Wall clock time and date at job start Tue Mar 31 2020 12:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99771 * 2 1 4 4 C 1.53006 * 109.47184 * 125.00213 * 3 2 1 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47131 * 180.02562 * 5 4 3 7 7 H 1.09006 * 109.46758 * 304.99395 * 6 5 4 8 8 C 1.53001 * 109.47042 * 185.00232 * 6 5 4 9 9 N 1.46493 * 109.47485 * 64.99753 * 6 5 4 10 10 C 1.34778 * 120.00226 * 205.00306 * 9 6 5 11 11 O 1.21364 * 119.99945 * 359.97438 * 10 9 6 12 12 C 1.49304 * 119.99833 * 180.02562 * 10 9 6 13 13 O 1.21405 * 120.00487 * 359.97438 * 12 10 9 14 14 N 1.34778 * 119.99833 * 179.97438 * 12 10 9 15 15 C 1.40294 * 120.00192 * 179.97438 * 14 12 10 16 16 C 1.40725 * 126.10009 * 359.69412 * 15 14 12 17 17 N 1.30875 * 108.38000 * 179.85040 * 16 15 14 18 18 N 1.40065 * 108.42978 * 0.40421 * 17 16 15 19 19 C 1.37302 * 126.05215 * 179.73959 * 18 17 16 20 20 H 1.07994 * 120.00003 * 179.97438 * 19 18 17 21 21 C 1.39004 * 119.99725 * 0.02562 * 19 18 17 22 22 N 1.31279 * 120.00489 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99894 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47266 * 89.99305 * 23 21 19 25 25 H 1.48504 * 109.47452 * 210.00000 * 23 21 19 26 26 H 1.48500 * 109.46935 * 329.99723 * 23 21 19 27 27 C 1.35788 * 126.10515 * 179.97438 * 15 14 12 28 28 H 1.07999 * 120.00505 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99917 * 359.97438 * 1 2 3 30 30 H 1.07992 * 120.00054 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47612 * 5.00268 * 3 2 1 32 32 H 1.09001 * 109.47122 * 245.00099 * 3 2 1 33 33 H 1.09001 * 109.47002 * 299.99404 * 4 3 2 34 34 H 1.08993 * 109.46955 * 59.99842 * 4 3 2 35 35 H 1.09001 * 109.47289 * 299.99953 * 5 4 3 36 36 H 1.09004 * 109.47261 * 59.99697 * 5 4 3 37 37 H 1.09002 * 109.47074 * 179.97438 * 8 6 5 38 38 H 1.09007 * 109.47124 * 299.99482 * 8 6 5 39 39 H 1.08997 * 109.47849 * 59.99976 * 8 6 5 40 40 H 0.97003 * 119.99788 * 24.99545 * 9 6 5 41 41 H 0.96999 * 120.00375 * 359.97438 * 14 12 10 42 42 H 1.08001 * 125.80918 * 359.97438 * 16 15 14 43 43 H 0.97003 * 120.00380 * 180.02562 * 22 21 19 44 44 H 1.08005 * 126.24334 * 359.94793 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.8004 2.6579 1.1813 6 6 4.7725 2.6856 2.3624 7 1 4.2259 2.4998 3.2871 8 6 5.4470 4.0570 2.4357 9 7 5.7916 1.6492 2.1807 10 6 6.4284 1.1351 3.2516 11 8 6.1578 1.5311 4.3664 12 6 7.4676 0.0791 3.0662 13 8 7.7386 -0.3168 1.9510 14 7 8.1047 -0.4346 4.1370 15 6 9.0808 -1.4272 3.9629 16 6 9.4894 -1.9822 2.7360 17 7 10.4179 -2.8730 2.9748 18 7 10.6322 -2.9294 4.3579 19 6 11.5258 -3.7471 5.0044 20 1 11.6114 -3.7095 6.0803 21 6 12.3211 -4.6225 4.2741 22 7 12.2174 -4.6679 2.9662 23 14 13.5374 -5.7345 5.1537 24 1 12.8747 -7.0176 5.4992 25 1 14.6975 -5.9999 4.2654 26 1 14.0070 -5.0697 6.3958 27 6 9.7960 -2.0277 4.9487 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4026 -0.9314 33 1 2.4773 1.2357 2.1130 34 1 3.7399 0.5067 1.0920 35 1 4.3583 2.7550 0.2498 36 1 3.0958 3.4847 1.2706 37 1 6.1391 4.0769 3.2775 38 1 5.9935 4.2430 1.5111 39 1 4.6887 4.8282 2.5710 40 1 6.0081 1.3328 1.2896 41 1 7.8885 -0.1181 5.0280 42 1 9.1039 -1.7166 1.7627 43 1 12.7721 -5.2790 2.4565 44 1 9.7174 -1.8277 6.0071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776067157.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:32 Heat of formation + Delta-G solvation = 16.955413 kcal Electronic energy + Delta-G solvation = -25774.192188 eV Core-core repulsion = 21921.729977 eV Total energy + Delta-G solvation = -3852.462211 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.55424 -39.58065 -38.17427 -37.14642 -35.51325 -34.34951 -33.20378 -32.30477 -30.55359 -30.30794 -28.04463 -26.69128 -25.50200 -24.15373 -22.29688 -21.26686 -20.90162 -20.35654 -20.01363 -19.46437 -18.11022 -17.46304 -16.74273 -15.83594 -15.61456 -15.52601 -15.19378 -15.17888 -14.75251 -14.38326 -14.11758 -13.81359 -13.60331 -13.43228 -13.31686 -13.02528 -12.98661 -12.51097 -12.31127 -11.98280 -11.76309 -11.73883 -11.56623 -11.29456 -11.24414 -11.18796 -10.97775 -10.88407 -10.81649 -10.55972 -10.29033 -9.61575 -9.27966 -9.23000 -9.10906 -8.87771 -8.13239 -6.78015 -6.60737 -4.28036 1.67108 2.00556 2.61860 2.93123 3.03602 3.08421 3.33533 3.71952 3.75589 3.98191 4.28344 4.37046 4.55806 4.61314 4.63215 4.86206 4.91603 4.97887 5.01167 5.07709 5.20708 5.27794 5.30023 5.47239 5.50636 5.54729 5.65836 5.72814 5.87885 5.98939 6.03676 6.19829 6.29222 6.35883 6.35985 6.49019 6.75847 6.88564 6.92311 7.16081 7.24697 7.76944 7.87221 8.11195 8.18350 8.48983 8.69504 9.30986 9.59609 10.35056 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019207 B = 0.002245 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.435076 B =12469.399448 C =13385.527489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.094 4.094 4 C -0.119 4.119 5 C -0.127 4.127 6 C 0.139 3.861 7 H 0.091 0.909 8 C -0.165 4.165 9 N -0.699 5.699 10 C 0.516 3.484 11 O -0.529 6.529 12 C 0.482 3.518 13 O -0.524 6.524 14 N -0.584 5.584 15 C -0.069 4.069 16 C -0.027 4.027 17 N -0.261 5.261 18 N -0.138 5.138 19 C -0.322 4.322 20 H 0.118 0.882 21 C 0.046 3.954 22 N -0.768 5.768 23 Si 0.936 3.064 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.263 1.263 27 C -0.077 4.077 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.412 0.588 41 H 0.409 0.591 42 H 0.178 0.822 43 H 0.276 0.724 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.599 12.752 -2.976 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.169 4.169 3 C -0.132 4.132 4 C -0.157 4.157 5 C -0.165 4.165 6 C 0.035 3.965 7 H 0.109 0.891 8 C -0.223 4.223 9 N -0.353 5.353 10 C 0.297 3.703 11 O -0.405 6.405 12 C 0.263 3.737 13 O -0.401 6.401 14 N -0.226 5.226 15 C -0.175 4.175 16 C -0.202 4.202 17 N -0.091 5.091 18 N 0.095 4.905 19 C -0.454 4.454 20 H 0.136 0.864 21 C -0.172 4.172 22 N -0.394 5.394 23 Si 0.760 3.240 24 H -0.195 1.195 25 H -0.200 1.200 26 H -0.187 1.187 27 C -0.229 4.229 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.127 0.873 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.249 0.751 41 H 0.244 0.756 42 H 0.194 0.806 43 H 0.086 0.914 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.705 11.794 -3.684 19.983 hybrid contribution -0.096 0.126 0.849 0.864 sum -15.801 11.920 -2.834 19.995 Atomic orbital electron populations 1.23838 0.95998 1.01716 1.02107 1.23030 0.96077 0.98803 0.99035 1.20783 0.98150 0.95264 0.98958 1.21585 0.97991 0.97697 0.98408 1.21929 0.97901 0.98600 0.98043 1.21080 0.88378 0.87153 0.99854 0.89086 1.22195 1.01417 0.95980 1.02747 1.45834 1.39374 1.39908 1.10173 1.20283 0.82380 0.82657 0.84934 1.90724 1.64701 1.60985 1.24121 1.19696 0.84058 0.84472 0.85444 1.90653 1.64904 1.60638 1.23915 1.42154 1.35351 1.35946 1.09173 1.17257 1.02751 1.02707 0.94801 1.24145 0.99530 0.98845 0.97726 1.78262 1.18722 1.21052 0.91097 1.44563 1.21006 1.20769 1.04188 1.19922 1.15754 1.17099 0.92619 0.86439 1.25668 0.98167 0.97752 0.95570 1.70205 1.33221 1.30602 1.05369 0.85804 0.79161 0.79773 0.79295 1.19528 1.20046 1.18740 1.21306 1.02405 1.02134 0.97040 0.88627 0.88751 0.87274 0.91611 0.90875 0.91651 0.91236 0.90971 0.90149 0.91823 0.92195 0.91491 0.75129 0.75615 0.80570 0.91356 0.83357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.46 14.32 29.01 0.42 -1.05 16 2 C -0.15 -1.19 9.52 -36.03 -0.34 -1.54 16 3 C -0.09 -0.65 5.66 -27.88 -0.16 -0.81 16 4 C -0.12 -0.90 5.08 -26.73 -0.14 -1.04 16 5 C -0.13 -0.83 4.75 -26.73 -0.13 -0.96 16 6 C 0.14 1.26 2.57 -67.94 -0.17 1.08 16 7 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 8 C -0.17 -1.39 9.48 37.16 0.35 -1.03 16 9 N -0.70 -7.96 4.52 -54.29 -0.25 -8.21 16 10 C 0.52 7.68 7.85 -11.65 -0.09 7.59 16 11 O -0.53 -8.61 16.14 5.48 0.09 -8.53 16 12 C 0.48 8.68 7.85 -11.65 -0.09 8.59 16 13 O -0.52 -10.49 13.62 5.45 0.07 -10.42 16 14 N -0.58 -11.03 5.45 -10.45 -0.06 -11.08 16 15 C -0.07 -1.60 6.90 -83.92 -0.58 -2.18 16 16 C -0.03 -0.69 10.84 -17.02 -0.18 -0.88 16 17 N -0.26 -7.48 10.39 30.81 0.32 -7.16 16 18 N -0.14 -3.77 3.73 -11.40 -0.04 -3.81 16 19 C -0.32 -8.41 10.25 -14.82 -0.15 -8.57 16 20 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 21 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 22 N -0.77 -21.17 11.81 55.50 0.66 -20.51 16 23 Si 0.94 18.70 29.55 -169.99 -5.02 13.67 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 27 C -0.08 -1.82 11.49 -16.38 -0.19 -2.01 16 28 H 0.10 0.64 8.06 -52.49 -0.42 0.22 16 29 H 0.09 0.61 7.84 -52.49 -0.41 0.19 16 30 H 0.11 0.89 8.06 -52.49 -0.42 0.46 16 31 H 0.07 0.40 7.79 -51.93 -0.40 0.00 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.62 7.75 -51.93 -0.40 0.21 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.41 4.39 8.07 -40.82 -0.33 4.06 16 41 H 0.41 6.68 8.29 -40.82 -0.34 6.34 16 42 H 0.18 4.43 5.92 -52.49 -0.31 4.12 16 43 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.15 2.93 8.06 -52.48 -0.42 2.51 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -32.15 379.16 -6.43 -38.59 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -6.36 Total: 13.46 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.55 Total: -1.72 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.63 Total: -50.77 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.16 Total: -18.94 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.15 -6.43 -38.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776067157.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.544 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds