Wall clock time and date at job start Tue Mar 31 2020 13:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46496 * 109.46996 * 2 1 4 4 C 1.46508 * 120.00091 * 269.99978 * 3 2 1 5 5 C 1.50694 * 109.46683 * 269.99856 * 4 3 2 6 6 H 1.07997 * 120.00700 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99726 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99974 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00255 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47174 * 60.00072 * 9 7 5 11 11 H 1.48505 * 109.47176 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47092 * 300.00188 * 9 7 5 13 13 C 1.34782 * 120.00067 * 90.00123 * 3 2 1 14 14 O 1.21280 * 120.00015 * 179.97438 * 13 3 2 15 15 C 1.50694 * 119.99739 * 359.97438 * 13 3 2 16 16 N 1.46507 * 109.47272 * 180.02562 * 15 13 3 17 17 C 1.34698 * 126.52219 * 124.99497 * 16 15 13 18 18 C 1.37990 * 106.65198 * 180.02562 * 17 16 15 19 19 C 1.46774 * 125.91595 * 180.02562 * 18 17 16 20 20 O 1.21301 * 120.00458 * 0.02562 * 19 18 17 21 21 C 1.50702 * 119.99425 * 180.02562 * 19 18 17 22 22 C 1.53787 * 113.60869 * 155.00140 * 21 19 18 23 23 C 1.53784 * 87.07923 * 139.98154 * 22 21 19 24 24 C 1.53779 * 87.08045 * 334.56667 * 23 22 21 25 25 N 1.34609 * 108.16445 * 0.26650 * 18 17 16 26 26 N 1.28723 * 109.54682 * 359.55319 * 25 18 17 27 27 H 1.08997 * 109.46959 * 299.99930 * 1 2 3 28 28 H 1.08997 * 109.46748 * 60.00098 * 1 2 3 29 29 H 1.08995 * 109.46650 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46959 * 240.00070 * 2 1 3 31 31 H 1.08997 * 109.46748 * 119.99902 * 2 1 3 32 32 H 1.08998 * 109.46622 * 30.00429 * 4 3 2 33 33 H 1.08998 * 109.46919 * 149.99891 * 4 3 2 34 34 H 0.96994 * 120.00432 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.47360 * 60.00331 * 15 13 3 36 36 H 1.09002 * 109.47777 * 299.99944 * 15 13 3 37 37 H 1.08001 * 126.67648 * 0.02562 * 17 16 15 38 38 H 1.09000 * 112.91073 * 23.75114 * 21 19 18 39 39 H 1.09004 * 113.61202 * 254.52907 * 22 21 19 40 40 H 1.08994 * 113.61447 * 25.43338 * 22 21 19 41 41 H 1.09002 * 113.61478 * 89.11632 * 23 22 21 42 42 H 1.09004 * 113.61162 * 220.01809 * 23 22 21 43 43 H 1.09006 * 113.61307 * 270.88660 * 24 23 22 44 44 H 1.08999 * 113.69146 * 139.99146 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2688 5 6 3.6858 1.8351 -1.7037 6 1 4.3430 1.2310 -1.0957 7 6 4.1492 2.3897 -2.8779 8 7 3.3491 3.1258 -3.6181 9 14 5.9132 2.0957 -3.4175 10 1 6.1404 0.6389 -3.5948 11 1 6.1607 2.7959 -4.7035 12 1 6.8410 2.6190 -2.3830 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3082 2.2040 3.5859 17 6 1.4881 2.5459 4.5982 18 6 2.1990 3.4063 5.4097 19 6 1.7042 4.0359 6.6398 20 8 0.5751 3.8135 7.0232 21 6 2.5990 4.9588 7.4263 22 6 1.8309 5.9802 8.2817 23 6 2.8825 5.7359 9.3769 24 6 3.1034 4.3510 8.7458 25 7 3.4232 3.5721 4.8750 26 7 3.5222 2.8710 3.8001 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0283 33 1 2.0955 3.1410 -1.1384 34 1 3.6749 3.5157 -4.4443 35 1 2.6213 0.4186 2.5302 36 1 0.9433 1.0125 2.5299 37 1 0.4718 2.2118 4.7461 38 1 3.3886 5.4028 6.8201 39 1 1.8501 6.9918 7.8759 40 1 0.8287 5.6527 8.5578 41 1 3.7496 6.3923 9.3040 42 1 2.4642 5.6957 10.3827 43 1 2.4489 3.5781 9.1489 44 1 4.1493 4.0459 8.7143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000640975729.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:38 Heat of formation + Delta-G solvation = 48.036324 kcal Electronic energy + Delta-G solvation = -26391.798987 eV Core-core repulsion = 22540.684545 eV Total energy + Delta-G solvation = -3851.114442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.11421 -40.08388 -39.27888 -37.39168 -35.62141 -34.51617 -32.87114 -31.06307 -30.32658 -29.34593 -27.39532 -26.56421 -25.86264 -23.48924 -23.31332 -23.18683 -21.95271 -20.65027 -19.34603 -18.66875 -17.64409 -17.08078 -16.49240 -16.35513 -15.91668 -15.49368 -15.43440 -15.23935 -14.78537 -14.56536 -14.25042 -14.13593 -13.66000 -13.36706 -13.19249 -12.88999 -12.68381 -12.30753 -12.16304 -12.11980 -12.00080 -11.79962 -11.56342 -11.34487 -11.18985 -11.04301 -10.92115 -10.73174 -10.63167 -10.60705 -10.60414 -10.21817 -9.77606 -9.76534 -9.29972 -9.10566 -8.50107 -7.90764 -6.11849 -4.17169 0.93836 1.51961 1.97102 2.90903 2.98969 3.28469 3.33569 3.37215 3.55486 3.75468 4.25359 4.33182 4.35384 4.43313 4.44180 4.61246 4.62288 4.68362 4.76502 4.80962 5.11545 5.19008 5.23206 5.34467 5.40248 5.45210 5.50340 5.52742 5.53959 5.66479 5.71250 5.76509 5.79357 5.95959 6.03741 6.19583 6.22799 6.29168 6.85804 7.26996 7.30504 7.34778 7.83068 8.08113 8.10690 8.13311 8.67335 8.87903 9.48302 10.96385 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018251 B = 0.002684 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.807307 B =10428.431215 C =11400.237992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 N -0.590 5.590 4 C 0.249 3.751 5 C -0.530 4.530 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.493 3.507 14 O -0.510 6.510 15 C 0.095 3.905 16 N -0.339 5.339 17 C 0.088 3.912 18 C -0.142 4.142 19 C 0.461 3.539 20 O -0.461 6.461 21 C -0.153 4.153 22 C -0.127 4.127 23 C -0.139 4.139 24 C -0.118 4.118 25 N -0.200 5.200 26 N -0.021 5.021 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.044 0.956 34 H 0.265 0.735 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.202 0.798 38 H 0.121 0.879 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.661 -4.594 20.286 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.323 5.323 4 C 0.130 3.870 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.276 3.724 14 O -0.384 6.384 15 C -0.030 4.030 16 N -0.122 5.122 17 C -0.070 4.070 18 C -0.279 4.279 19 C 0.337 3.663 20 O -0.334 6.334 21 C -0.172 4.172 22 C -0.164 4.164 23 C -0.176 4.176 24 C -0.155 4.155 25 N -0.075 5.075 26 N -0.003 5.003 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.218 0.782 38 H 0.139 0.861 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.661 -3.769 19.701 20.841 hybrid contribution -0.056 -0.589 -0.489 0.768 sum -5.717 -4.358 19.211 20.512 Atomic orbital electron populations 1.22248 0.96437 1.01795 1.02462 1.21534 0.93716 0.83934 1.03190 1.48267 1.63405 1.13330 1.07291 1.19338 0.96605 0.93605 0.77430 1.21349 0.96731 1.32400 1.06405 0.92405 1.24931 0.97968 0.94752 0.96333 1.69913 1.35839 1.33171 1.14355 0.86539 0.84645 0.78264 0.77902 1.20208 1.21132 1.20031 1.19896 0.80400 0.87490 0.84604 1.90804 1.44062 1.17309 1.86255 1.22119 1.04446 0.92033 0.84390 1.50002 1.11478 1.32860 1.17818 1.23855 0.98222 0.96665 0.88213 1.22295 0.93427 1.08715 1.03422 1.21057 0.86544 0.77814 0.80910 1.90513 1.19798 1.56275 1.66830 1.23027 1.00013 0.97770 0.96412 1.22899 0.98987 0.98597 0.95924 1.22807 0.99420 0.96940 0.98476 1.22772 1.01930 0.97438 0.93403 1.74708 1.16604 1.13477 1.02722 1.82244 1.00845 1.06590 1.10603 0.93276 0.91660 0.91744 0.89199 0.91788 0.94626 0.93824 0.92549 0.85750 0.85502 0.78165 0.86080 0.90877 0.88918 0.89749 0.91076 0.89787 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.24 37.16 0.38 -1.44 16 2 C 0.10 1.33 5.93 -4.04 -0.02 1.30 16 3 N -0.59 -11.19 2.46 -175.06 -0.43 -11.62 16 4 C 0.25 6.15 5.16 -5.19 -0.03 6.13 16 5 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 9 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 13 C 0.49 9.34 7.71 -10.99 -0.08 9.26 16 14 O -0.51 -12.51 15.30 5.56 0.09 -12.43 16 15 C 0.10 1.19 5.57 -5.19 -0.03 1.16 16 16 N -0.34 -4.99 3.40 -61.89 -0.21 -5.20 16 17 C 0.09 1.10 11.34 -16.38 -0.19 0.91 16 18 C -0.14 -2.01 6.96 -83.29 -0.58 -2.59 16 19 C 0.46 5.80 6.54 -30.86 -0.20 5.59 16 20 O -0.46 -6.30 16.59 5.54 0.09 -6.21 16 21 C -0.15 -1.59 3.97 -90.96 -0.36 -1.95 16 22 C -0.13 -1.13 7.54 -25.91 -0.20 -1.33 16 23 C -0.14 -1.03 8.08 -25.92 -0.21 -1.24 16 24 C -0.12 -1.01 7.63 -25.92 -0.20 -1.21 16 25 N -0.20 -3.33 12.06 32.97 0.40 -2.93 16 26 N -0.02 -0.39 12.85 60.35 0.78 0.38 16 27 H 0.05 0.46 7.22 -51.93 -0.37 0.09 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 31 H 0.06 0.63 6.44 -51.93 -0.33 0.29 16 32 H 0.04 0.88 8.07 -51.93 -0.42 0.47 16 33 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 35 H 0.12 1.25 7.40 -51.93 -0.38 0.87 16 36 H 0.13 1.02 7.12 -51.93 -0.37 0.65 16 37 H 0.20 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.12 1.30 7.95 -51.93 -0.41 0.89 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.89 7.39 -51.93 -0.38 0.50 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 376.53 15.07 5.67 5.67 Total: -1.00 -35.73 376.53 -6.44 -42.17 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -6.41 Total: -2.47 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -2.14 Total: 1.39 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 1.27 Total: -44.74 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.18 Total: -18.64 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.73 -6.44 -42.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000640975729.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.208 kcal (2) G-P(sol) polarization free energy of solvation -35.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds