Wall clock time and date at job start Tue Mar 31 2020 13:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45201 * 109.46746 * 2 1 4 4 C 1.34758 * 116.99891 * 180.02562 * 3 2 1 5 5 O 1.21513 * 119.99997 * 359.97438 * 4 3 2 6 6 C 1.47404 * 119.99972 * 179.97438 * 4 3 2 7 7 C 1.40212 * 120.87422 * 353.89707 * 6 4 3 8 8 N 1.31908 * 119.00494 * 180.28985 * 7 6 4 9 9 C 1.32723 * 120.90599 * 359.96156 * 8 7 6 10 10 N 1.37991 * 119.03765 * 180.02562 * 9 8 7 11 11 N 1.40093 * 120.00071 * 0.02562 * 10 9 8 12 12 C 1.28015 * 119.99770 * 180.02562 * 11 10 9 13 13 C 1.50705 * 120.00080 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.46474 * 0.02562 * 13 12 11 15 15 C 1.52992 * 109.47050 * 119.99739 * 13 12 11 16 16 C 1.53002 * 109.47069 * 240.00200 * 13 12 11 17 17 C 1.50704 * 109.46806 * 174.99649 * 16 13 12 18 18 H 1.08003 * 120.00087 * 0.02562 * 17 16 13 19 19 C 1.37873 * 119.99704 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00238 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00005 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46955 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46885 * 120.00198 * 21 19 17 24 24 H 1.48499 * 109.46919 * 240.00452 * 21 19 17 25 25 N 1.32699 * 121.92329 * 0.04060 * 9 8 7 26 26 C 1.31935 * 120.90644 * 359.97438 * 25 9 8 27 27 C 1.50696 * 120.49873 * 180.02562 * 26 25 9 28 28 H 1.09005 * 109.46945 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47012 * 300.00139 * 1 2 3 30 30 H 1.08998 * 109.47393 * 60.00758 * 1 2 3 31 31 H 1.08995 * 109.47207 * 239.99664 * 2 1 3 32 32 H 1.08998 * 109.47393 * 119.99242 * 2 1 3 33 33 H 1.08000 * 120.49665 * 0.24922 * 7 6 4 34 34 H 0.97005 * 119.99418 * 180.02562 * 10 9 8 35 35 H 1.08003 * 120.00419 * 0.02562 * 12 11 10 36 36 H 1.09003 * 109.47176 * 60.00804 * 15 13 12 37 37 H 1.09011 * 109.47338 * 180.02562 * 15 13 12 38 38 H 1.08996 * 109.47537 * 299.99951 * 15 13 12 39 39 H 1.08999 * 109.46765 * 294.99201 * 16 13 12 40 40 H 1.08997 * 109.47058 * 55.00015 * 16 13 12 41 41 H 0.96999 * 119.99965 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.47125 * 263.71523 * 27 26 25 43 43 H 1.09000 * 109.47198 * 23.70769 * 27 26 25 44 44 H 1.08996 * 109.47286 * 143.71583 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3499 1.5456 -0.0005 5 8 4.0901 0.5820 -0.0005 6 6 3.9132 2.9078 -0.0011 7 6 3.0823 4.0299 -0.1291 8 7 3.6263 5.2316 -0.1309 9 6 4.9393 5.3858 -0.0131 10 7 5.4672 6.6607 -0.0191 11 7 4.6200 7.7691 -0.1477 12 6 5.1099 8.9518 -0.1538 13 6 4.1987 10.1441 -0.2928 14 1 3.1662 9.8045 -0.3749 15 6 4.3433 11.0425 0.9371 16 6 4.5783 10.9325 -1.5479 17 6 3.5919 12.0530 -1.7546 18 1 2.7762 12.1894 -1.0600 19 6 3.7315 12.9046 -2.8298 20 7 4.7251 12.7388 -3.6754 21 14 2.5094 14.2941 -3.0857 22 1 1.4934 14.2652 -2.0031 23 1 3.2255 15.5946 -3.0574 24 1 1.8381 14.1270 -4.3997 25 7 5.7592 4.3497 0.1101 26 6 5.2942 3.1150 0.1205 27 6 6.2336 1.9452 0.2614 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 2.0131 3.9121 -0.2254 34 1 6.4249 6.7894 0.0658 35 1 6.1763 9.0952 -0.0602 36 1 5.3758 11.3821 1.0197 37 1 3.6839 11.9047 0.8369 38 1 4.0728 10.4808 1.8312 39 1 5.5791 11.3470 -1.4276 40 1 4.5611 10.2692 -2.4126 41 1 4.8235 13.3382 -4.4316 42 1 6.4692 1.5475 -0.7258 43 1 7.1514 2.2729 0.7495 44 1 5.7597 1.1690 0.8621 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766029679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:46 Heat of formation + Delta-G solvation = -3.276822 kcal Electronic energy + Delta-G solvation = -25315.077237 eV Core-core repulsion = 21461.737690 eV Total energy + Delta-G solvation = -3853.339547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.46786 -40.22413 -37.71509 -36.93417 -35.39087 -34.45604 -33.29765 -32.22745 -31.83952 -29.98604 -28.92849 -27.02347 -25.06416 -24.20849 -23.74972 -22.88423 -21.80356 -21.18871 -19.51841 -18.53244 -17.87115 -17.60933 -16.95035 -16.88779 -16.51415 -16.01938 -15.59765 -14.64954 -14.52287 -14.41088 -14.06588 -13.56007 -13.49441 -13.37475 -13.18472 -13.14312 -12.88264 -12.63888 -12.27901 -12.17363 -12.04116 -11.77660 -11.74724 -11.23503 -10.95324 -10.87013 -10.80739 -10.79462 -10.48695 -10.38116 -10.26199 -10.05978 -9.81613 -9.41518 -9.27428 -9.12114 -8.40720 -8.15552 -6.05068 -4.07157 0.31613 0.98663 2.14297 2.20198 2.38283 2.56064 3.29561 3.37654 3.41196 3.70182 3.82728 4.15473 4.24978 4.43176 4.43908 4.57405 4.62547 4.76538 4.90285 5.12407 5.25890 5.27993 5.31863 5.37861 5.40892 5.41588 5.51440 5.61131 5.79846 5.88445 5.94882 6.04666 6.17754 6.20358 6.37705 6.59775 6.75982 6.90181 6.92127 7.08357 7.49208 7.57131 7.64162 7.78981 7.92830 8.32419 8.43771 8.98294 9.56967 11.06358 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017640 B = 0.002088 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.891235 B =13409.437551 C =14335.560152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 O -0.356 6.356 4 C 0.532 3.468 5 O -0.511 6.511 6 C -0.314 4.314 7 C 0.254 3.746 8 N -0.539 5.539 9 C 0.618 3.382 10 N -0.542 5.542 11 N -0.244 5.244 12 C 0.112 3.888 13 C -0.039 4.039 14 H 0.082 0.918 15 C -0.128 4.128 16 C 0.033 3.967 17 C -0.515 4.515 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.893 3.107 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 N -0.579 5.579 26 C 0.287 3.713 27 C -0.112 4.112 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.182 0.818 34 H 0.398 0.602 35 H 0.104 0.896 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.036 0.964 39 H 0.021 0.979 40 H 0.019 0.981 41 H 0.260 0.740 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.980 -23.720 9.658 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.273 6.273 4 C 0.377 3.623 5 O -0.401 6.401 6 C -0.324 4.324 7 C 0.082 3.918 8 N -0.259 5.259 9 C 0.263 3.737 10 N -0.263 5.263 11 N -0.046 5.046 12 C -0.103 4.103 13 C -0.060 4.060 14 H 0.101 0.899 15 C -0.186 4.186 16 C -0.005 4.005 17 C -0.553 4.553 18 H 0.079 0.921 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.721 3.279 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.211 1.211 25 N -0.303 5.303 26 C 0.137 3.863 27 C -0.169 4.169 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.199 0.801 34 H 0.239 0.761 35 H 0.121 0.879 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.040 0.960 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.144 -23.475 9.444 25.394 hybrid contribution 0.424 0.253 -0.298 0.577 sum -1.720 -23.222 9.145 25.017 Atomic orbital electron populations 1.21825 0.92493 1.03033 1.03777 1.23033 0.95378 0.79788 1.02670 1.86541 1.23702 1.32607 1.84409 1.20420 0.80500 0.88890 0.72472 1.90786 1.59813 1.42489 1.46999 1.20293 0.95885 0.92809 1.23391 1.23529 1.00736 0.85134 0.82430 1.68226 1.11125 1.25476 1.21080 1.18907 0.85387 0.84745 0.84688 1.45113 1.07663 1.00639 1.72893 1.74729 1.19601 0.94476 1.15805 1.26891 0.99924 0.92361 0.91078 1.20411 0.97511 0.89115 0.98977 0.89946 1.21681 1.02198 0.99696 0.95074 1.19143 0.97366 0.94147 0.89878 1.21186 1.11689 1.12447 1.10011 0.92106 1.25015 0.95605 0.97895 0.95955 1.69969 1.30584 1.38287 1.14579 0.86524 0.81281 0.81993 0.78147 1.19617 1.21084 1.21056 1.67780 1.38860 0.98347 1.25336 1.21529 0.90602 0.91734 0.82385 1.21110 0.97760 0.93513 1.04488 0.90197 0.91346 0.91281 0.91106 0.91149 0.80081 0.76057 0.87869 0.93092 0.90603 0.94533 0.96028 0.96279 0.93009 0.88965 0.90348 0.87800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.29 37.16 0.38 -0.38 16 2 C 0.07 0.46 6.20 37.16 0.23 0.69 16 3 O -0.36 -3.41 9.58 -40.65 -0.39 -3.80 16 4 C 0.53 5.92 7.84 34.46 0.27 6.19 16 5 O -0.51 -6.18 13.31 -19.28 -0.26 -6.44 16 6 C -0.31 -3.76 5.91 -104.70 -0.62 -4.38 16 7 C 0.25 3.15 10.90 -16.78 -0.18 2.97 16 8 N -0.54 -8.49 9.90 -13.61 -0.13 -8.62 16 9 C 0.62 9.68 8.52 -322.85 -2.75 6.93 16 10 N -0.54 -8.39 6.39 29.75 0.19 -8.20 16 11 N -0.24 -4.28 10.90 32.67 0.36 -3.92 16 12 C 0.11 1.88 9.66 -13.87 -0.13 1.74 16 13 C -0.04 -0.74 2.75 -91.77 -0.25 -0.99 16 14 H 0.08 1.66 8.11 -51.93 -0.42 1.24 16 15 C -0.13 -2.15 8.98 37.15 0.33 -1.81 16 16 C 0.03 0.79 4.43 -27.88 -0.12 0.66 16 17 C -0.51 -13.63 8.41 -34.44 -0.29 -13.92 16 18 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 21 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 N -0.58 -8.16 10.37 -9.85 -0.10 -8.26 16 26 C 0.29 3.57 6.87 -81.82 -0.56 3.01 16 27 C -0.11 -1.09 8.98 36.00 0.32 -0.76 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.18 1.72 7.72 -52.49 -0.41 1.32 16 34 H 0.40 5.16 8.74 -182.60 -1.60 3.57 16 35 H 0.10 1.47 8.00 -52.48 -0.42 1.05 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 1.35 6.95 -51.92 -0.36 0.99 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.10 1.02 5.96 -51.93 -0.31 0.71 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -31.73 380.18 -10.03 -41.76 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -7.67 Total: -0.34 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -3.47 Total: 1.41 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 1.05 Total: -54.28 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.65 Total: -10.24 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.73 -10.03 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766029679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.481 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds