Wall clock time and date at job start Tue Mar 31 2020 13:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.46667 * 2 1 4 4 C 1.34125 * 125.69377 * 125.29414 * 3 2 1 5 5 C 1.38626 * 107.33679 * 180.09789 * 4 3 2 6 6 C 1.46918 * 126.49056 * 179.89319 * 5 4 3 7 7 O 1.21421 * 120.00008 * 359.71304 * 6 5 4 8 8 C 1.49307 * 120.00282 * 179.71135 * 6 5 4 9 9 O 1.21364 * 119.99764 * 352.08125 * 8 6 5 10 10 N 1.34777 * 119.99904 * 172.07287 * 8 6 5 11 11 C 1.47084 * 120.87613 * 173.06508 * 10 8 6 12 12 C 1.53245 * 108.51548 * 128.79769 * 11 10 8 13 13 N 1.46898 * 109.33975 * 53.83215 * 12 11 10 14 14 C 1.46901 * 111.00037 * 172.74254 * 13 12 11 15 15 C 1.50700 * 109.46687 * 65.23605 * 14 13 12 16 16 H 1.07991 * 120.00525 * 359.50828 * 15 14 13 17 17 C 1.37881 * 119.99462 * 179.51524 * 15 14 13 18 18 N 1.31520 * 119.99753 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00379 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46940 * 89.99845 * 19 17 15 21 21 H 1.48493 * 109.46975 * 210.00133 * 19 17 15 22 22 H 1.48504 * 109.46775 * 330.00046 * 19 17 15 23 23 C 1.46898 * 111.26735 * 296.89317 * 13 12 11 24 24 C 1.47074 * 120.88512 * 353.05454 * 10 8 6 25 25 C 1.41570 * 107.01613 * 359.63001 * 5 4 3 26 26 N 1.30345 * 107.98958 * 0.22693 * 25 5 4 27 27 H 1.09003 * 109.47188 * 60.00242 * 1 2 3 28 28 H 1.09007 * 109.46964 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47474 * 299.99961 * 1 2 3 30 30 H 1.09000 * 109.47025 * 239.99766 * 2 1 3 31 31 H 1.09003 * 109.47188 * 119.99757 * 2 1 3 32 32 H 1.07993 * 126.33062 * 359.97438 * 4 3 2 33 33 H 1.08996 * 109.62717 * 9.09694 * 11 10 8 34 34 H 1.08995 * 109.63289 * 248.50618 * 11 10 8 35 35 H 1.09006 * 109.48871 * 173.79093 * 12 11 10 36 36 H 1.08999 * 109.49694 * 293.86903 * 12 11 10 37 37 H 1.08997 * 109.47093 * 185.23228 * 14 13 12 38 38 H 1.09004 * 109.46955 * 305.23592 * 14 13 12 39 39 H 0.96996 * 119.99860 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.49708 * 303.14331 * 23 13 12 41 41 H 1.09007 * 109.48928 * 183.06414 * 23 13 12 42 42 H 1.09003 * 109.62443 * 350.90744 * 24 10 8 43 43 H 1.08992 * 109.63140 * 111.49208 * 24 10 8 44 44 H 1.08001 * 125.99657 * 180.24677 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.8724 1.9093 0.8891 5 6 3.0713 3.2345 0.5340 6 6 3.9301 4.2050 1.2262 7 8 4.5479 3.8710 2.2167 8 6 4.0432 5.6021 0.7117 9 8 3.5439 5.8985 -0.3540 10 7 4.6998 6.5339 1.4308 11 6 4.9545 7.8729 0.8779 12 6 4.4774 8.9173 1.8927 13 7 5.1051 8.6530 3.1943 14 6 4.8099 9.7295 4.1494 15 6 3.3318 9.7496 4.4423 16 1 2.6760 9.0396 3.9606 17 6 2.8166 10.6749 5.3253 18 7 1.5267 10.6922 5.5814 19 14 3.9509 11.9028 6.1590 20 1 4.0550 13.1264 5.3241 21 1 3.4014 12.2582 7.4920 22 1 5.2979 11.2997 6.3236 23 6 4.6944 7.3478 3.7287 24 6 5.1803 6.2390 2.7892 25 6 2.2950 3.4738 -0.6254 26 7 1.6764 2.3679 -0.9309 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.3206 1.3974 1.7277 33 1 4.4065 7.9934 -0.0566 34 1 6.0223 7.9979 0.6983 35 1 4.7580 9.9130 1.5491 36 1 3.3936 8.8586 1.9929 37 1 5.3611 9.5564 5.0737 38 1 5.1087 10.6866 3.7218 39 1 1.1642 11.3433 6.2022 40 1 3.6076 7.3109 3.8034 41 1 5.1323 7.2052 4.7167 42 1 4.7817 5.2794 3.1183 43 1 6.2698 6.2070 2.7933 44 1 2.2276 4.4084 -1.1624 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000631545347.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:46 Heat of formation + Delta-G solvation = 41.515015 kcal Electronic energy + Delta-G solvation = -26868.183188 eV Core-core repulsion = 23016.785961 eV Total energy + Delta-G solvation = -3851.397227 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.65564 -40.36357 -38.39921 -37.56077 -34.94522 -34.40262 -32.28423 -30.88182 -30.70876 -30.17522 -28.76388 -26.36232 -25.05320 -23.92735 -23.28871 -22.23767 -21.32843 -20.85882 -19.95735 -18.87497 -17.51484 -17.00236 -16.68597 -16.26075 -16.04104 -15.51649 -15.18786 -14.69544 -14.55468 -14.44404 -14.37595 -14.18446 -13.82682 -13.76151 -13.24612 -13.10781 -12.85808 -12.56719 -12.45598 -12.41477 -12.25099 -11.89808 -11.54125 -11.34448 -11.17368 -10.96790 -10.76867 -10.58921 -10.44573 -10.26579 -10.01676 -9.83927 -9.55843 -9.05090 -8.91712 -8.62439 -8.49911 -7.28625 -6.13168 -4.13902 0.67727 1.67695 2.02553 2.47604 2.82216 3.25813 3.33685 3.36833 3.42351 3.97550 4.18374 4.36858 4.40281 4.46327 4.67542 4.79450 4.80005 4.92572 5.10124 5.19409 5.20329 5.35585 5.39410 5.51357 5.53175 5.65844 5.67476 5.80802 5.91311 5.98577 6.11736 6.33277 6.38066 6.49892 6.59493 6.64118 6.73318 6.88608 7.01896 7.14138 7.35865 7.45902 7.53607 7.96092 7.99792 8.07415 8.40701 8.88780 9.49008 10.99714 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020423 B = 0.002746 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.658233 B =10192.404670 C =10690.445626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.124 3.876 3 N -0.359 5.359 4 C 0.135 3.865 5 C -0.315 4.315 6 C 0.429 3.571 7 O -0.437 6.437 8 C 0.487 3.513 9 O -0.525 6.525 10 N -0.576 5.576 11 C 0.111 3.889 12 C 0.048 3.952 13 N -0.535 5.535 14 C 0.154 3.846 15 C -0.553 4.553 16 H 0.074 0.926 17 C 0.072 3.928 18 N -0.898 5.898 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.263 1.263 23 C 0.047 3.953 24 C 0.079 3.921 25 C 0.117 3.883 26 N -0.305 5.305 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.190 0.810 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.049 0.951 37 H 0.031 0.969 38 H 0.026 0.974 39 H 0.264 0.736 40 H 0.049 0.951 41 H 0.080 0.920 42 H 0.124 0.876 43 H 0.072 0.928 44 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.644 -20.854 -10.265 23.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.004 3.996 3 N -0.137 5.137 4 C -0.018 4.018 5 C -0.329 4.329 6 C 0.305 3.695 7 O -0.312 6.312 8 C 0.272 3.728 9 O -0.403 6.403 10 N -0.309 5.309 11 C -0.011 4.011 12 C -0.082 4.082 13 N -0.259 5.259 14 C 0.027 3.973 15 C -0.592 4.592 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.082 4.082 24 C -0.043 4.043 25 C -0.071 4.071 26 N -0.124 5.124 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.207 0.793 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.141 0.859 43 H 0.090 0.910 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.210 -21.516 -11.087 24.416 hybrid contribution 0.088 1.310 1.362 1.892 sum 3.298 -20.206 -9.725 22.666 Atomic orbital electron populations 1.22065 0.93221 1.03150 1.04027 1.21862 0.96645 0.76801 1.04284 1.48746 1.33529 1.10882 1.20517 1.23255 0.90995 0.93544 0.94035 1.20451 1.12792 0.94875 1.04761 1.21481 0.78167 0.87612 0.82258 1.90375 1.39058 1.79426 1.22291 1.20460 0.79888 0.86941 0.85536 1.90622 1.46134 1.80822 1.22745 1.48235 1.53341 1.12760 1.16523 1.21977 1.01175 0.80335 0.97641 1.22276 0.98485 0.97440 0.89967 1.62438 1.56983 1.02915 1.03525 1.20205 0.95900 0.89793 0.91373 1.21683 0.92432 1.18338 1.26747 0.90825 1.24983 0.94880 0.97141 0.96055 1.69933 1.11927 1.36204 1.35533 0.86783 0.81604 0.81854 0.79084 1.20185 1.21308 1.18773 1.22318 0.99817 0.88915 0.97153 1.22939 1.00156 1.01292 0.79877 1.24754 0.91149 0.97340 0.93850 1.77208 1.24428 0.97357 1.13397 0.90789 0.90416 0.91800 0.89172 0.88206 0.79337 0.89022 0.90826 0.90233 0.93279 0.95066 0.95630 0.92643 0.93321 0.90174 0.85884 0.90967 0.77475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 10.09 37.16 0.37 -0.52 16 2 C 0.12 0.65 7.20 -4.04 -0.03 0.62 16 3 N -0.36 -3.38 3.64 -60.68 -0.22 -3.60 16 4 C 0.13 1.30 11.27 -16.41 -0.18 1.11 16 5 C -0.32 -3.96 6.12 -104.97 -0.64 -4.60 16 6 C 0.43 6.03 7.05 -31.46 -0.22 5.81 16 7 O -0.44 -6.25 13.76 5.43 0.07 -6.18 16 8 C 0.49 7.72 7.72 -11.65 -0.09 7.63 16 9 O -0.53 -8.87 13.76 5.48 0.08 -8.79 16 10 N -0.58 -9.32 3.01 -173.03 -0.52 -9.85 16 11 C 0.11 1.76 6.62 -3.60 -0.02 1.73 16 12 C 0.05 0.90 5.25 -3.70 -0.02 0.88 16 13 N -0.53 -10.82 4.83 -235.76 -1.14 -11.96 16 14 C 0.15 3.61 4.19 -4.98 -0.02 3.59 16 15 C -0.55 -15.20 8.32 -34.44 -0.29 -15.49 16 16 H 0.07 2.23 6.11 -52.49 -0.32 1.91 16 17 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 19 Si 0.88 21.16 27.48 -169.99 -4.67 16.48 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.26 -6.06 6.53 56.52 0.37 -5.69 16 23 C 0.05 0.89 5.15 -3.70 -0.02 0.87 16 24 C 0.08 1.25 6.12 -3.60 -0.02 1.23 16 25 C 0.12 1.51 11.14 -16.91 -0.19 1.32 16 26 N -0.30 -3.74 12.31 30.90 0.38 -3.36 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.24 8.06 -51.93 -0.42 -0.17 16 32 H 0.19 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.09 1.42 7.04 -51.93 -0.37 1.05 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.43 8.05 -51.93 -0.42 1.01 16 36 H 0.05 1.07 7.02 -51.93 -0.36 0.71 16 37 H 0.03 0.74 7.16 -51.93 -0.37 0.37 16 38 H 0.03 0.60 7.52 -51.93 -0.39 0.21 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.05 1.07 6.69 -51.93 -0.35 0.72 16 41 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 42 H 0.12 1.89 4.41 -54.33 -0.24 1.65 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.21 2.69 6.30 -52.49 -0.33 2.36 16 LS Contribution 356.86 15.07 5.38 5.38 Total: -1.00 -33.14 356.86 -7.45 -40.60 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.12 Total: 1.61 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -1.47 Total: 6.14 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.73 Total: -55.24 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.15 Total: -14.97 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.14 -7.45 -40.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000631545347.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.110 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds