Wall clock time and date at job start Tue Mar 31 2020 13:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46493 * 109.47460 * 2 1 4 4 C 1.46503 * 120.00259 * 269.99954 * 3 2 1 5 5 C 1.34784 * 119.99851 * 90.00232 * 3 2 1 6 6 O 1.21280 * 119.99797 * 359.97438 * 5 3 2 7 7 C 1.50700 * 119.99965 * 180.02562 * 5 3 2 8 8 H 1.08998 * 109.46951 * 59.99976 * 7 5 3 9 9 C 1.53001 * 109.46941 * 300.00050 * 7 5 3 10 10 N 1.46502 * 109.47056 * 180.02562 * 7 5 3 11 11 C 1.34777 * 119.99785 * 204.99953 * 10 7 5 12 12 O 1.21584 * 119.99863 * 0.02562 * 11 10 7 13 13 N 1.34777 * 119.99721 * 179.97438 * 11 10 7 14 14 C 1.39458 * 119.99442 * 175.06043 * 13 11 10 15 15 C 1.38643 * 119.64375 * 174.22454 * 14 13 11 16 16 C 1.40821 * 118.67573 * 179.72371 * 15 14 13 17 17 C 1.41543 * 121.00136 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00434 * 147.46924 * 17 16 15 19 19 C 1.40032 * 119.99782 * 327.46850 * 17 16 15 20 20 N 1.30749 * 119.99828 * 359.81695 * 19 17 16 21 21 Si 1.86803 * 120.00143 * 179.82043 * 19 17 16 22 22 H 1.48502 * 109.47090 * 89.99962 * 21 19 17 23 23 H 1.48497 * 109.46912 * 210.00087 * 21 19 17 24 24 H 1.48492 * 109.46935 * 329.99864 * 21 19 17 25 25 C 1.41160 * 118.00267 * 359.97438 * 16 15 14 26 26 C 1.36594 * 119.13059 * 0.02562 * 25 16 15 27 27 N 1.32061 * 121.25622 * 359.97438 * 26 25 16 28 28 H 1.09001 * 109.47836 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46983 * 299.99814 * 1 2 3 30 30 H 1.08997 * 109.47357 * 59.99535 * 1 2 3 31 31 H 1.09006 * 109.46944 * 239.99653 * 2 1 3 32 32 H 1.09006 * 109.47109 * 120.00614 * 2 1 3 33 33 H 1.09000 * 109.47147 * 270.00126 * 4 3 2 34 34 H 1.09001 * 109.46431 * 30.00166 * 4 3 2 35 35 H 1.08994 * 109.46768 * 150.00031 * 4 3 2 36 36 H 1.08993 * 109.47384 * 60.00150 * 9 7 5 37 37 H 1.09007 * 109.46728 * 180.02562 * 9 7 5 38 38 H 1.08998 * 109.47238 * 299.99750 * 9 7 5 39 39 H 0.97002 * 119.99684 * 24.99372 * 10 7 5 40 40 H 0.96998 * 119.99877 * 355.06779 * 13 11 10 41 41 H 1.08004 * 120.66276 * 359.74179 * 15 14 13 42 42 H 0.97004 * 119.99404 * 179.97438 * 20 19 17 43 43 H 1.08000 * 120.43546 * 179.97438 * 25 16 15 44 44 H 1.08000 * 119.36854 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 2.2430 2.0164 1.1673 6 8 2.0404 1.4448 2.2176 7 6 2.7449 3.4374 1.1673 8 1 2.0266 4.0764 0.6537 9 6 4.0925 3.5023 0.4457 10 7 2.9084 3.8975 2.5486 11 6 2.8505 5.2140 2.8316 12 8 2.6620 6.0196 1.9407 13 7 3.0004 5.6372 4.1024 14 6 3.0436 7.0028 4.3819 15 6 3.0769 7.4323 5.6997 16 6 3.1262 8.8156 5.9585 17 6 3.1612 9.3083 7.2850 18 1 3.6977 10.2185 7.5090 19 6 2.5002 8.6156 8.3068 20 7 1.8478 7.5157 8.0350 21 14 2.5506 9.2631 10.0583 22 1 1.4051 10.1820 10.2795 23 1 2.4635 8.1258 11.0091 24 1 3.8230 9.9962 10.2786 25 6 3.1397 9.6962 4.8554 26 6 3.1042 9.1793 3.5915 27 7 3.0583 7.8757 3.3854 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5140 0.8900 33 1 3.2920 1.9004 -1.5834 34 1 1.5817 1.6877 -2.0283 35 1 2.0956 3.1409 -1.1383 36 1 3.9713 3.1599 -0.5819 37 1 4.4557 4.5301 0.4462 38 1 4.8108 2.8633 0.9593 39 1 3.0584 3.2547 3.2593 40 1 3.0784 4.9919 4.8225 41 1 3.0656 6.7201 6.5116 42 1 1.3902 7.0357 8.7429 43 1 3.1767 10.7647 5.0086 44 1 3.1139 9.8496 2.7447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871729657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:01 Heat of formation + Delta-G solvation = -14.322228 kcal Electronic energy + Delta-G solvation = -26572.858801 eV Core-core repulsion = 22719.040290 eV Total energy + Delta-G solvation = -3853.818511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.65582 -39.53513 -38.00256 -36.21152 -35.09790 -34.11497 -33.67564 -32.00334 -30.48667 -29.97681 -28.21275 -27.23219 -25.94187 -24.96739 -23.15018 -21.90622 -21.45446 -20.05603 -19.61234 -18.37611 -17.65017 -16.90031 -16.67392 -16.09784 -15.57398 -15.21163 -14.97188 -14.66641 -14.43703 -14.15088 -14.06878 -13.89216 -13.68350 -13.33063 -13.13811 -12.83197 -12.75483 -12.54579 -12.48827 -12.38551 -12.28703 -11.85266 -11.63075 -11.39784 -11.35936 -11.14834 -10.87414 -10.26762 -10.09909 -9.95160 -9.72376 -9.59387 -9.36417 -9.06542 -8.86519 -7.85019 -7.74718 -6.97600 -6.66969 -4.59757 2.34535 2.48813 2.71208 2.84905 3.05402 3.09542 3.13632 3.26426 3.85318 3.91552 4.16942 4.55224 4.70455 4.74273 4.76681 4.83711 4.99351 5.02111 5.07884 5.13616 5.30116 5.36869 5.51032 5.58407 5.69153 5.70089 5.87556 5.95513 6.08886 6.16574 6.55255 6.59070 6.66059 6.81509 7.00370 7.01055 7.18772 7.32307 7.44313 7.52639 7.84717 7.93297 8.15244 8.41261 8.49752 8.76377 8.81664 9.17474 9.72424 10.19491 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021863 B = 0.002597 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.381148 B =10778.968754 C =11703.427055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.111 3.889 3 N -0.615 5.615 4 C 0.071 3.929 5 C 0.513 3.487 6 O -0.532 6.532 7 C 0.151 3.849 8 H 0.113 0.887 9 C -0.171 4.171 10 N -0.739 5.739 11 C 0.698 3.302 12 O -0.536 6.536 13 N -0.665 5.665 14 C 0.353 3.647 15 C -0.234 4.234 16 C 0.143 3.857 17 C -0.459 4.459 18 H 0.080 0.920 19 C 0.073 3.927 20 N -0.803 5.803 21 Si 0.917 3.083 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.277 4.277 26 C 0.116 3.884 27 N -0.549 5.549 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.401 0.599 40 H 0.406 0.594 41 H 0.134 0.866 42 H 0.280 0.720 43 H 0.102 0.898 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.820 -14.453 -13.762 19.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 N -0.350 5.350 4 C -0.072 4.072 5 C 0.301 3.699 6 O -0.408 6.408 7 C 0.041 3.959 8 H 0.131 0.869 9 C -0.230 4.230 10 N -0.398 5.398 11 C 0.397 3.603 12 O -0.408 6.408 13 N -0.313 5.313 14 C 0.126 3.874 15 C -0.260 4.260 16 C 0.134 3.866 17 C -0.491 4.491 18 H 0.099 0.901 19 C -0.144 4.144 20 N -0.430 5.430 21 Si 0.742 3.258 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.301 4.301 26 C -0.038 4.038 27 N -0.268 5.268 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.236 0.764 40 H 0.241 0.759 41 H 0.152 0.848 42 H 0.091 0.909 43 H 0.121 0.879 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.379 -14.546 -14.829 20.776 hybrid contribution -0.102 -0.107 2.314 2.319 sum 0.277 -14.653 -12.515 19.272 Atomic orbital electron populations 1.22138 0.95765 1.02286 1.02550 1.21441 0.94542 0.81913 1.03206 1.47802 1.66492 1.14477 1.06226 1.22080 1.01500 0.98384 0.85257 1.20837 0.77034 0.88570 0.83495 1.90692 1.51640 1.67563 1.30933 1.20418 0.99184 0.91682 0.84640 0.86925 1.22418 0.95721 1.04406 1.00427 1.44911 1.79770 1.06651 1.08497 1.15958 0.78713 0.81802 0.83802 1.90991 1.52748 1.52225 1.44805 1.42514 1.75225 1.06366 1.07180 1.17989 0.97028 0.82166 0.90174 1.21711 1.13655 0.97603 0.93012 1.17605 0.85699 0.90334 0.92930 1.19527 1.29428 1.08599 0.91505 0.90147 1.25922 0.93303 0.93935 1.01223 1.69727 1.24599 1.13904 1.34748 0.86169 0.79734 0.79159 0.80770 1.19470 1.20209 1.18575 1.21757 1.15324 0.99188 0.93814 1.21477 0.96683 0.90442 0.95231 1.67157 1.23365 1.02378 1.33865 0.91531 0.92069 0.92526 0.90449 0.89764 0.91735 0.90858 0.90157 0.90529 0.90221 0.92133 0.76353 0.75938 0.84836 0.90939 0.87945 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 10.24 37.15 0.38 -0.88 16 2 C 0.11 0.85 6.13 -4.05 -0.02 0.82 16 3 N -0.62 -5.46 2.87 -181.57 -0.52 -5.98 16 4 C 0.07 0.40 8.80 59.85 0.53 0.93 16 5 C 0.51 6.29 7.14 -10.98 -0.08 6.21 16 6 O -0.53 -8.16 15.42 5.56 0.09 -8.08 16 7 C 0.15 1.93 2.18 -69.08 -0.15 1.78 16 8 H 0.11 1.53 6.84 -51.93 -0.36 1.17 16 9 C -0.17 -1.81 9.12 37.16 0.34 -1.47 16 10 N -0.74 -11.40 4.96 -59.81 -0.30 -11.70 16 11 C 0.70 13.89 8.48 -86.92 -0.74 13.15 16 12 O -0.54 -12.51 14.30 5.29 0.08 -12.43 16 13 N -0.67 -13.71 5.40 -15.86 -0.09 -13.79 16 14 C 0.35 8.74 7.40 -154.68 -1.15 7.60 16 15 C -0.23 -6.04 8.60 -38.46 -0.33 -6.37 16 16 C 0.14 3.80 5.57 -106.55 -0.59 3.21 16 17 C -0.46 -11.94 9.12 -37.65 -0.34 -12.28 16 18 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 19 C 0.07 1.80 5.41 -17.34 -0.09 1.71 16 20 N -0.80 -20.35 10.69 55.55 0.59 -19.75 16 21 Si 0.92 18.46 29.56 -169.99 -5.02 13.43 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 23 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 25 C -0.28 -6.85 9.85 -39.07 -0.38 -7.23 16 26 C 0.12 2.80 11.10 -18.05 -0.20 2.60 16 27 N -0.55 -14.18 7.90 -12.76 -0.10 -14.28 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 32 H 0.08 0.77 7.42 -51.93 -0.39 0.38 16 33 H 0.06 0.28 6.95 -51.93 -0.36 -0.08 16 34 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 35 H 0.08 0.49 6.00 -51.93 -0.31 0.18 16 36 H 0.08 0.57 4.53 -51.93 -0.24 0.34 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.40 5.71 7.81 -40.82 -0.32 5.40 16 40 H 0.41 7.07 8.72 -40.82 -0.36 6.71 16 41 H 0.13 3.45 6.25 -52.48 -0.33 3.12 16 42 H 0.28 6.48 8.29 -40.82 -0.34 6.14 16 43 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 44 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 365.18 15.07 5.50 5.50 Total: -1.00 -33.80 365.18 -8.60 -42.40 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -5.99 Total: 14.91 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: -2.84 Total: 9.77 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: -0.41 Total: -65.51 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: 0.16 Total: -20.51 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.43 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.80 -8.60 -42.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871729657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.081 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds