Wall clock time and date at job start Tue Mar 31 2020 12:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47235 * 2 1 4 4 C 1.53003 * 109.46956 * 120.00051 * 2 1 3 5 5 C 1.52995 * 109.47289 * 185.00127 * 4 2 1 6 6 C 1.53003 * 109.47289 * 179.97438 * 5 4 2 7 7 C 1.53001 * 117.51964 * 116.28130 * 6 5 4 8 8 C 1.52999 * 60.00190 * 107.47982 * 7 6 5 9 9 N 1.46497 * 109.47071 * 239.99414 * 2 1 3 10 10 C 1.34780 * 119.99673 * 85.00675 * 9 2 1 11 11 O 1.21363 * 120.00222 * 359.97438 * 10 9 2 12 12 C 1.49309 * 120.00172 * 180.02562 * 10 9 2 13 13 O 1.21403 * 119.99968 * 359.97438 * 12 10 9 14 14 N 1.34767 * 120.00297 * 179.97438 * 12 10 9 15 15 C 1.40294 * 120.00258 * 179.97438 * 14 12 10 16 16 C 1.40726 * 126.10060 * 359.68840 * 15 14 12 17 17 N 1.30875 * 108.37701 * 179.81519 * 16 15 14 18 18 N 1.40057 * 108.43334 * 0.44852 * 17 16 15 19 19 C 1.37305 * 126.05272 * 179.69549 * 18 17 16 20 20 H 1.08004 * 119.99911 * 180.02562 * 19 18 17 21 21 C 1.39001 * 120.00049 * 0.02562 * 19 18 17 22 22 N 1.31287 * 120.00052 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00156 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47076 * 59.99977 * 23 21 19 25 25 H 1.48494 * 109.47241 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47028 * 300.00496 * 23 21 19 27 27 C 1.35792 * 126.10026 * 180.02562 * 15 14 12 28 28 H 1.09005 * 109.46962 * 300.00339 * 1 2 3 29 29 H 1.09000 * 109.46350 * 59.99830 * 1 2 3 30 30 H 1.08996 * 109.47235 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47309 * 64.99443 * 4 2 1 32 32 H 1.09005 * 109.46839 * 304.99723 * 4 2 1 33 33 H 1.08999 * 109.47504 * 59.99435 * 5 4 2 34 34 H 1.09005 * 109.46851 * 299.99589 * 5 4 2 35 35 H 1.09002 * 115.54973 * 330.57913 * 6 5 4 36 36 H 1.09001 * 117.49733 * 214.97413 * 7 6 5 37 37 H 1.08995 * 117.49577 * 359.97438 * 7 6 5 38 38 H 1.09004 * 117.50150 * 252.51496 * 8 7 6 39 39 H 1.09004 * 117.49681 * 107.48417 * 8 7 6 40 40 H 0.97000 * 120.00483 * 264.99856 * 9 2 1 41 41 H 0.97007 * 120.00018 * 0.02562 * 14 12 10 42 42 H 1.07994 * 125.80516 * 359.97438 * 16 15 14 43 43 H 0.96997 * 119.99643 * 179.97438 * 22 21 19 44 44 H 1.07995 * 126.25364 * 359.94963 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0747 -1.3341 2.5634 7 6 4.9746 -2.5543 2.3580 8 6 5.5706 -1.2419 2.8711 9 7 2.0183 -0.6907 -1.1961 10 6 2.1472 -0.0184 -2.3571 11 8 1.8582 1.1591 -2.4118 12 6 2.6443 -0.7224 -3.5763 13 8 2.9329 -1.9003 -3.5218 14 7 2.7726 -0.0502 -4.7374 15 6 3.2402 -0.7116 -5.8828 16 6 3.6162 -2.0653 -5.9633 17 7 3.9931 -2.3166 -7.1911 18 7 3.8834 -1.1371 -7.9383 19 6 4.1916 -0.9914 -9.2683 20 1 4.0698 -0.0318 -9.7489 21 6 4.6603 -2.0788 -9.9963 22 7 4.8080 -3.2453 -9.4122 23 14 5.0789 -1.8808 -11.8060 24 1 6.1467 -0.8599 -11.9583 25 1 5.5533 -3.1788 -12.3492 26 1 3.8690 -1.4461 -12.5492 27 6 3.4169 -0.1581 -7.1102 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.7516 -1.7715 1.2057 32 1 1.6053 -0.2617 2.1370 33 1 3.8532 0.4369 1.3574 34 1 3.9994 -1.0729 0.4261 35 1 3.3871 -1.3524 3.4090 36 1 4.8790 -3.3754 3.0684 37 1 5.2032 -2.8440 1.3324 38 1 6.1915 -0.6681 2.1831 39 1 5.8671 -1.1996 3.9192 40 1 2.2491 -1.6319 -1.1525 41 1 2.5423 0.8911 -4.7809 42 1 3.5947 -2.7764 -5.1507 43 1 5.1347 -4.0041 -9.9204 44 1 3.2225 0.8689 -7.3816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769282915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:32 Heat of formation + Delta-G solvation = 5.040260 kcal Electronic energy + Delta-G solvation = -25951.999005 eV Core-core repulsion = 22099.020114 eV Total energy + Delta-G solvation = -3852.978891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.04244 -41.22716 -39.62593 -38.68825 -37.17465 -36.03996 -35.00880 -33.07809 -32.29850 -30.72449 -29.86441 -27.26996 -25.93690 -24.96433 -23.22621 -22.95785 -22.10940 -21.59521 -21.25588 -21.23785 -19.61029 -19.14132 -17.82662 -17.44946 -16.96590 -16.80843 -16.57547 -16.49431 -15.74011 -15.57601 -15.32122 -15.12987 -14.89452 -14.83063 -14.54235 -14.48269 -13.69877 -13.51256 -13.38736 -13.12276 -12.95785 -12.88717 -12.67454 -12.45494 -12.40896 -12.28506 -12.13480 -12.01614 -11.96403 -11.73520 -11.05960 -11.05420 -10.87897 -10.74329 -10.55604 -10.25794 -10.14588 -8.62801 -8.49115 -6.27048 0.30166 1.30457 1.32894 1.42544 1.57087 1.72973 2.04924 2.12369 2.53664 2.59711 2.91748 2.95260 3.07317 3.51449 3.59108 3.94869 4.00675 4.09396 4.19619 4.30659 4.39063 4.42231 4.51815 4.61684 4.76369 4.77916 4.81478 4.87560 4.94939 4.97263 4.99816 5.07530 5.11672 5.21358 5.23343 5.27056 5.30168 5.31722 5.43257 5.49048 5.90123 6.03411 6.25330 6.49686 6.67267 6.83255 7.07890 7.40678 7.62221 8.49908 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020184 B = 0.002317 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.896189 B =12082.149705 C =12996.352766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.136 3.864 3 H 0.083 0.917 4 C -0.113 4.113 5 C -0.094 4.094 6 C -0.147 4.147 7 C -0.190 4.190 8 C -0.189 4.189 9 N -0.682 5.682 10 C 0.525 3.475 11 O -0.541 6.541 12 C 0.484 3.516 13 O -0.544 6.544 14 N -0.583 5.583 15 C -0.056 4.056 16 C -0.049 4.049 17 N -0.308 5.308 18 N -0.163 5.163 19 C -0.354 4.354 20 H 0.142 0.858 21 C -0.005 4.005 22 N -0.821 5.821 23 Si 1.020 2.980 24 H -0.253 1.253 25 H -0.277 1.277 26 H -0.254 1.254 27 C -0.076 4.076 28 H 0.091 0.909 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.416 0.584 41 H 0.423 0.577 42 H 0.176 0.824 43 H 0.278 0.722 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.907 6.520 21.042 22.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.033 3.967 3 H 0.102 0.898 4 C -0.150 4.150 5 C -0.131 4.131 6 C -0.165 4.165 7 C -0.227 4.227 8 C -0.226 4.226 9 N -0.335 5.335 10 C 0.305 3.695 11 O -0.419 6.419 12 C 0.266 3.734 13 O -0.422 6.422 14 N -0.228 5.228 15 C -0.163 4.163 16 C -0.224 4.224 17 N -0.139 5.139 18 N 0.069 4.931 19 C -0.485 4.485 20 H 0.159 0.841 21 C -0.217 4.217 22 N -0.449 5.449 23 Si 0.838 3.162 24 H -0.177 1.177 25 H -0.202 1.202 26 H -0.177 1.177 27 C -0.227 4.227 28 H 0.110 0.890 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.124 0.876 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.138 0.862 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.122 0.878 40 H 0.254 0.746 41 H 0.260 0.740 42 H 0.192 0.808 43 H 0.088 0.912 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -4.423 5.422 20.248 21.423 hybrid contribution 0.080 0.354 -0.294 0.467 sum -4.344 5.776 19.954 21.222 Atomic orbital electron populations 1.22169 0.93926 1.02969 1.02885 1.21347 0.94936 0.97341 0.83050 0.89848 1.21853 0.94836 1.01864 0.96471 1.21210 0.95864 1.00189 0.95848 1.22390 0.93170 1.00858 1.00094 1.23092 1.05070 0.92249 1.02307 1.23030 0.96293 1.00923 1.02350 1.45923 1.64101 1.15121 1.08382 1.19632 0.78840 0.86456 0.84572 1.90728 1.50219 1.15853 1.85115 1.20387 0.81098 0.87090 0.84868 1.90642 1.50341 1.16424 1.84803 1.42102 1.60522 1.13871 1.06307 1.17299 1.18208 0.93198 0.87550 1.24247 1.06207 0.95768 0.96209 1.78155 1.26864 1.06192 1.02733 1.44839 1.35538 1.04884 1.07822 1.20623 1.46086 1.00342 0.81418 0.84098 1.26892 0.94734 0.93768 1.06349 1.70373 1.34372 1.01252 1.38868 0.84642 0.79695 0.78468 0.73356 1.17742 1.20194 1.17749 1.22006 1.13750 0.96808 0.90109 0.88997 0.94031 0.91519 0.90106 0.87621 0.91704 0.93141 0.86235 0.88040 0.89809 0.89620 0.87844 0.74628 0.73960 0.80770 0.91223 0.79516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.48 71.98 0.68 -1.65 16 2 C 0.14 2.18 2.57 44.99 0.12 2.30 16 3 H 0.08 1.53 7.58 -2.39 -0.02 1.52 16 4 C -0.11 -1.22 4.71 30.59 0.14 -1.08 16 5 C -0.09 -1.32 5.38 30.59 0.16 -1.15 16 6 C -0.15 -1.89 5.73 -10.79 -0.06 -1.95 16 7 C -0.19 -2.79 10.18 30.59 0.31 -2.48 16 8 C -0.19 -2.65 10.25 30.60 0.31 -2.34 16 9 N -0.68 -14.80 4.52 -444.01 -2.01 -16.81 16 10 C 0.52 15.17 7.85 87.23 0.68 15.85 16 11 O -0.54 -16.95 16.14 -3.29 -0.05 -17.01 16 12 C 0.48 17.29 7.85 87.23 0.69 17.98 16 13 O -0.54 -22.08 13.62 -3.41 -0.05 -22.12 16 14 N -0.58 -21.73 5.45 -305.33 -1.66 -23.40 16 15 C -0.06 -2.61 6.90 37.83 0.26 -2.35 16 16 C -0.05 -2.62 10.85 85.44 0.93 -1.70 16 17 N -0.31 -18.34 10.39 -56.44 -0.59 -18.93 16 18 N -0.16 -9.01 3.73 -189.97 -0.71 -9.72 16 19 C -0.35 -18.60 10.25 84.02 0.86 -17.74 16 20 H 0.14 6.41 7.83 -2.91 -0.02 6.39 16 21 C -0.01 -0.27 5.50 84.96 0.47 0.20 16 22 N -0.82 -46.84 11.81 21.66 0.26 -46.59 16 23 Si 1.02 38.16 29.55 68.60 2.03 40.19 16 24 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 25 H -0.28 -10.26 7.11 99.48 0.71 -9.55 16 26 H -0.25 -8.88 7.11 99.48 0.71 -8.18 16 27 C -0.08 -3.55 11.50 83.41 0.96 -2.59 16 28 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 0.90 7.49 -2.38 -0.02 0.88 16 35 H 0.12 1.16 8.08 -2.39 -0.02 1.14 16 36 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.43 8.03 -2.39 -0.02 1.41 16 38 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.42 8.57 8.07 -92.71 -0.75 7.82 16 41 H 0.42 13.30 8.29 -92.70 -0.77 12.53 16 42 H 0.18 9.17 5.92 -2.91 -0.02 9.15 16 43 H 0.28 14.58 8.31 -92.71 -0.77 13.81 16 44 H 0.19 6.99 8.06 -2.91 -0.02 6.97 16 Total: -1.00 -71.94 376.47 3.25 -68.68 By element: Atomic # 1 Polarization: 44.87 SS G_CDS: -0.48 Total: 44.39 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 6.51 Total: 1.31 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -4.71 Total: -115.44 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -0.10 Total: -39.13 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -71.94 3.25 -68.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769282915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.724 kcal (2) G-P(sol) polarization free energy of solvation -71.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds