Wall clock time and date at job start Tue Mar 31 2020 12:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47235 * 2 1 4 4 C 1.53003 * 109.46956 * 120.00051 * 2 1 3 5 5 C 1.52995 * 109.47289 * 185.00127 * 4 2 1 6 6 C 1.53003 * 109.47289 * 179.97438 * 5 4 2 7 7 C 1.53001 * 117.51964 * 116.28130 * 6 5 4 8 8 C 1.52999 * 60.00190 * 107.47982 * 7 6 5 9 9 N 1.46497 * 109.47071 * 239.99414 * 2 1 3 10 10 C 1.34780 * 119.99673 * 85.00675 * 9 2 1 11 11 O 1.21363 * 120.00222 * 359.97438 * 10 9 2 12 12 C 1.49309 * 120.00172 * 180.02562 * 10 9 2 13 13 O 1.21403 * 119.99968 * 359.97438 * 12 10 9 14 14 N 1.34767 * 120.00297 * 179.97438 * 12 10 9 15 15 C 1.40294 * 120.00258 * 179.97438 * 14 12 10 16 16 C 1.40726 * 126.10060 * 359.68840 * 15 14 12 17 17 N 1.30875 * 108.37701 * 179.81519 * 16 15 14 18 18 N 1.40057 * 108.43334 * 0.44852 * 17 16 15 19 19 C 1.37305 * 126.05272 * 179.69549 * 18 17 16 20 20 H 1.08004 * 119.99911 * 180.02562 * 19 18 17 21 21 C 1.39001 * 120.00049 * 0.02562 * 19 18 17 22 22 N 1.31287 * 120.00052 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00156 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47076 * 59.99977 * 23 21 19 25 25 H 1.48494 * 109.47241 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47028 * 300.00496 * 23 21 19 27 27 C 1.35792 * 126.10026 * 180.02562 * 15 14 12 28 28 H 1.09005 * 109.46962 * 300.00339 * 1 2 3 29 29 H 1.09000 * 109.46350 * 59.99830 * 1 2 3 30 30 H 1.08996 * 109.47235 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47309 * 64.99443 * 4 2 1 32 32 H 1.09005 * 109.46839 * 304.99723 * 4 2 1 33 33 H 1.08999 * 109.47504 * 59.99435 * 5 4 2 34 34 H 1.09005 * 109.46851 * 299.99589 * 5 4 2 35 35 H 1.09002 * 115.54973 * 330.57913 * 6 5 4 36 36 H 1.09001 * 117.49733 * 214.97413 * 7 6 5 37 37 H 1.08995 * 117.49577 * 359.97438 * 7 6 5 38 38 H 1.09004 * 117.50150 * 252.51496 * 8 7 6 39 39 H 1.09004 * 117.49681 * 107.48417 * 8 7 6 40 40 H 0.97000 * 120.00483 * 264.99856 * 9 2 1 41 41 H 0.97007 * 120.00018 * 0.02562 * 14 12 10 42 42 H 1.07994 * 125.80516 * 359.97438 * 16 15 14 43 43 H 0.96997 * 119.99643 * 179.97438 * 22 21 19 44 44 H 1.07995 * 126.25364 * 359.94963 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0747 -1.3341 2.5634 7 6 4.9746 -2.5543 2.3580 8 6 5.5706 -1.2419 2.8711 9 7 2.0183 -0.6907 -1.1961 10 6 2.1472 -0.0184 -2.3571 11 8 1.8582 1.1591 -2.4118 12 6 2.6443 -0.7224 -3.5763 13 8 2.9329 -1.9003 -3.5218 14 7 2.7726 -0.0502 -4.7374 15 6 3.2402 -0.7116 -5.8828 16 6 3.6162 -2.0653 -5.9633 17 7 3.9931 -2.3166 -7.1911 18 7 3.8834 -1.1371 -7.9383 19 6 4.1916 -0.9914 -9.2683 20 1 4.0698 -0.0318 -9.7489 21 6 4.6603 -2.0788 -9.9963 22 7 4.8080 -3.2453 -9.4122 23 14 5.0789 -1.8808 -11.8060 24 1 6.1467 -0.8599 -11.9583 25 1 5.5533 -3.1788 -12.3492 26 1 3.8690 -1.4461 -12.5492 27 6 3.4169 -0.1581 -7.1102 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.7516 -1.7715 1.2057 32 1 1.6053 -0.2617 2.1370 33 1 3.8532 0.4369 1.3574 34 1 3.9994 -1.0729 0.4261 35 1 3.3871 -1.3524 3.4090 36 1 4.8790 -3.3754 3.0684 37 1 5.2032 -2.8440 1.3324 38 1 6.1915 -0.6681 2.1831 39 1 5.8671 -1.1996 3.9192 40 1 2.2491 -1.6319 -1.1525 41 1 2.5423 0.8911 -4.7809 42 1 3.5947 -2.7764 -5.1507 43 1 5.1347 -4.0041 -9.9204 44 1 3.2225 0.8689 -7.3816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769282915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:33 Heat of formation + Delta-G solvation = 25.966270 kcal Electronic energy + Delta-G solvation = -25951.091585 eV Core-core repulsion = 22099.020114 eV Total energy + Delta-G solvation = -3852.071471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.55620 -39.58704 -38.35181 -37.79177 -36.24561 -34.37666 -33.20433 -32.15179 -30.33112 -29.99066 -28.04305 -25.60249 -24.77552 -23.84659 -22.62411 -21.30194 -20.88054 -20.65514 -20.34869 -19.46733 -18.11933 -17.46241 -16.67934 -15.94333 -15.65206 -15.51872 -15.33098 -15.15561 -14.70491 -14.15759 -14.07177 -13.95486 -13.71073 -13.55142 -13.18484 -12.98550 -12.82287 -12.41316 -12.02598 -11.80108 -11.73738 -11.64215 -11.57482 -11.44672 -11.27258 -11.20755 -11.08117 -10.84914 -10.58336 -10.43016 -10.28507 -10.13561 -9.28381 -9.22335 -9.10782 -8.87620 -8.13119 -6.77964 -6.60491 -4.27922 1.67205 2.62068 2.94340 3.03504 3.07220 3.33622 3.51842 3.72002 3.75958 3.98272 4.19875 4.37120 4.57664 4.60446 4.63016 4.70675 4.83865 4.92971 4.98027 5.01888 5.09471 5.23180 5.37831 5.40245 5.45939 5.51402 5.66599 5.67943 5.73860 5.86359 5.89242 6.00797 6.08613 6.19938 6.29717 6.35952 6.75923 6.88407 6.92426 7.16224 7.24935 7.76951 7.87252 8.11280 8.18430 8.49098 8.69595 9.31015 9.59713 10.35259 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020184 B = 0.002317 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.896189 B =12082.149705 C =12996.352766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.139 3.861 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.093 4.093 6 C -0.153 4.153 7 C -0.181 4.181 8 C -0.184 4.184 9 N -0.699 5.699 10 C 0.516 3.484 11 O -0.529 6.529 12 C 0.482 3.518 13 O -0.524 6.524 14 N -0.584 5.584 15 C -0.069 4.069 16 C -0.027 4.027 17 N -0.261 5.261 18 N -0.138 5.138 19 C -0.322 4.322 20 H 0.118 0.882 21 C 0.046 3.954 22 N -0.768 5.768 23 Si 0.936 3.064 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.266 1.266 27 C -0.078 4.078 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.412 0.588 41 H 0.409 0.591 42 H 0.178 0.822 43 H 0.276 0.724 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.012 4.968 19.910 20.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.035 3.965 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.131 4.131 6 C -0.171 4.171 7 C -0.218 4.218 8 C -0.221 4.221 9 N -0.353 5.353 10 C 0.297 3.703 11 O -0.405 6.405 12 C 0.263 3.737 13 O -0.401 6.401 14 N -0.226 5.226 15 C -0.175 4.175 16 C -0.203 4.203 17 N -0.091 5.091 18 N 0.095 4.905 19 C -0.454 4.454 20 H 0.135 0.865 21 C -0.171 4.171 22 N -0.394 5.394 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.191 1.191 27 C -0.229 4.229 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.249 0.751 41 H 0.244 0.756 42 H 0.194 0.806 43 H 0.087 0.913 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.506 3.847 19.055 19.754 hybrid contribution -0.152 0.804 -0.161 0.834 sum -3.659 4.651 18.894 19.799 Atomic orbital electron populations 1.22191 0.94913 1.02475 1.02741 1.21094 0.94249 0.97682 0.83482 0.89078 1.21888 0.95784 1.01457 0.96956 1.21230 0.95059 1.00497 0.96276 1.22340 0.93105 1.01684 0.99982 1.23064 1.04360 0.91678 1.02708 1.22967 0.96002 1.01246 1.01857 1.45843 1.65756 1.14963 1.08737 1.20287 0.78387 0.86810 0.84786 1.90724 1.49162 1.15598 1.85055 1.19697 0.82508 0.87287 0.84195 1.90653 1.49939 1.15220 1.84295 1.42154 1.60115 1.13243 1.07110 1.17256 1.19852 0.94131 0.86261 1.24144 1.05186 0.94250 0.96681 1.78260 1.25171 1.04216 1.01491 1.44558 1.34235 1.04654 1.07044 1.19877 1.45409 0.98856 0.81284 0.86485 1.25665 0.95717 0.94595 1.01161 1.70199 1.32579 1.00054 1.36581 0.85870 0.79455 0.78454 0.80250 1.19089 1.20097 1.19094 1.21307 1.15427 0.95682 0.90508 0.91472 0.91826 0.92191 0.90902 0.90118 0.91419 0.91244 0.87905 0.89005 0.88505 0.88777 0.89017 0.75122 0.75616 0.80571 0.91301 0.83357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.48 37.16 0.35 -1.04 16 2 C 0.14 1.26 2.57 -67.93 -0.17 1.09 16 3 H 0.09 0.93 7.58 -51.93 -0.39 0.53 16 4 C -0.12 -0.84 4.71 -26.73 -0.13 -0.97 16 5 C -0.09 -0.73 5.38 -26.73 -0.14 -0.88 16 6 C -0.15 -1.13 5.73 -90.61 -0.52 -1.65 16 7 C -0.18 -1.41 10.18 -26.73 -0.27 -1.69 16 8 C -0.18 -1.39 10.25 -26.73 -0.27 -1.66 16 9 N -0.70 -8.02 4.52 -54.28 -0.25 -8.27 16 10 C 0.52 7.70 7.85 -11.65 -0.09 7.61 16 11 O -0.53 -8.61 16.14 5.49 0.09 -8.52 16 12 C 0.48 8.69 7.85 -11.66 -0.09 8.60 16 13 O -0.52 -10.52 13.62 5.45 0.07 -10.44 16 14 N -0.58 -11.04 5.45 -10.45 -0.06 -11.09 16 15 C -0.07 -1.60 6.90 -83.92 -0.58 -2.18 16 16 C -0.03 -0.70 10.85 -17.02 -0.18 -0.88 16 17 N -0.26 -7.48 10.39 30.81 0.32 -7.16 16 18 N -0.14 -3.76 3.73 -11.40 -0.04 -3.80 16 19 C -0.32 -8.42 10.25 -14.82 -0.15 -8.58 16 20 H 0.12 2.72 7.83 -52.48 -0.41 2.31 16 21 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 22 N -0.77 -21.18 11.81 55.50 0.66 -20.53 16 23 Si 0.94 18.69 29.55 -169.99 -5.02 13.67 16 24 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 25 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 27 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.64 7.49 -51.93 -0.39 0.25 16 35 H 0.10 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.82 8.03 -51.93 -0.42 0.40 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.41 4.47 8.07 -40.82 -0.33 4.14 16 41 H 0.41 6.69 8.29 -40.82 -0.34 6.35 16 42 H 0.18 4.44 5.92 -52.49 -0.31 4.13 16 43 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -32.03 376.47 -7.47 -39.50 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -6.37 Total: 14.15 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -2.54 Total: -3.17 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.63 Total: -50.85 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.16 Total: -18.97 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.03 -7.47 -39.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769282915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.464 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds