Wall clock time and date at job start Tue Mar 31 2020 12:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.63143 * 2 1 4 4 C 1.53242 * 109.62605 * 239.61131 * 2 1 3 5 5 N 1.46892 * 109.34179 * 186.26944 * 4 2 1 6 6 C 1.46904 * 111.00381 * 187.25471 * 5 4 2 7 7 C 1.50695 * 109.47294 * 165.25646 * 6 5 4 8 8 C 1.38674 * 120.42146 * 104.27660 * 7 6 5 9 9 C 1.38625 * 118.42100 * 180.02562 * 8 7 6 10 10 C 1.38222 * 119.16540 * 0.24946 * 9 8 7 11 11 N 1.31865 * 120.75849 * 359.50402 * 10 9 8 12 12 C 1.31882 * 121.72506 * 0.48965 * 11 10 9 13 13 N 1.48014 * 119.61477 * 179.75461 * 12 11 10 14 14 O 1.21802 * 119.99966 * 191.75057 * 13 12 11 15 15 O 1.21809 * 120.00110 * 11.74642 * 13 12 11 16 16 C 1.46903 * 111.27005 * 63.10431 * 5 4 2 17 17 C 1.53241 * 109.34035 * 296.89811 * 16 5 4 18 18 H 1.08994 * 109.62732 * 173.54016 * 17 16 5 19 19 C 1.52996 * 109.78828 * 294.02685 * 17 16 5 20 20 N 1.47077 * 109.78504 * 120.49121 * 2 1 3 21 21 C 1.36938 * 120.88291 * 350.96016 * 20 2 1 22 22 H 1.07995 * 119.99648 * 27.77492 * 21 20 2 23 23 C 1.38811 * 119.99558 * 207.77329 * 21 20 2 24 24 N 1.31615 * 120.00474 * 13.38037 * 23 21 20 25 25 Si 1.86809 * 119.99471 * 193.37484 * 23 21 20 26 26 H 1.48497 * 109.46982 * 60.00370 * 25 23 21 27 27 H 1.48499 * 109.46854 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47269 * 300.00198 * 25 23 21 29 29 H 1.08993 * 109.47604 * 180.38495 * 1 2 3 30 30 H 1.09002 * 109.47030 * 300.39320 * 1 2 3 31 31 H 1.09004 * 109.46822 * 60.38274 * 1 2 3 32 32 H 1.09000 * 109.49106 * 66.30342 * 4 2 1 33 33 H 1.09005 * 109.49210 * 306.23087 * 4 2 1 34 34 H 1.09003 * 109.46678 * 45.25266 * 6 5 4 35 35 H 1.08998 * 109.46730 * 285.25728 * 6 5 4 36 36 H 1.07995 * 120.78648 * 0.04381 * 8 7 6 37 37 H 1.08002 * 120.41571 * 179.97438 * 9 8 7 38 38 H 1.07995 * 119.62194 * 179.74890 * 10 9 8 39 39 H 1.09000 * 109.48840 * 56.85639 * 16 5 4 40 40 H 1.08995 * 109.49097 * 176.93690 * 16 5 4 41 41 H 1.08996 * 109.47612 * 179.12887 * 19 17 16 42 42 H 1.09008 * 109.46886 * 299.12341 * 19 17 16 43 43 H 1.08997 * 109.47651 * 59.12247 * 19 17 16 44 44 H 0.97002 * 120.00327 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0447 -0.7302 -1.2451 5 7 3.5058 -0.8584 -1.1646 6 6 4.0567 -1.3980 -2.4150 7 6 5.5477 -1.1814 -2.4418 8 6 6.4150 -2.2374 -2.2057 9 6 7.7788 -1.9914 -2.2399 10 6 8.2258 -0.7098 -2.5011 11 7 7.3718 0.2696 -2.7257 12 6 6.0681 0.0721 -2.7014 13 7 5.1516 1.2064 -2.9548 14 8 3.9608 1.0900 -2.7266 15 8 5.5882 2.2564 -3.3915 16 6 3.9061 -1.6808 -0.0150 17 6 3.4677 -0.9896 1.2805 18 1 3.6588 -1.6467 2.1288 19 6 4.2427 0.3175 1.4581 20 7 2.0279 -0.7022 1.1926 21 6 1.1737 -1.0780 2.1947 22 1 0.1373 -1.2843 1.9718 23 6 1.6400 -1.1938 3.4970 24 7 2.8149 -0.6976 3.8220 25 14 0.5997 -2.0539 4.7885 26 1 0.3515 -3.4569 4.3702 27 1 1.3169 -2.0440 6.0888 28 1 -0.6965 -1.3439 4.9333 29 1 -0.3634 -1.0275 0.0069 30 1 -0.3633 0.5199 0.8865 31 1 -0.3633 0.5079 -0.8934 32 1 1.7779 -0.1620 -2.1362 33 1 1.5948 -1.7217 -1.2973 34 1 3.6000 -0.8878 -3.2632 35 1 3.8434 -2.4652 -2.4753 36 1 6.0369 -3.2280 -2.0005 37 1 8.4832 -2.7902 -2.0602 38 1 9.2866 -0.5090 -2.5254 39 1 3.4303 -2.6590 -0.0844 40 1 4.9893 -1.8019 -0.0141 41 1 3.9160 0.8123 2.3727 42 1 5.3092 0.1016 1.5230 43 1 4.0553 0.9699 0.6052 44 1 3.1409 -0.7789 4.7319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886266964.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:33 Heat of formation + Delta-G solvation = 89.384969 kcal Electronic energy + Delta-G solvation = -28918.917323 eV Core-core repulsion = 25069.595894 eV Total energy + Delta-G solvation = -3849.321430 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -42.08717 -40.45990 -38.52628 -36.36693 -35.17700 -33.18646 -32.62212 -32.29884 -31.00096 -28.04953 -27.27850 -26.29075 -25.98701 -24.21152 -23.23338 -22.81702 -21.68689 -20.54766 -19.35140 -18.57113 -18.42302 -17.44572 -16.82617 -16.29655 -16.12647 -15.44938 -15.17469 -14.75492 -14.26545 -14.12954 -13.92840 -13.80454 -13.50502 -13.16219 -12.99401 -12.46472 -12.10011 -11.84916 -11.51685 -11.20471 -11.17017 -11.02578 -10.90992 -10.83543 -10.70175 -10.63611 -10.45035 -10.41217 -10.37331 -10.11518 -9.97629 -9.87196 -9.74857 -9.43499 -9.19799 -8.43647 -7.79038 -6.56260 -5.71860 -3.15146 -0.19856 0.60187 1.28093 1.42615 3.13034 3.39157 3.45182 3.45663 3.84105 4.11462 4.18073 4.35175 4.50814 4.57520 4.61706 4.89428 5.21086 5.35074 5.42818 5.45953 5.53301 5.59081 5.82473 5.84865 5.96555 6.09355 6.18733 6.23665 6.35628 6.40883 6.47947 6.56728 6.67320 6.87829 7.03537 7.04446 7.07962 7.10295 7.31107 7.52628 7.55909 7.77172 7.86585 7.98082 8.00623 8.51083 9.29140 9.91110 10.49723 11.35356 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018059 B = 0.004382 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.104280 B = 6388.660586 C = 7024.153012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.172 3.828 3 H 0.037 0.963 4 C 0.059 3.941 5 N -0.510 5.510 6 C 0.084 3.916 7 C -0.044 4.044 8 C -0.069 4.069 9 C -0.127 4.127 10 C 0.111 3.889 11 N -0.436 5.436 12 C 0.189 3.811 13 N 0.026 4.974 14 O -0.093 6.093 15 O -0.164 6.164 16 C 0.037 3.963 17 C 0.201 3.799 18 H 0.097 0.903 19 C -0.132 4.132 20 N -0.585 5.585 21 C -0.245 4.245 22 H 0.070 0.930 23 C 0.001 3.999 24 N -0.903 5.903 25 Si 0.900 3.100 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.284 1.284 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.026 0.974 34 H 0.097 0.903 35 H 0.046 0.954 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.177 0.823 39 H 0.026 0.974 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.012 0.988 43 H 0.032 0.968 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.692 -5.368 -13.833 17.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.065 3.935 3 H 0.055 0.945 4 C -0.070 4.070 5 N -0.234 5.234 6 C -0.044 4.044 7 C -0.049 4.049 8 C -0.096 4.096 9 C -0.147 4.147 10 C -0.050 4.050 11 N -0.148 5.148 12 C -0.027 4.027 13 N 0.550 4.450 14 O -0.318 6.318 15 O -0.375 6.375 16 C -0.092 4.092 17 C 0.094 3.906 18 H 0.114 0.886 19 C -0.191 4.191 20 N -0.308 5.308 21 C -0.374 4.374 22 H 0.088 0.912 23 C -0.197 4.197 24 N -0.548 5.548 25 Si 0.730 3.270 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.210 1.210 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.115 0.885 35 H 0.064 0.936 36 H 0.174 0.826 37 H 0.173 0.827 38 H 0.194 0.806 39 H 0.044 0.956 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.031 0.969 43 H 0.051 0.949 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.695 -4.545 -13.659 17.355 hybrid contribution -1.007 -1.776 0.818 2.199 sum 8.687 -6.321 -12.841 16.743 Atomic orbital electron populations 1.21790 0.96073 1.01152 1.00478 1.20474 0.92166 0.94554 0.86318 0.94525 1.22625 0.85275 0.98911 1.00210 1.61877 1.12027 1.49571 0.99924 1.21205 0.87650 0.98807 0.96769 1.20657 0.99414 0.90989 0.93835 1.21708 0.92638 0.99514 0.95757 1.22545 0.96602 0.98927 0.96631 1.22783 0.99264 0.87422 0.95525 1.66473 1.01182 1.36682 1.10480 1.21355 0.88881 0.86172 1.06340 1.43253 1.01424 1.01249 0.99079 1.94635 0.97084 1.87868 1.52169 1.94547 1.81255 1.15467 1.46205 1.22980 0.98018 0.94735 0.93451 1.20358 0.83079 0.95109 0.92020 0.88559 1.21944 0.96013 0.99626 1.01548 1.44262 1.03266 1.65123 1.18156 1.19167 0.93309 1.38722 0.86230 0.91241 1.25040 0.97434 1.00418 0.96843 1.69968 1.19487 1.47205 1.18120 0.86413 0.79745 0.79654 0.81161 1.21355 1.21813 1.21044 0.93107 0.91945 0.94011 0.91144 0.95625 0.88525 0.93597 0.82640 0.82716 0.80572 0.95620 0.93118 0.90745 0.96879 0.94920 0.93824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 7.95 37.16 0.30 -2.26 16 2 C 0.17 3.57 3.25 -67.49 -0.22 3.35 16 3 H 0.04 0.84 7.63 -51.93 -0.40 0.45 16 4 C 0.06 1.03 4.57 -3.70 -0.02 1.01 16 5 N -0.51 -8.71 2.74 -235.76 -0.65 -9.35 16 6 C 0.08 1.14 4.13 -4.98 -0.02 1.12 16 7 C -0.04 -0.57 4.64 -104.48 -0.48 -1.05 16 8 C -0.07 -0.65 9.07 -39.28 -0.36 -1.00 16 9 C -0.13 -0.94 10.11 -39.44 -0.40 -1.34 16 10 C 0.11 1.02 11.18 -17.54 -0.20 0.83 16 11 N -0.44 -6.08 10.07 -10.29 -0.10 -6.18 16 12 C 0.19 2.87 7.72 -146.20 -1.13 1.74 16 13 N 0.03 0.46 4.45 32.87 0.15 0.60 16 14 O -0.09 -1.64 13.84 -29.46 -0.41 -2.05 16 15 O -0.16 -3.03 19.05 -29.46 -0.56 -3.59 16 16 C 0.04 0.69 4.86 -3.70 -0.02 0.68 16 17 C 0.20 4.64 2.34 -67.49 -0.16 4.48 16 18 H 0.10 2.52 6.09 -51.93 -0.32 2.20 16 19 C -0.13 -3.10 8.95 37.16 0.33 -2.77 16 20 N -0.58 -14.04 2.73 -157.01 -0.43 -14.47 16 21 C -0.24 -6.40 8.72 -15.06 -0.13 -6.53 16 22 H 0.07 1.78 6.20 -52.49 -0.33 1.46 16 23 C 0.00 0.01 5.02 -17.43 -0.09 -0.07 16 24 N -0.90 -25.18 9.60 55.49 0.53 -24.64 16 25 Si 0.90 21.32 29.58 -169.99 -5.03 16.29 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 H 0.05 0.94 7.54 -51.93 -0.39 0.55 16 30 H 0.06 1.26 7.60 -51.93 -0.39 0.86 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.13 7.52 -51.93 -0.39 0.73 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 1.29 6.36 -51.93 -0.33 0.96 16 35 H 0.05 0.54 7.93 -51.93 -0.41 0.13 16 36 H 0.16 1.08 8.05 -52.49 -0.42 0.66 16 37 H 0.16 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.18 0.97 8.06 -52.49 -0.42 0.54 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.87 6.67 -51.93 -0.35 0.53 16 41 H 0.07 1.98 6.88 -51.93 -0.36 1.62 16 42 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 43 H 0.03 0.77 7.10 -51.93 -0.37 0.40 16 44 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 348.46 15.07 5.25 5.25 Total: -1.00 -31.33 348.46 -9.95 -41.28 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.12 Total: -1.32 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -2.59 Total: -1.82 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.50 Total: -54.04 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.97 Total: -5.64 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.33 -9.95 -41.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886266964.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.666 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds