.55540 -10.35347 -10.25808 -10.16311 -9.98706 -9.20756 -8.84303 -8.57843 -7.96466 -7.89030 -6.45441 -3.95456 1.98817 2.45546 3.07493 3.11827 3.25137 3.31388 3.64281 3.69458 3.87937 4.03606 4.17473 4.47679 4.69851 4.73329 4.83455 4.90686 4.93297 4.99529 4.99874 5.15039 5.25297 5.26793 5.33816 5.54873 5.56459 5.58841 5.70463 5.74587 5.79149 5.83214 5.92830 6.03980 6.09581 6.14690 6.20806 6.40565 6.51518 6.55982 6.72662 7.02550 7.32290 7.51790 8.00029 8.04209 8.35284 8.77999 9.07879 9.26453 9.83874 10.60968 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019128 B = 0.003204 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.507420 B = 8737.172708 C = 9192.692479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.066 3.934 3 O -0.404 6.404 4 C 0.316 3.684 5 N -0.375 5.375 6 N -0.299 5.299 7 C 0.098 3.902 8 C -0.071 4.071 9 C -0.195 4.195 10 C -0.061 4.061 11 C 0.462 3.538 12 O -0.562 6.562 13 N -0.449 5.449 14 C -0.310 4.310 15 H 0.106 0.894 16 C 0.031 3.969 17 N -0.878 5.878 18 Si 0.923 3.077 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.284 1.284 22 C 0.221 3.779 23 C 0.247 3.753 24 N -0.473 5.473 25 C 0.105 3.895 26 C -0.091 4.091 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.271 0.729 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.047 -7.455 -8.873 16.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.323 6.323 4 C 0.155 3.845 5 N -0.161 5.161 6 N -0.120 5.120 7 C -0.069 4.069 8 C -0.130 4.130 9 C -0.206 4.206 10 C -0.102 4.102 11 C 0.251 3.749 12 O -0.443 6.443 13 N -0.170 5.170 14 C -0.437 4.437 15 H 0.124 0.876 16 C -0.172 4.172 17 N -0.517 5.517 18 Si 0.750 3.250 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.210 1.210 22 C 0.093 3.907 23 C -0.072 4.072 24 N -0.153 5.153 25 C -0.020 4.020 26 C -0.149 4.149 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.141 0.859 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.713 -9.120 -8.520 17.117 hybrid contribution 1.432 0.668 0.788 1.766 sum -10.281 -8.453 -7.732 15.392 Atomic orbital electron populations 1.21741 0.93309 1.02331 1.03422 1.22411 0.95920 0.82410 1.00408 1.87899 1.21279 1.27647 1.95451 1.22004 0.81881 0.78471 1.02160 1.48004 1.55331 1.09034 1.03769 1.77226 1.24953 1.02466 1.07346 1.22143 0.97468 0.93761 0.93530 1.20175 1.02581 0.92884 0.97355 1.19128 1.13424 0.94954 0.93053 1.19976 0.95470 0.96049 0.98736 1.20188 0.88947 0.82151 0.83654 1.90548 1.61512 1.37786 1.54471 1.43643 1.07351 1.22188 1.43866 1.19695 0.81226 1.32075 1.10726 0.87647 1.25252 1.00013 0.98126 0.93822 1.69850 1.36684 1.39037 1.06109 0.85914 0.82393 0.78311 0.78407 1.19190 1.20533 1.21046 1.18688 0.92765 0.93564 0.85670 1.29180 0.90299 0.93078 0.94633 1.80731 1.14246 1.08834 1.11533 1.20714 0.99923 0.91029 0.90316 1.20442 1.03312 1.01700 0.89440 0.91693 0.91728 0.90839 0.92947 0.92956 0.89911 0.90024 0.90157 0.91312 0.90415 0.89267 0.89929 0.91836 0.85927 0.89764 0.90332 0.89328 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.16 0.38 -0.73 16 2 C 0.07 0.55 6.66 37.16 0.25 0.80 16 3 O -0.40 -5.13 10.57 -35.23 -0.37 -5.50 16 4 C 0.32 4.02 7.05 59.85 0.42 4.44 16 5 N -0.38 -6.35 3.88 -61.90 -0.24 -6.59 16 6 N -0.30 -5.48 12.58 33.67 0.42 -5.06 16 7 C 0.10 1.74 7.22 -82.41 -0.59 1.14 16 8 C -0.07 -0.99 10.26 36.00 0.37 -0.62 16 9 C -0.19 -3.56 4.59 -105.06 -0.48 -4.04 16 10 C -0.06 -1.07 4.21 -29.03 -0.12 -1.19 16 11 C 0.46 10.28 7.56 -10.99 -0.08 10.19 16 12 O -0.56 -14.68 15.71 5.55 0.09 -14.59 16 13 N -0.45 -10.20 2.60 -117.93 -0.31 -10.51 16 14 C -0.31 -7.87 9.27 -14.93 -0.14 -8.01 16 15 H 0.11 2.86 7.43 -52.48 -0.39 2.47 16 16 C 0.03 0.76 4.84 -17.47 -0.08 0.68 16 17 N -0.88 -21.98 9.59 55.50 0.53 -21.44 16 18 Si 0.92 19.56 29.60 -169.99 -5.03 14.53 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 C 0.22 4.22 4.91 -6.83 -0.03 4.19 16 23 C 0.25 5.28 12.81 -20.88 -0.27 5.01 16 24 N -0.47 -10.93 18.51 42.02 0.78 -10.15 16 25 C 0.10 1.83 6.93 -82.27 -0.57 1.26 16 26 C -0.09 -1.35 9.73 36.00 0.35 -1.00 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.85 7.04 -51.93 -0.37 0.49 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.92 7.26 -51.93 -0.38 0.54 16 37 H 0.09 1.29 6.53 -51.93 -0.34 0.95 16 38 H 0.08 1.41 7.12 -51.93 -0.37 1.04 16 39 H 0.27 6.60 8.31 -40.82 -0.34 6.27 16 40 H 0.12 2.40 6.63 -51.93 -0.34 2.06 16 41 H 0.08 1.20 6.69 -51.93 -0.35 0.86 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.09 1.50 7.78 -51.92 -0.40 1.09 16 44 H 0.06 0.83 7.07 -51.93 -0.37 0.47 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -34.19 375.80 -5.32 -39.50 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.24 Total: 2.03 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: -0.61 Total: 12.13 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 1.19 Total: -53.75 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.29 Total: -20.10 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.19 -5.32 -39.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601027311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.121 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds