Wall clock time and date at job start Tue Mar 31 2020 12:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 119.99954 * 2 1 4 4 C 1.52998 * 109.47082 * 125.00273 * 3 2 1 5 5 C 1.53002 * 109.47034 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47286 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46909 * 54.99917 * 6 5 4 8 8 C 1.52996 * 109.47156 * 174.99576 * 6 5 4 9 9 N 1.46491 * 109.47355 * 295.00098 * 6 5 4 10 10 C 1.34775 * 120.00602 * 154.99940 * 9 6 5 11 11 O 1.21366 * 119.99633 * 359.97438 * 10 9 6 12 12 C 1.49310 * 120.00762 * 179.97438 * 10 9 6 13 13 O 1.21407 * 119.99220 * 359.97438 * 12 10 9 14 14 N 1.34769 * 120.00412 * 180.02562 * 12 10 9 15 15 C 1.40291 * 120.00128 * 180.02562 * 14 12 10 16 16 C 1.40719 * 126.10262 * 359.97138 * 15 14 12 17 17 N 1.30876 * 108.38100 * 179.73879 * 16 15 14 18 18 N 1.40063 * 108.42913 * 0.44672 * 17 16 15 19 19 C 1.37301 * 126.05067 * 179.81431 * 18 17 16 20 20 H 1.08002 * 119.99622 * 179.68466 * 19 18 17 21 21 C 1.39003 * 119.99972 * 359.96617 * 19 18 17 22 22 N 1.31284 * 120.00043 * 359.72316 * 21 19 18 23 23 Si 1.86801 * 119.99884 * 179.72361 * 21 19 18 24 24 H 1.48494 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46780 * 119.99905 * 23 21 19 26 26 H 1.48493 * 109.47151 * 239.99809 * 23 21 19 27 27 C 1.35786 * 126.10012 * 179.97438 * 15 14 12 28 28 H 1.08001 * 120.00483 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00127 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99731 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47421 * 4.99504 * 3 2 1 32 32 H 1.09002 * 109.46796 * 244.99918 * 3 2 1 33 33 H 1.08995 * 109.47621 * 59.99353 * 4 3 2 34 34 H 1.09003 * 109.46546 * 299.99261 * 4 3 2 35 35 H 1.09003 * 109.47247 * 59.98984 * 5 4 3 36 36 H 1.09002 * 109.46829 * 299.99637 * 5 4 3 37 37 H 1.08999 * 109.46933 * 60.00355 * 8 6 5 38 38 H 1.08997 * 109.47061 * 179.97438 * 8 6 5 39 39 H 1.09000 * 109.47377 * 300.00397 * 8 6 5 40 40 H 0.97005 * 119.99874 * 334.99464 * 9 6 5 41 41 H 0.97005 * 119.99874 * 359.97438 * 14 12 10 42 42 H 1.08003 * 125.80725 * 0.02997 * 16 15 14 43 43 H 0.97004 * 119.99619 * 180.02562 * 22 21 19 44 44 H 1.08004 * 126.25530 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8005 2.6579 1.1812 6 6 4.7716 2.6861 2.3631 7 1 5.4189 1.8101 2.3225 8 6 5.6246 3.9543 2.2921 9 7 4.0148 2.6762 3.6174 10 6 4.5830 2.2018 4.7436 11 8 5.7216 1.7823 4.7186 12 6 3.8118 2.1922 6.0222 13 8 2.6730 2.6123 6.0472 14 7 4.3802 1.7183 7.1485 15 6 3.6554 1.7088 8.3496 16 6 2.3344 2.1609 8.5245 17 7 2.0012 1.9869 9.7781 18 7 3.0940 1.4289 10.4534 19 6 3.1392 1.1021 11.7862 20 1 4.0355 0.6700 12.2061 21 6 2.0293 1.3220 12.5937 22 7 0.9397 1.8471 12.0831 23 14 2.0881 0.8702 14.4053 24 1 3.4197 0.2987 14.7299 25 1 1.8570 2.0858 15.2263 26 1 1.0341 -0.1336 14.6995 27 6 4.1035 1.2617 9.5509 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 3.7399 0.5065 1.0921 34 1 2.4771 1.2357 2.1129 35 1 3.0958 3.4847 1.2704 36 1 4.3583 2.7548 0.2498 37 1 4.9773 4.8303 2.3328 38 1 6.3161 3.9746 3.1344 39 1 6.1877 3.9616 1.3589 40 1 3.1046 3.0112 3.6373 41 1 5.2903 1.3830 7.1285 42 1 1.7014 2.5762 7.7541 43 1 0.1654 2.0009 12.6468 44 1 5.0806 0.8492 9.7549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776067156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:29 Heat of formation + Delta-G solvation = 17.000489 kcal Electronic energy + Delta-G solvation = -25817.739407 eV Core-core repulsion = 21965.279151 eV Total energy + Delta-G solvation = -3852.460256 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.55107 -39.57790 -38.17077 -37.14049 -35.50069 -34.34602 -33.20075 -32.29900 -30.54465 -30.30416 -28.04214 -26.68527 -25.49821 -24.14914 -22.29254 -21.26481 -20.90496 -20.34828 -19.99327 -19.46221 -18.11417 -17.46216 -16.69945 -15.84762 -15.63520 -15.52973 -15.33999 -15.12508 -14.49341 -14.41224 -14.10760 -13.91374 -13.58552 -13.47116 -13.27699 -13.01187 -12.98462 -12.58698 -12.27442 -11.93360 -11.74805 -11.68553 -11.55247 -11.30777 -11.26303 -11.20481 -11.03897 -10.83233 -10.81003 -10.53047 -10.29288 -9.57984 -9.28104 -9.23332 -9.10574 -8.87511 -8.12900 -6.77735 -6.60667 -4.27804 1.67476 2.03315 2.62227 2.92413 3.03930 3.09677 3.33805 3.72276 3.75570 3.98478 4.28303 4.37381 4.57150 4.62003 4.66516 4.80871 4.93082 4.98054 5.02584 5.09213 5.22346 5.28464 5.30839 5.47390 5.49156 5.56281 5.66635 5.73864 5.89350 5.99048 6.04270 6.20087 6.29563 6.36210 6.37776 6.51245 6.76168 6.89055 6.92662 7.16323 7.24999 7.77317 7.87541 8.11515 8.18643 8.49325 8.69806 9.31299 9.59911 10.35196 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018053 B = 0.002320 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.580540 B =12067.621818 C =13142.678964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.156 4.156 3 C -0.094 4.094 4 C -0.119 4.119 5 C -0.127 4.127 6 C 0.140 3.860 7 H 0.091 0.909 8 C -0.165 4.165 9 N -0.699 5.699 10 C 0.516 3.484 11 O -0.529 6.529 12 C 0.482 3.518 13 O -0.523 6.523 14 N -0.584 5.584 15 C -0.069 4.069 16 C -0.027 4.027 17 N -0.260 5.260 18 N -0.139 5.139 19 C -0.321 4.321 20 H 0.118 0.882 21 C 0.046 3.954 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.273 1.273 27 C -0.077 4.077 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.412 0.588 41 H 0.409 0.591 42 H 0.178 0.822 43 H 0.275 0.725 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.956 0.279 -20.456 21.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.174 4.174 3 C -0.131 4.131 4 C -0.157 4.157 5 C -0.165 4.165 6 C 0.035 3.965 7 H 0.109 0.891 8 C -0.223 4.223 9 N -0.353 5.353 10 C 0.298 3.702 11 O -0.406 6.406 12 C 0.263 3.737 13 O -0.401 6.401 14 N -0.226 5.226 15 C -0.175 4.175 16 C -0.203 4.203 17 N -0.091 5.091 18 N 0.094 4.906 19 C -0.454 4.454 20 H 0.136 0.864 21 C -0.172 4.172 22 N -0.394 5.394 23 Si 0.760 3.240 24 H -0.186 1.186 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.229 4.229 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.249 0.751 41 H 0.244 0.756 42 H 0.194 0.806 43 H 0.086 0.914 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.814 0.484 -19.520 19.895 hybrid contribution 0.761 -0.373 0.159 0.863 sum 4.575 0.110 -19.361 19.894 Atomic orbital electron populations 1.23871 0.96027 1.01886 1.01363 1.22971 0.96079 0.98584 0.99730 1.20772 0.98198 0.95440 0.98677 1.21587 0.98040 0.97297 0.98770 1.21932 0.98361 0.98494 0.97692 1.21080 0.93302 0.99673 0.82407 0.89081 1.22193 1.00172 0.97342 1.02631 1.45834 1.18635 1.62958 1.07852 1.20284 0.86634 0.78031 0.85297 1.90724 1.17935 1.46004 1.85895 1.19696 0.87246 0.82192 0.84540 1.90654 1.17653 1.46773 1.85007 1.42151 1.16602 1.57665 1.06213 1.17253 0.95279 1.19950 0.84993 1.24147 0.94259 1.06000 0.95859 1.78261 1.07659 1.19786 1.03414 1.44573 1.06501 1.33139 1.06346 1.19971 1.02177 1.43000 0.80212 0.86396 1.25671 0.94669 0.95565 1.01265 1.70220 1.02009 1.30957 1.36196 0.85739 0.79249 0.78721 0.80311 1.18622 1.19861 1.19870 1.21309 0.96504 1.15749 0.89330 0.88600 0.88585 0.87506 0.91453 0.91113 0.91634 0.91266 0.91015 0.90113 0.92210 0.91824 0.91477 0.75129 0.75615 0.80568 0.91415 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.54 14.32 29.02 0.42 -1.13 16 2 C -0.16 -1.23 9.52 -36.02 -0.34 -1.57 16 3 C -0.09 -0.65 5.66 -27.88 -0.16 -0.81 16 4 C -0.12 -0.91 5.08 -26.73 -0.14 -1.04 16 5 C -0.13 -0.84 4.75 -26.73 -0.13 -0.96 16 6 C 0.14 1.26 2.57 -67.94 -0.17 1.08 16 7 H 0.09 0.93 7.58 -51.93 -0.39 0.53 16 8 C -0.17 -1.39 9.48 37.16 0.35 -1.04 16 9 N -0.70 -8.03 4.52 -54.29 -0.25 -8.28 16 10 C 0.52 7.72 7.85 -11.65 -0.09 7.63 16 11 O -0.53 -8.63 16.14 5.48 0.09 -8.54 16 12 C 0.48 8.72 7.85 -11.65 -0.09 8.63 16 13 O -0.52 -10.56 13.62 5.45 0.07 -10.48 16 14 N -0.58 -11.06 5.45 -10.46 -0.06 -11.12 16 15 C -0.07 -1.60 6.90 -83.93 -0.58 -2.18 16 16 C -0.03 -0.70 10.84 -17.02 -0.18 -0.88 16 17 N -0.26 -7.49 10.39 30.81 0.32 -7.17 16 18 N -0.14 -3.78 3.73 -11.40 -0.04 -3.82 16 19 C -0.32 -8.42 10.25 -14.82 -0.15 -8.57 16 20 H 0.12 2.76 7.83 -52.49 -0.41 2.35 16 21 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 22 N -0.77 -21.19 11.81 55.50 0.66 -20.53 16 23 Si 0.94 18.72 29.55 -169.99 -5.02 13.70 16 24 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 27 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 28 H 0.10 0.69 8.06 -52.49 -0.42 0.27 16 29 H 0.10 0.71 7.84 -52.49 -0.41 0.30 16 30 H 0.11 0.80 8.06 -52.48 -0.42 0.38 16 31 H 0.07 0.45 7.79 -51.93 -0.40 0.05 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.64 7.75 -51.93 -0.40 0.24 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.41 4.47 8.07 -40.82 -0.33 4.14 16 41 H 0.41 6.70 8.29 -40.82 -0.34 6.36 16 42 H 0.18 4.45 5.92 -52.48 -0.31 4.14 16 43 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.15 2.94 8.06 -52.48 -0.42 2.51 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -32.26 379.16 -6.43 -38.70 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -6.36 Total: 13.61 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -1.55 Total: -1.77 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.63 Total: -50.93 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.16 Total: -19.03 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.26 -6.43 -38.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776067156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.698 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds