Wall clock time and date at job start Tue Mar 31 2020 13:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47315 * 2 1 4 4 C 1.46498 * 119.99756 * 270.00207 * 3 2 1 5 5 C 1.34769 * 120.00126 * 90.00103 * 3 2 1 6 6 O 1.21283 * 119.99998 * 4.16063 * 5 3 2 7 7 C 1.50699 * 120.00156 * 184.16073 * 5 3 2 8 8 H 1.09008 * 109.47091 * 316.46324 * 7 5 3 9 9 C 1.52993 * 109.47381 * 76.46413 * 7 5 3 10 10 N 1.46502 * 109.46994 * 196.47073 * 7 5 3 11 11 C 1.34776 * 119.99759 * 155.00346 * 10 7 5 12 12 O 1.21577 * 120.00666 * 359.97438 * 11 10 7 13 13 N 1.34781 * 119.99621 * 179.97438 * 11 10 7 14 14 C 1.39463 * 119.99724 * 184.57777 * 13 11 10 15 15 C 1.38645 * 119.64607 * 185.24236 * 14 13 11 16 16 C 1.40826 * 118.67286 * 179.97438 * 15 14 13 17 17 C 1.41537 * 120.99592 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00206 * 153.01044 * 17 16 15 19 19 C 1.40030 * 120.00509 * 333.01888 * 17 16 15 20 20 N 1.30737 * 120.00731 * 173.39227 * 19 17 16 21 21 Si 1.86808 * 119.99661 * 353.38698 * 19 17 16 22 22 H 1.48502 * 109.46991 * 95.76245 * 21 19 17 23 23 H 1.48496 * 109.47121 * 215.76296 * 21 19 17 24 24 H 1.48497 * 109.47175 * 335.76469 * 21 19 17 25 25 C 1.41166 * 118.00485 * 0.02562 * 16 15 14 26 26 C 1.36595 * 119.12548 * 359.97438 * 25 16 15 27 27 N 1.32061 * 121.26142 * 359.74563 * 26 25 16 28 28 H 1.09002 * 109.46899 * 299.99946 * 1 2 3 29 29 H 1.09000 * 109.47636 * 59.99790 * 1 2 3 30 30 H 1.08996 * 109.47735 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46899 * 240.00054 * 2 1 3 32 32 H 1.09000 * 109.47636 * 120.00210 * 2 1 3 33 33 H 1.09004 * 109.47339 * 264.32746 * 4 3 2 34 34 H 1.09006 * 109.47620 * 24.33170 * 4 3 2 35 35 H 1.09004 * 109.47265 * 144.33243 * 4 3 2 36 36 H 1.08999 * 109.47758 * 176.21458 * 9 7 5 37 37 H 1.08997 * 109.47095 * 56.21525 * 9 7 5 38 38 H 1.08997 * 109.47520 * 296.21718 * 9 7 5 39 39 H 0.96999 * 120.00223 * 334.99093 * 10 7 5 40 40 H 0.96996 * 120.00176 * 4.57620 * 13 11 10 41 41 H 1.07996 * 120.66515 * 0.02562 * 15 14 13 42 42 H 0.96994 * 120.00561 * 179.97438 * 20 19 17 43 43 H 1.07992 * 120.43230 * 179.97438 * 25 16 15 44 44 H 1.08000 * 119.36514 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 2.2430 2.0165 1.1671 6 8 2.1135 1.4217 2.2161 7 6 2.6551 3.4661 1.1688 8 1 3.4092 3.6304 0.3990 9 6 1.4349 4.3436 0.8830 10 7 3.2109 3.8142 2.4789 11 6 4.0813 4.8370 2.5914 12 8 4.4057 5.4705 1.6057 13 7 4.5923 5.1575 3.7967 14 6 5.4176 6.2738 3.9297 15 6 6.0269 6.5351 5.1474 16 6 6.8565 7.6676 5.2586 17 6 7.5023 7.9811 6.4784 18 1 8.4276 8.5380 6.4720 19 6 6.9417 7.5690 7.6936 20 7 7.5995 7.7438 8.8098 21 14 5.2536 6.7693 7.7199 22 1 5.4055 5.2921 7.7144 23 1 4.5267 7.1877 8.9453 24 1 4.4867 7.1925 6.5207 25 6 7.0239 8.4813 4.1173 26 6 6.3822 8.1432 2.9598 27 7 5.6155 7.0703 2.8895 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.3165 1.9851 -1.5327 34 1 1.6534 1.6197 -2.0516 35 1 1.9991 3.1245 -1.1660 36 1 1.7186 5.3938 0.9505 37 1 0.6548 4.1303 1.6137 38 1 1.0617 4.1318 -0.1190 39 1 2.9523 3.3086 3.2653 40 1 4.3859 4.6118 4.5716 41 1 5.8690 5.8828 5.9935 42 1 7.2110 7.4587 9.6516 43 1 7.6511 9.3595 4.1588 44 1 6.5079 8.7628 2.0842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871729658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:04 Heat of formation + Delta-G solvation = -10.788463 kcal Electronic energy + Delta-G solvation = -26740.393005 eV Core-core repulsion = 22886.727729 eV Total energy + Delta-G solvation = -3853.665276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.74361 -39.75741 -38.28921 -36.28115 -35.19708 -34.24210 -33.80476 -31.99451 -31.32005 -30.34216 -28.56789 -27.18163 -25.99916 -25.10301 -23.26472 -22.44894 -21.55710 -20.14433 -19.57714 -18.65059 -17.73973 -17.01140 -16.96951 -16.06434 -15.93188 -15.62118 -15.27032 -14.89222 -14.61696 -14.32538 -14.02563 -13.97377 -13.83256 -13.47041 -13.16109 -13.07193 -12.92569 -12.89362 -12.83052 -12.48708 -12.33156 -12.12631 -11.79263 -11.54977 -11.42565 -11.03313 -10.86454 -10.57703 -10.06607 -10.02529 -9.91837 -9.61166 -9.41444 -9.11513 -9.02354 -8.20557 -7.88765 -7.20456 -7.03946 -4.74305 2.23116 2.40030 2.41723 2.64642 2.97818 3.03049 3.15093 3.23058 3.66455 3.88421 4.08072 4.35580 4.61192 4.64438 4.67772 4.77528 4.89877 4.94416 5.01007 5.08063 5.23310 5.31427 5.43269 5.44361 5.51234 5.58934 5.70803 5.78062 5.99141 6.09900 6.20492 6.33906 6.36296 6.46017 6.56734 6.92653 6.93324 7.04552 7.19540 7.29648 7.62425 7.76103 7.94127 8.17981 8.21265 8.43512 8.64997 8.95567 9.48611 9.97280 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022611 B = 0.002863 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.020575 B = 9776.536390 C =10645.282801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.109 3.891 3 N -0.615 5.615 4 C 0.067 3.933 5 C 0.515 3.485 6 O -0.534 6.534 7 C 0.149 3.851 8 H 0.111 0.889 9 C -0.160 4.160 10 N -0.739 5.739 11 C 0.699 3.301 12 O -0.529 6.529 13 N -0.670 5.670 14 C 0.387 3.613 15 C -0.315 4.315 16 C 0.126 3.874 17 C -0.430 4.430 18 H 0.095 0.905 19 C 0.081 3.919 20 N -0.805 5.805 21 Si 0.912 3.088 22 H -0.271 1.271 23 H -0.294 1.294 24 H -0.232 1.232 25 C -0.272 4.272 26 C 0.129 3.871 27 N -0.554 5.554 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.402 0.598 40 H 0.405 0.595 41 H 0.099 0.901 42 H 0.288 0.712 43 H 0.110 0.890 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.730 -13.060 -15.272 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.013 4.013 3 N -0.349 5.349 4 C -0.076 4.076 5 C 0.302 3.698 6 O -0.410 6.410 7 C 0.039 3.961 8 H 0.129 0.871 9 C -0.219 4.219 10 N -0.399 5.399 11 C 0.398 3.602 12 O -0.400 6.400 13 N -0.318 5.318 14 C 0.159 3.841 15 C -0.341 4.341 16 C 0.117 3.883 17 C -0.460 4.460 18 H 0.113 0.887 19 C -0.139 4.139 20 N -0.429 5.429 21 Si 0.740 3.260 22 H -0.198 1.198 23 H -0.222 1.222 24 H -0.156 1.156 25 C -0.295 4.295 26 C -0.022 4.022 27 N -0.273 5.273 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.238 0.762 40 H 0.239 0.761 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.128 0.872 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.858 -12.997 -16.216 24.979 hybrid contribution -0.426 -0.777 1.806 2.011 sum -14.284 -13.774 -14.410 24.524 Atomic orbital electron populations 1.22135 0.95727 1.02338 1.02396 1.21466 0.94452 0.81955 1.03424 1.47809 1.66417 1.14432 1.06250 1.22046 1.01965 0.98484 0.85104 1.20777 0.76543 0.88917 0.83542 1.90683 1.51554 1.67695 1.31079 1.20484 0.97741 0.90189 0.87645 0.87091 1.22192 0.96473 1.01397 1.01812 1.44947 1.48846 1.36274 1.09854 1.15919 0.79255 0.80732 0.84273 1.91007 1.61730 1.52061 1.35228 1.42597 1.50422 1.29018 1.09744 1.17667 0.89648 0.86371 0.90435 1.20969 1.12892 1.03902 0.96311 1.17693 0.88420 0.88558 0.93603 1.19557 1.08311 1.29714 0.88409 0.88666 1.26233 0.99987 0.92649 0.94988 1.69576 1.37879 1.35802 0.99677 0.86364 0.82354 0.79131 0.78149 1.19765 1.22248 1.15586 1.21619 1.09526 1.03094 0.95306 1.21601 0.92287 0.92194 0.96138 1.67283 1.23594 1.07276 1.29171 0.92211 0.92499 0.91480 0.90375 0.89668 0.91917 0.90495 0.90211 0.90021 0.91941 0.91125 0.76208 0.76068 0.88325 0.90163 0.87218 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.24 37.15 0.38 -0.68 16 2 C 0.11 0.79 6.13 -4.04 -0.02 0.76 16 3 N -0.61 -5.22 2.87 -181.57 -0.52 -5.74 16 4 C 0.07 0.37 9.84 59.85 0.59 0.96 16 5 C 0.51 5.96 6.94 -10.99 -0.08 5.88 16 6 O -0.53 -7.72 15.44 5.56 0.09 -7.63 16 7 C 0.15 1.79 2.14 -69.09 -0.15 1.64 16 8 H 0.11 1.37 6.76 -51.92 -0.35 1.01 16 9 C -0.16 -1.65 9.24 37.15 0.34 -1.30 16 10 N -0.74 -10.66 5.03 -59.81 -0.30 -10.97 16 11 C 0.70 12.99 8.48 -86.91 -0.74 12.26 16 12 O -0.53 -11.55 14.29 5.30 0.08 -11.48 16 13 N -0.67 -12.97 5.40 -15.86 -0.09 -13.05 16 14 C 0.39 9.02 7.41 -154.67 -1.15 7.88 16 15 C -0.31 -7.58 6.59 -38.45 -0.25 -7.84 16 16 C 0.13 3.18 5.32 -106.55 -0.57 2.61 16 17 C -0.43 -11.38 9.72 -37.65 -0.37 -11.74 16 18 H 0.10 2.62 8.06 -52.49 -0.42 2.20 16 19 C 0.08 2.09 5.51 -17.35 -0.10 1.99 16 20 N -0.80 -20.97 13.92 55.55 0.77 -20.20 16 21 Si 0.91 20.13 24.38 -169.99 -4.14 15.99 16 22 H -0.27 -5.70 6.96 56.52 0.39 -5.30 16 23 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.23 -5.27 5.83 56.52 0.33 -4.94 16 25 C -0.27 -6.34 9.85 -39.06 -0.38 -6.73 16 26 C 0.13 2.92 11.10 -18.05 -0.20 2.72 16 27 N -0.55 -13.44 7.88 -12.75 -0.10 -13.55 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 32 H 0.08 0.76 7.37 -51.93 -0.38 0.38 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.27 8.03 -51.93 -0.42 -0.15 16 35 H 0.08 0.43 4.79 -51.93 -0.25 0.18 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.53 6.10 -51.93 -0.32 0.21 16 39 H 0.40 5.36 7.74 -40.82 -0.32 5.05 16 40 H 0.40 6.53 8.71 -40.82 -0.36 6.18 16 41 H 0.10 2.28 3.65 -52.49 -0.19 2.09 16 42 H 0.29 6.78 8.29 -40.82 -0.34 6.44 16 43 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 44 H 0.13 2.49 8.06 -52.49 -0.42 2.06 16 LS Contribution 360.17 15.07 5.43 5.43 Total: -1.00 -33.32 360.17 -7.50 -40.82 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.02 Total: 11.95 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -2.69 Total: 8.43 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: -0.24 Total: -63.50 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.16 Total: -19.11 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.14 Total: 15.99 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.32 -7.50 -40.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871729658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.030 kcal (2) G-P(sol) polarization free energy of solvation -33.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds