Wall clock time and date at job start Tue Mar 31 2020 12:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47150 * 2 1 4 4 C 1.53003 * 109.47064 * 240.00010 * 2 1 3 5 5 C 1.53005 * 109.47285 * 174.99436 * 4 2 1 6 6 C 1.52995 * 109.47069 * 180.02562 * 5 4 2 7 7 C 1.52999 * 117.49857 * 243.62391 * 6 5 4 8 8 C 1.52994 * 60.00119 * 252.51414 * 7 6 5 9 9 N 1.46492 * 109.47488 * 120.00064 * 2 1 3 10 10 C 1.34777 * 120.00210 * 275.00115 * 9 2 1 11 11 O 1.21366 * 119.99945 * 0.02562 * 10 9 2 12 12 C 1.49308 * 120.00039 * 179.97438 * 10 9 2 13 13 O 1.21402 * 120.00171 * 0.02562 * 12 10 9 14 14 N 1.34783 * 119.99844 * 179.97438 * 12 10 9 15 15 C 1.40291 * 119.99844 * 180.02562 * 14 12 10 16 16 C 1.40715 * 126.10260 * 359.69741 * 15 14 12 17 17 N 1.30877 * 108.37847 * 179.81244 * 16 15 14 18 18 N 1.40070 * 108.43265 * 0.44408 * 17 16 15 19 19 C 1.37291 * 126.05355 * 179.69740 * 18 17 16 20 20 H 1.07993 * 119.99906 * 174.15479 * 19 18 17 21 21 C 1.39007 * 119.99957 * 354.14925 * 19 18 17 22 22 N 1.31283 * 120.00122 * 5.94604 * 21 19 18 23 23 Si 1.86805 * 119.99834 * 185.93791 * 21 19 18 24 24 H 1.48501 * 109.46946 * 94.98497 * 23 21 19 25 25 H 1.48503 * 109.47235 * 214.98145 * 23 21 19 26 26 H 1.48499 * 109.47212 * 334.98563 * 23 21 19 27 27 C 1.35790 * 126.09770 * 180.02562 * 15 14 12 28 28 H 1.08995 * 109.47523 * 60.00170 * 1 2 3 29 29 H 1.09006 * 109.46767 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47151 * 299.99435 * 1 2 3 31 31 H 1.09008 * 109.46890 * 55.00265 * 4 2 1 32 32 H 1.08998 * 109.47131 * 295.00042 * 4 2 1 33 33 H 1.08998 * 109.47074 * 300.00637 * 5 4 2 34 34 H 1.09008 * 109.46480 * 60.00578 * 5 4 2 35 35 H 1.09000 * 115.55195 * 29.33472 * 6 5 4 36 36 H 1.09007 * 117.50234 * 359.97438 * 7 6 5 37 37 H 1.08996 * 117.50258 * 145.02414 * 7 6 5 38 38 H 1.09006 * 117.50093 * 252.50856 * 8 7 6 39 39 H 1.09003 * 117.50104 * 107.49054 * 8 7 6 40 40 H 0.97007 * 120.00096 * 94.99339 * 9 2 1 41 41 H 0.97004 * 119.99850 * 0.02562 * 14 12 10 42 42 H 1.08003 * 125.81145 * 359.97438 * 16 15 14 43 43 H 0.97001 * 119.99800 * 179.97438 * 22 21 19 44 44 H 1.07999 * 126.25210 * 359.97145 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0747 -1.3339 -2.5634 7 6 4.9764 -2.5526 -2.3575 8 6 5.5703 -1.2400 -2.8722 9 7 2.0184 -0.6906 1.1961 10 6 2.1471 -0.0183 2.3571 11 8 1.8580 1.1592 2.4117 12 6 2.6444 -0.7223 3.5762 13 8 2.9332 -1.9002 3.5217 14 7 2.7736 -0.0498 4.7371 15 6 3.2413 -0.7112 5.8826 16 6 3.6051 -2.0679 5.9662 17 7 3.9939 -2.3162 7.1909 18 7 3.8851 -1.1363 7.9379 19 6 4.1931 -0.9906 9.2679 20 1 4.1623 -0.0129 9.7253 21 6 4.5446 -2.1017 10.0256 22 7 4.6958 -3.2702 9.4465 23 14 4.8019 -1.9323 11.8681 24 1 3.5466 -2.2867 12.5779 25 1 5.8903 -2.8447 12.3019 26 1 5.1734 -0.5308 12.1892 27 6 3.4179 -0.1577 7.1099 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.6053 -0.2617 -2.1370 32 1 1.7516 -1.7715 -1.2056 33 1 3.8531 0.4371 -1.3574 34 1 3.9995 -1.0728 -0.4261 35 1 3.3865 -1.3536 -3.4085 36 1 5.2068 -2.8408 -1.3318 37 1 4.8816 -3.3746 -3.0671 38 1 5.8661 -1.1982 -3.9206 39 1 6.1909 -0.6647 -2.1852 40 1 2.2490 -1.6318 1.1525 41 1 2.5432 0.8915 4.7806 42 1 3.5718 -2.7822 5.1567 43 1 4.9414 -4.0454 9.9752 44 1 3.2246 0.8697 7.3810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769282918.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:36 Heat of formation + Delta-G solvation = 25.756181 kcal Electronic energy + Delta-G solvation = -25949.604327 eV Core-core repulsion = 22097.523746 eV Total energy + Delta-G solvation = -3852.080581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.55762 -39.58912 -38.35336 -37.79344 -36.24674 -34.37828 -33.20682 -32.15280 -30.33431 -29.99162 -28.04603 -25.60429 -24.77645 -23.84791 -22.62394 -21.30322 -20.88205 -20.65641 -20.35011 -19.46749 -18.12148 -17.46487 -16.68025 -15.94410 -15.65216 -15.53092 -15.33008 -15.15519 -14.70541 -14.15645 -14.07294 -13.95248 -13.71604 -13.54679 -13.19052 -12.99257 -12.82452 -12.41333 -12.02667 -11.80167 -11.75160 -11.64256 -11.57861 -11.44931 -11.31375 -11.18620 -11.08036 -10.83803 -10.55189 -10.43053 -10.28337 -10.13638 -9.28688 -9.23300 -9.10795 -8.87597 -8.13157 -6.78117 -6.61469 -4.28278 1.67011 2.61919 2.92969 3.03649 3.08769 3.33459 3.51795 3.71725 3.75656 3.98137 4.19823 4.36851 4.57567 4.60388 4.62964 4.70606 4.83795 4.92920 4.96737 5.01789 5.09403 5.23049 5.37779 5.40189 5.45883 5.51354 5.66543 5.67870 5.73793 5.86286 5.89179 6.00728 6.08541 6.19743 6.29613 6.36078 6.75853 6.88976 6.92210 7.15950 7.24765 7.77009 7.87226 8.11072 8.18267 8.48886 8.69323 9.31091 9.59415 10.34638 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020493 B = 0.002310 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.983541 B =12118.928372 C =13011.704911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.139 3.861 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.093 4.093 6 C -0.153 4.153 7 C -0.181 4.181 8 C -0.184 4.184 9 N -0.699 5.699 10 C 0.516 3.484 11 O -0.529 6.529 12 C 0.482 3.518 13 O -0.523 6.523 14 N -0.584 5.584 15 C -0.069 4.069 16 C -0.027 4.027 17 N -0.261 5.261 18 N -0.139 5.139 19 C -0.322 4.322 20 H 0.118 0.882 21 C 0.047 3.953 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.263 1.263 27 C -0.077 4.077 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.412 0.588 41 H 0.409 0.591 42 H 0.178 0.822 43 H 0.276 0.724 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.038 4.989 -19.944 20.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.035 3.965 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.131 4.131 6 C -0.171 4.171 7 C -0.218 4.218 8 C -0.221 4.221 9 N -0.353 5.353 10 C 0.297 3.703 11 O -0.405 6.405 12 C 0.263 3.737 13 O -0.401 6.401 14 N -0.226 5.226 15 C -0.175 4.175 16 C -0.202 4.202 17 N -0.092 5.092 18 N 0.095 4.905 19 C -0.455 4.455 20 H 0.136 0.864 21 C -0.171 4.171 22 N -0.393 5.393 23 Si 0.759 3.241 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.187 1.187 27 C -0.228 4.228 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.249 0.751 41 H 0.244 0.756 42 H 0.194 0.806 43 H 0.086 0.914 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.529 3.875 -19.090 19.797 hybrid contribution -0.225 0.778 0.174 0.829 sum -3.754 4.654 -18.916 19.838 Atomic orbital electron populations 1.22190 0.94913 1.02476 1.02743 1.21092 0.94248 0.97685 0.83482 0.89078 1.21890 0.95785 1.01456 0.96955 1.21232 0.95059 1.00497 0.96277 1.22337 0.93092 1.01694 0.99982 1.23065 1.04352 0.91689 1.02704 1.22966 0.96023 1.01240 1.01851 1.45843 1.65751 1.14963 1.08738 1.20285 0.78390 0.86811 0.84785 1.90725 1.49159 1.15598 1.85055 1.19701 0.82497 0.87287 0.84191 1.90652 1.49931 1.15227 1.84284 1.42157 1.60117 1.13243 1.07122 1.17256 1.19997 0.93932 0.86310 1.24141 1.05304 0.94118 0.96670 1.78257 1.24875 1.04552 1.01519 1.44561 1.34158 1.04823 1.07007 1.19926 1.48192 0.96656 0.80694 0.86427 1.25671 0.95485 0.94634 1.01313 1.70214 1.33176 0.99560 1.36396 0.85791 0.78642 0.79176 0.80444 1.19582 1.20058 1.18709 1.21313 1.15173 0.95791 0.90549 0.91477 0.92193 0.91819 0.90118 0.90902 0.91419 0.91243 0.87901 0.88504 0.89003 0.89018 0.88779 0.75121 0.75611 0.80571 0.91365 0.83346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.48 37.16 0.35 -1.04 16 2 C 0.14 1.26 2.57 -67.93 -0.17 1.09 16 3 H 0.09 0.93 7.58 -51.93 -0.39 0.53 16 4 C -0.12 -0.84 4.71 -26.73 -0.13 -0.96 16 5 C -0.09 -0.73 5.38 -26.73 -0.14 -0.87 16 6 C -0.15 -1.13 5.74 -90.62 -0.52 -1.65 16 7 C -0.18 -1.41 10.18 -26.73 -0.27 -1.68 16 8 C -0.18 -1.39 10.25 -26.73 -0.27 -1.66 16 9 N -0.70 -8.01 4.52 -54.29 -0.25 -8.26 16 10 C 0.52 7.69 7.85 -11.65 -0.09 7.60 16 11 O -0.53 -8.61 16.14 5.48 0.09 -8.52 16 12 C 0.48 8.69 7.85 -11.65 -0.09 8.59 16 13 O -0.52 -10.51 13.62 5.45 0.07 -10.43 16 14 N -0.58 -11.03 5.45 -10.46 -0.06 -11.08 16 15 C -0.07 -1.60 6.90 -83.93 -0.58 -2.18 16 16 C -0.03 -0.69 10.84 -17.02 -0.18 -0.87 16 17 N -0.26 -7.50 10.41 30.81 0.32 -7.18 16 18 N -0.14 -3.77 3.73 -11.40 -0.04 -3.82 16 19 C -0.32 -8.44 10.24 -14.82 -0.15 -8.59 16 20 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 21 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 22 N -0.77 -21.16 11.84 55.50 0.66 -20.50 16 23 Si 0.94 18.71 29.56 -169.99 -5.02 13.68 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 25 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 26 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 27 C -0.08 -1.81 11.50 -16.38 -0.19 -2.00 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.64 7.49 -51.92 -0.39 0.25 16 35 H 0.10 0.66 8.07 -51.93 -0.42 0.24 16 36 H 0.10 0.82 8.03 -51.93 -0.42 0.40 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.41 4.46 8.07 -40.82 -0.33 4.13 16 41 H 0.41 6.68 8.29 -40.82 -0.34 6.34 16 42 H 0.18 4.43 5.92 -52.48 -0.31 4.12 16 43 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -32.04 376.51 -7.47 -39.51 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -6.37 Total: 14.07 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -2.54 Total: -3.14 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.63 Total: -50.84 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.16 Total: -18.95 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.68 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.04 -7.47 -39.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769282918.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.263 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds