Wall clock time and date at job start Tue Mar 31 2020 13:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46919 * 2 1 4 4 C 1.46500 * 120.00340 * 270.00036 * 3 2 1 5 5 C 1.53004 * 109.47016 * 270.00138 * 4 3 2 6 6 C 1.34775 * 119.99493 * 90.00329 * 3 2 1 7 7 O 1.21284 * 120.00288 * 0.02562 * 6 3 2 8 8 C 1.50702 * 119.99760 * 179.97438 * 6 3 2 9 9 N 1.46504 * 109.47301 * 179.97438 * 8 6 3 10 10 C 1.34775 * 120.00198 * 180.02562 * 9 8 6 11 11 O 1.21574 * 119.99963 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99888 * 180.27580 * 10 9 8 13 13 C 1.39466 * 119.99735 * 175.17880 * 12 10 9 14 14 C 1.38642 * 119.64613 * 186.28771 * 13 12 10 15 15 C 1.40820 * 118.67475 * 179.97438 * 14 13 12 16 16 C 1.41544 * 120.99811 * 179.97438 * 15 14 13 17 17 H 1.07994 * 119.99808 * 201.15377 * 16 15 14 18 18 C 1.40030 * 120.00045 * 21.14426 * 16 15 14 19 19 N 1.30743 * 119.99956 * 12.11539 * 18 16 15 20 20 Si 1.86801 * 120.00104 * 192.11144 * 18 16 15 21 21 H 1.48497 * 109.46987 * 60.00480 * 20 18 16 22 22 H 1.48502 * 109.46828 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46928 * 300.00094 * 20 18 16 24 24 C 1.41159 * 118.00310 * 0.02562 * 15 14 13 25 25 C 1.36591 * 119.12979 * 359.97438 * 24 15 14 26 26 N 1.32069 * 121.25808 * 359.74900 * 25 24 15 27 27 H 1.08994 * 109.47435 * 59.99800 * 1 2 3 28 28 H 1.08999 * 109.46884 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46885 * 299.99380 * 1 2 3 30 30 H 1.09001 * 109.47342 * 240.00396 * 2 1 3 31 31 H 1.09001 * 109.47085 * 120.00326 * 2 1 3 32 32 H 1.08997 * 109.46941 * 30.00196 * 4 3 2 33 33 H 1.09000 * 109.47016 * 150.00365 * 4 3 2 34 34 H 1.08999 * 109.46918 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.47313 * 299.99830 * 5 4 3 36 36 H 1.09000 * 109.47042 * 60.00243 * 5 4 3 37 37 H 1.08994 * 109.47085 * 60.00299 * 8 6 3 38 38 H 1.08998 * 109.47284 * 300.00177 * 8 6 3 39 39 H 0.97000 * 119.99843 * 0.02562 * 9 8 6 40 40 H 0.97000 * 120.00022 * 355.18347 * 12 10 9 41 41 H 1.08000 * 120.66368 * 0.02562 * 14 13 12 42 42 H 0.96996 * 120.00359 * 179.97438 * 19 18 16 43 43 H 1.08000 * 120.43838 * 179.97438 * 24 15 14 44 44 H 1.08002 * 119.37343 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7104 6 6 2.2429 2.0164 1.1672 7 8 2.0413 1.4445 2.2176 8 6 2.7458 3.4371 1.1673 9 7 2.9079 3.8977 2.5486 10 6 3.3494 5.1470 2.7949 11 8 3.6136 5.8916 1.8709 12 7 3.5038 5.5689 4.0656 13 6 4.0551 6.8241 4.3215 14 6 4.3319 7.1983 5.6275 15 6 4.8888 8.4702 5.8624 16 6 5.1903 8.9027 7.1760 17 1 5.2861 9.9572 7.3886 18 6 5.3640 7.9634 8.1998 19 7 5.4843 6.6943 7.9092 20 14 5.4240 8.5234 9.9809 21 1 4.1502 9.2023 10.3294 22 1 5.6152 7.3449 10.8641 23 1 6.5550 9.4680 10.1649 24 6 5.1364 9.3013 4.7485 25 6 4.8303 8.8456 3.4978 26 7 4.3137 7.6442 3.3136 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5817 1.6878 -2.0283 33 1 2.0955 3.1411 -1.1383 34 1 3.8890 2.3450 -2.6545 35 1 4.3883 2.2156 -0.9507 36 1 3.8745 0.7623 -1.8408 37 1 2.0281 4.0765 0.6534 38 1 3.7060 3.4827 0.6536 39 1 2.6975 3.3035 3.2858 40 1 3.2316 4.9994 4.8022 41 1 4.1253 6.5274 6.4482 42 1 5.6051 6.0437 8.6183 43 1 5.5622 10.2846 4.8835 44 1 5.0185 9.4780 2.6428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871723009.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:15 Heat of formation + Delta-G solvation = -22.184063 kcal Electronic energy + Delta-G solvation = -26226.679042 eV Core-core repulsion = 22372.519616 eV Total energy + Delta-G solvation = -3854.159426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.51897 -39.53928 -37.94764 -36.57425 -34.55005 -33.99367 -33.69743 -32.48407 -30.47084 -30.07198 -28.84909 -27.14658 -25.97093 -23.96974 -23.35221 -21.92281 -21.54489 -20.10588 -19.41926 -18.30502 -17.65513 -17.01106 -16.78006 -16.17352 -15.69878 -15.29234 -14.95253 -14.47728 -14.36120 -14.28177 -14.12760 -14.04205 -13.81062 -13.41034 -13.13619 -12.95022 -12.80661 -12.71267 -12.55032 -12.39012 -12.13358 -12.01003 -11.50980 -11.40270 -11.35466 -11.15519 -10.86478 -10.27957 -10.13499 -10.06023 -9.74592 -9.59232 -9.35914 -9.10911 -8.85433 -7.95079 -7.69836 -6.96000 -6.72144 -4.60157 2.30500 2.45942 2.73755 2.85143 3.02331 3.05090 3.15536 3.29122 3.85850 3.88079 4.14500 4.50544 4.63646 4.72603 4.73138 4.74016 4.96031 4.98102 5.07060 5.25736 5.28264 5.30045 5.44077 5.46695 5.58692 5.75840 5.81782 5.86033 5.98015 6.17636 6.54897 6.59796 6.67691 6.84821 6.97331 6.99799 7.20671 7.33670 7.48434 7.53663 7.81268 7.91780 8.14942 8.42284 8.50423 8.76998 8.79191 9.19209 9.78006 10.09339 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021764 B = 0.002455 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.233002 B =11404.241925 C =12367.165263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 N -0.612 5.612 4 C 0.099 3.901 5 C -0.174 4.174 6 C 0.512 3.488 7 O -0.534 6.534 8 C 0.126 3.874 9 N -0.746 5.746 10 C 0.696 3.304 11 O -0.536 6.536 12 N -0.665 5.665 13 C 0.354 3.646 14 C -0.250 4.250 15 C 0.139 3.861 16 C -0.449 4.449 17 H 0.081 0.919 18 C 0.074 3.926 19 N -0.790 5.790 20 Si 0.915 3.085 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.286 4.286 25 C 0.119 3.881 26 N -0.554 5.554 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.403 0.597 40 H 0.406 0.594 41 H 0.140 0.860 42 H 0.282 0.718 43 H 0.101 0.899 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.038 -13.444 -13.333 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.011 4.011 3 N -0.346 5.346 4 C -0.024 4.024 5 C -0.232 4.232 6 C 0.300 3.700 7 O -0.411 6.411 8 C -0.003 4.003 9 N -0.407 5.407 10 C 0.395 3.605 11 O -0.407 6.407 12 N -0.312 5.312 13 C 0.128 3.872 14 C -0.276 4.276 15 C 0.131 3.869 16 C -0.480 4.480 17 H 0.099 0.901 18 C -0.144 4.144 19 N -0.416 5.416 20 Si 0.739 3.261 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.189 1.189 24 C -0.310 4.310 25 C -0.035 4.035 26 N -0.274 5.274 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.239 0.761 40 H 0.240 0.760 41 H 0.157 0.843 42 H 0.093 0.907 43 H 0.119 0.881 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.050 -13.618 -14.439 21.063 hybrid contribution 0.081 -0.186 2.255 2.264 sum -6.969 -13.804 -12.183 19.687 Atomic orbital electron populations 1.22131 0.95758 1.02274 1.02456 1.21431 0.94454 0.81993 1.03238 1.47979 1.66144 1.14490 1.05993 1.21692 0.97293 0.98201 0.85164 1.22232 0.96393 1.02399 1.02225 1.20705 0.77116 0.88624 0.83557 1.90691 1.51837 1.67627 1.30913 1.20829 1.02808 0.91258 0.85370 1.44872 1.73817 1.14562 1.07483 1.15956 0.79098 0.81295 0.84146 1.91002 1.53690 1.53713 1.42296 1.42499 1.64688 1.17657 1.06399 1.17984 0.94497 0.84331 0.90396 1.21792 1.10530 1.01458 0.93775 1.17578 0.86364 0.90260 0.92698 1.19576 1.41700 0.94563 0.92194 0.90089 1.25987 0.92109 0.94470 1.01858 1.69726 1.34255 1.02384 1.35220 0.86251 0.79993 0.79120 0.80689 1.18757 1.20256 1.18904 1.21634 1.13291 1.02285 0.93747 1.21456 0.95293 0.91433 0.95307 1.67190 1.22053 1.04865 1.33248 0.92563 0.91560 0.92091 0.90489 0.89756 0.89935 0.89609 0.91002 0.91952 0.92293 0.88780 0.88686 0.76074 0.75975 0.84286 0.90719 0.88123 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.24 37.16 0.38 -0.77 16 2 C 0.11 0.82 6.13 -4.04 -0.02 0.80 16 3 N -0.61 -5.26 2.47 -173.68 -0.43 -5.69 16 4 C 0.10 0.60 5.93 -4.04 -0.02 0.58 16 5 C -0.17 -1.04 10.24 37.16 0.38 -0.66 16 6 C 0.51 6.04 7.74 -10.99 -0.09 5.95 16 7 O -0.53 -7.89 15.25 5.55 0.08 -7.81 16 8 C 0.13 1.58 4.71 -5.19 -0.02 1.56 16 9 N -0.75 -11.57 5.53 -66.42 -0.37 -11.93 16 10 C 0.70 14.00 8.52 -86.92 -0.74 13.26 16 11 O -0.54 -12.68 14.60 5.30 0.08 -12.60 16 12 N -0.66 -13.81 5.40 -15.86 -0.09 -13.90 16 13 C 0.35 8.85 7.42 -154.68 -1.15 7.71 16 14 C -0.25 -6.48 8.67 -38.46 -0.33 -6.81 16 15 C 0.14 3.72 5.65 -106.55 -0.60 3.12 16 16 C -0.45 -11.63 9.15 -37.65 -0.34 -11.98 16 17 H 0.08 2.00 7.88 -52.49 -0.41 1.58 16 18 C 0.07 1.80 5.31 -17.34 -0.09 1.71 16 19 N -0.79 -19.61 10.50 55.55 0.58 -19.02 16 20 Si 0.92 18.09 29.58 -169.99 -5.03 13.07 16 21 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 24 C -0.29 -7.11 9.85 -39.07 -0.38 -7.49 16 25 C 0.12 2.91 11.10 -18.04 -0.20 2.71 16 26 N -0.55 -14.51 7.86 -12.75 -0.10 -14.61 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 31 H 0.08 0.76 7.42 -51.93 -0.39 0.37 16 32 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 33 H 0.09 0.52 6.44 -51.93 -0.33 0.18 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.47 7.22 -51.93 -0.37 0.09 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 1.11 7.40 -51.93 -0.38 0.73 16 38 H 0.10 1.16 7.18 -51.93 -0.37 0.79 16 39 H 0.40 5.83 7.46 -40.82 -0.30 5.53 16 40 H 0.41 7.10 8.72 -40.82 -0.36 6.75 16 41 H 0.14 3.59 5.81 -52.49 -0.30 3.28 16 42 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 43 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 44 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 369.95 15.07 5.58 5.58 Total: -1.00 -33.55 369.95 -9.10 -42.65 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -6.16 Total: 14.59 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: -3.24 Total: 9.67 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -0.40 Total: -65.15 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: 0.16 Total: -20.40 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.55 -9.10 -42.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871723009.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.464 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds