Wall clock time and date at job start Tue Mar 31 2020 13:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46496 * 109.46996 * 2 1 4 4 C 1.46508 * 120.00091 * 269.99978 * 3 2 1 5 5 C 1.50694 * 109.46683 * 269.99856 * 4 3 2 6 6 H 1.07997 * 120.00700 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99726 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99974 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00255 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47174 * 60.00072 * 9 7 5 11 11 H 1.48505 * 109.47176 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47092 * 300.00188 * 9 7 5 13 13 C 1.34782 * 120.00067 * 90.00123 * 3 2 1 14 14 O 1.21280 * 120.00015 * 179.97438 * 13 3 2 15 15 C 1.50694 * 119.99739 * 359.97438 * 13 3 2 16 16 N 1.46507 * 109.47272 * 180.02562 * 15 13 3 17 17 C 1.34698 * 126.52219 * 124.99497 * 16 15 13 18 18 C 1.37990 * 106.65198 * 180.02562 * 17 16 15 19 19 C 1.46774 * 125.91595 * 180.02562 * 18 17 16 20 20 O 1.21301 * 120.00458 * 0.02562 * 19 18 17 21 21 C 1.50702 * 119.99425 * 180.02562 * 19 18 17 22 22 C 1.53787 * 113.60869 * 155.00140 * 21 19 18 23 23 C 1.53784 * 87.07923 * 139.98154 * 22 21 19 24 24 C 1.53779 * 87.08045 * 334.56667 * 23 22 21 25 25 N 1.34609 * 108.16445 * 0.26650 * 18 17 16 26 26 N 1.28723 * 109.54682 * 359.55319 * 25 18 17 27 27 H 1.08997 * 109.46959 * 299.99930 * 1 2 3 28 28 H 1.08997 * 109.46748 * 60.00098 * 1 2 3 29 29 H 1.08995 * 109.46650 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46959 * 240.00070 * 2 1 3 31 31 H 1.08997 * 109.46748 * 119.99902 * 2 1 3 32 32 H 1.08998 * 109.46622 * 30.00429 * 4 3 2 33 33 H 1.08998 * 109.46919 * 149.99891 * 4 3 2 34 34 H 0.96994 * 120.00432 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.47360 * 60.00331 * 15 13 3 36 36 H 1.09002 * 109.47777 * 299.99944 * 15 13 3 37 37 H 1.08001 * 126.67648 * 0.02562 * 17 16 15 38 38 H 1.09000 * 112.91073 * 23.75114 * 21 19 18 39 39 H 1.09004 * 113.61202 * 254.52907 * 22 21 19 40 40 H 1.08994 * 113.61447 * 25.43338 * 22 21 19 41 41 H 1.09002 * 113.61478 * 89.11632 * 23 22 21 42 42 H 1.09004 * 113.61162 * 220.01809 * 23 22 21 43 43 H 1.09006 * 113.61307 * 270.88660 * 24 23 22 44 44 H 1.08999 * 113.69146 * 139.99146 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2688 5 6 3.6858 1.8351 -1.7037 6 1 4.3430 1.2310 -1.0957 7 6 4.1492 2.3897 -2.8779 8 7 3.3491 3.1258 -3.6181 9 14 5.9132 2.0957 -3.4175 10 1 6.1404 0.6389 -3.5948 11 1 6.1607 2.7959 -4.7035 12 1 6.8410 2.6190 -2.3830 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3082 2.2040 3.5859 17 6 1.4881 2.5459 4.5982 18 6 2.1990 3.4063 5.4097 19 6 1.7042 4.0359 6.6398 20 8 0.5751 3.8135 7.0232 21 6 2.5990 4.9588 7.4263 22 6 1.8309 5.9802 8.2817 23 6 2.8825 5.7359 9.3769 24 6 3.1034 4.3510 8.7458 25 7 3.4232 3.5721 4.8750 26 7 3.5222 2.8710 3.8001 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0283 33 1 2.0955 3.1410 -1.1384 34 1 3.6749 3.5157 -4.4443 35 1 2.6213 0.4186 2.5302 36 1 0.9433 1.0125 2.5299 37 1 0.4718 2.2118 4.7461 38 1 3.3886 5.4028 6.8201 39 1 1.8501 6.9918 7.8759 40 1 0.8287 5.6527 8.5578 41 1 3.7496 6.3923 9.3040 42 1 2.4642 5.6957 10.3827 43 1 2.4489 3.5781 9.1489 44 1 4.1493 4.0459 8.7143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000640975729.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:37 Heat of formation + Delta-G solvation = 23.601642 kcal Electronic energy + Delta-G solvation = -26392.858554 eV Core-core repulsion = 22540.684545 eV Total energy + Delta-G solvation = -3852.174009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.20890 -41.03080 -40.68699 -38.22298 -37.11728 -35.71724 -34.87823 -32.14112 -31.68101 -30.57006 -28.75381 -27.81340 -26.54850 -25.14876 -24.44491 -24.28271 -23.17600 -21.64636 -20.33135 -19.80752 -18.74741 -18.68032 -18.23146 -17.46881 -16.94033 -16.77490 -16.55871 -16.36650 -16.09020 -15.94232 -15.42975 -15.27129 -14.79116 -14.59018 -14.45651 -13.97602 -13.73036 -13.58250 -13.37827 -13.27870 -13.13659 -13.03392 -12.87154 -12.68271 -12.56757 -12.37491 -12.24780 -12.16323 -11.90314 -11.81206 -11.73679 -11.41069 -11.29049 -10.71377 -10.68634 -10.66800 -10.30364 -9.54245 -8.25990 -6.40063 -0.04047 0.38319 0.96529 1.34123 1.39031 1.45343 1.60606 1.88447 2.16479 2.37505 2.79463 3.04507 3.28385 3.32827 3.57659 3.61938 3.73203 3.82096 3.90470 3.93487 3.99822 4.17751 4.26970 4.35707 4.42204 4.63655 4.73693 4.78592 4.81207 4.86603 4.89392 4.98862 5.05007 5.05854 5.09797 5.17628 5.21190 5.29075 5.42728 5.52588 5.52987 5.78190 6.01868 6.32839 6.60238 6.70567 6.95845 7.20742 7.35091 8.81028 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018251 B = 0.002684 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.807307 B =10428.431215 C =11400.237992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.091 3.909 3 N -0.594 5.594 4 C 0.265 3.735 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.964 3.036 10 H -0.257 1.257 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.483 3.517 14 O -0.580 6.580 15 C 0.106 3.894 16 N -0.342 5.342 17 C 0.108 3.892 18 C -0.160 4.160 19 C 0.464 3.536 20 O -0.473 6.473 21 C -0.162 4.162 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.115 4.115 25 N -0.215 5.215 26 N -0.081 5.081 27 H 0.068 0.932 28 H 0.035 0.965 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.028 0.972 33 H -0.007 1.007 34 H 0.267 0.733 35 H 0.158 0.842 36 H 0.185 0.815 37 H 0.248 0.752 38 H 0.113 0.887 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.460 -6.952 22.317 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.030 4.030 3 N -0.326 5.326 4 C 0.144 3.856 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.788 3.212 10 H -0.181 1.181 11 H -0.205 1.205 12 H -0.207 1.207 13 C 0.269 3.731 14 O -0.459 6.459 15 C -0.018 4.018 16 N -0.125 5.125 17 C -0.050 4.050 18 C -0.298 4.298 19 C 0.341 3.659 20 O -0.347 6.347 21 C -0.182 4.182 22 C -0.164 4.164 23 C -0.165 4.165 24 C -0.153 4.153 25 N -0.089 5.089 26 N -0.061 5.061 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.117 0.883 30 H 0.093 0.907 31 H 0.130 0.870 32 H 0.046 0.954 33 H 0.011 0.989 34 H 0.076 0.924 35 H 0.176 0.824 36 H 0.202 0.798 37 H 0.264 0.736 38 H 0.131 0.869 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.467 -6.192 21.738 23.509 hybrid contribution 0.100 0.140 -1.105 1.119 sum -6.366 -6.052 20.632 22.424 Atomic orbital electron populations 1.22203 0.94079 1.03901 1.02057 1.21943 0.95630 0.80611 1.04840 1.48237 1.63353 1.15377 1.05600 1.18700 0.95314 0.91403 0.80230 1.21676 0.97943 1.32064 1.06395 0.92742 1.25832 1.02200 0.94516 0.96579 1.70033 1.37782 1.34175 1.14820 0.85525 0.79220 0.79184 0.77259 1.18119 1.20450 1.20712 1.20981 0.78661 0.86934 0.86493 1.90776 1.47006 1.20587 1.87530 1.22357 1.08543 0.91117 0.79733 1.50120 1.10945 1.32836 1.18557 1.24617 0.99184 0.94694 0.86496 1.22764 0.93175 1.09475 1.04365 1.21258 0.86546 0.77670 0.80450 1.90501 1.20172 1.56938 1.67065 1.23119 0.99923 0.98225 0.96887 1.22914 0.98993 0.98284 0.96211 1.22792 0.99139 0.96019 0.98594 1.22799 1.02105 0.98183 0.92165 1.74656 1.18091 1.13490 1.02682 1.82191 1.03305 1.08843 1.11801 0.91264 0.94575 0.88267 0.90707 0.87030 0.95419 0.98878 0.92427 0.82422 0.79789 0.73550 0.86900 0.90466 0.89460 0.88814 0.89675 0.89699 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 10.24 71.99 0.74 -2.22 16 2 C 0.09 2.18 5.93 86.38 0.51 2.69 16 3 N -0.59 -22.40 2.46 -826.15 -2.03 -24.42 16 4 C 0.26 13.72 5.16 85.63 0.44 14.16 16 5 C -0.54 -30.65 9.39 25.60 0.24 -30.41 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 9 Si 0.96 45.00 29.54 68.60 2.03 47.02 16 10 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 C 0.48 18.08 7.71 87.65 0.68 18.75 16 14 O -0.58 -29.63 15.30 -3.03 -0.05 -29.68 16 15 C 0.11 2.27 5.57 85.63 0.48 2.75 16 16 N -0.34 -9.37 3.40 -349.71 -1.19 -10.56 16 17 C 0.11 2.38 11.34 84.19 0.95 3.34 16 18 C -0.16 -4.38 6.96 40.89 0.28 -4.09 16 19 C 0.46 11.24 6.54 27.92 0.18 11.42 16 20 O -0.47 -12.17 16.59 -3.09 -0.05 -12.22 16 21 C -0.16 -3.29 3.97 -11.01 -0.04 -3.33 16 22 C -0.13 -2.13 7.54 31.12 0.23 -1.89 16 23 C -0.13 -1.66 8.08 31.12 0.25 -1.41 16 24 C -0.11 -1.82 7.63 31.12 0.24 -1.59 16 25 N -0.22 -7.25 12.06 -49.61 -0.60 -7.85 16 26 N -0.08 -2.98 12.85 37.02 0.48 -2.50 16 27 H 0.07 0.98 7.22 -2.39 -0.02 0.96 16 28 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 2.03 8.07 -2.39 -0.02 2.01 16 31 H 0.11 1.62 6.44 -2.39 -0.02 1.60 16 32 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 33 H -0.01 -0.42 7.42 -2.39 -0.02 -0.44 16 34 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.16 2.40 7.40 -2.38 -0.02 2.38 16 36 H 0.19 1.81 7.12 -2.39 -0.02 1.79 16 37 H 0.25 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.11 2.46 7.95 -2.39 -0.02 2.44 16 39 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.09 1.57 7.39 -2.39 -0.02 1.55 16 41 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 1.33 8.09 -2.38 -0.02 1.31 16 44 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -85.87 376.53 5.53 -80.34 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 1.01 Total: 6.56 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 5.65 Total: 9.08 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -3.06 Total: -101.10 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -0.10 Total: -41.90 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -85.87 5.53 -80.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000640975729.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.944 kcal (2) G-P(sol) polarization free energy of solvation -85.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds