Wall clock time and date at job start Tue Mar 31 2020 13:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21305 * 119.99734 * 2 1 4 4 C 1.46773 * 119.99973 * 180.02562 * 2 1 3 5 5 C 1.37981 * 125.91444 * 180.25992 * 4 2 1 6 6 N 1.34709 * 106.65094 * 180.18002 * 5 4 2 7 7 C 1.46499 * 126.52346 * 179.88450 * 6 5 4 8 8 C 1.53504 * 114.20382 * 84.71357 * 7 6 5 9 9 N 1.47066 * 88.04678 * 220.37387 * 8 7 6 10 10 C 1.34779 * 136.05571 * 207.12426 * 9 8 7 11 11 O 1.21283 * 120.00229 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99936 * 180.02562 * 10 9 8 13 13 C 1.53000 * 109.47256 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47111 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.46867 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47199 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00031 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00088 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00052 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99876 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47335 * 59.99937 * 20 18 16 22 22 H 1.48494 * 109.47271 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46878 * 299.99667 * 20 18 16 24 24 C 1.47064 * 87.88659 * 27.09306 * 9 8 7 25 25 N 1.40161 * 106.95408 * 359.62742 * 6 5 4 26 26 N 1.28712 * 108.67865 * 0.23604 * 25 6 5 27 27 H 1.09000 * 109.47219 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47015 * 299.99950 * 1 2 3 29 29 H 1.09000 * 109.47344 * 60.00292 * 1 2 3 30 30 H 1.08006 * 126.67694 * 0.04934 * 5 4 2 31 31 H 1.09002 * 113.41645 * 217.91177 * 7 6 5 32 32 H 1.09002 * 113.46865 * 105.56483 * 8 7 6 33 33 H 1.08999 * 113.46581 * 335.18259 * 8 7 6 34 34 H 1.09005 * 109.46761 * 299.99821 * 12 10 9 35 35 H 1.08999 * 109.47513 * 59.99746 * 12 10 9 36 36 H 1.09000 * 109.46682 * 299.99812 * 13 12 10 37 37 H 1.08999 * 109.47050 * 59.99483 * 13 12 10 38 38 H 1.08991 * 109.47437 * 299.99939 * 14 13 12 39 39 H 1.08999 * 109.47137 * 60.00086 * 14 13 12 40 40 H 1.08996 * 109.47709 * 300.00147 * 15 14 13 41 41 H 1.09008 * 109.46953 * 60.00061 * 15 14 13 42 42 H 0.97005 * 119.99696 * 180.02562 * 19 18 16 43 43 H 1.08999 * 113.47096 * 87.65665 * 24 9 8 44 44 H 1.09005 * 113.46966 * 218.04058 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2409 -1.2711 -0.0006 5 6 3.6133 -1.4133 0.0044 6 7 3.8643 -2.7368 -0.0022 7 6 5.1834 -3.3741 -0.0027 8 6 5.8030 -3.5393 1.3920 9 7 7.0977 -3.1597 0.8066 10 6 8.3949 -3.4013 1.0809 11 8 8.6952 -4.0965 2.0283 12 6 9.4724 -2.8077 0.2104 13 6 10.8448 -3.2330 0.7363 14 6 11.9387 -2.6308 -0.1479 15 6 13.3111 -3.0556 0.3783 16 6 14.3886 -2.4620 -0.4921 17 1 14.1213 -1.8432 -1.3360 18 6 15.7157 -2.7087 -0.2112 19 7 16.0413 -3.4617 0.8167 20 14 17.0513 -1.9723 -1.2898 21 1 16.9484 -0.4911 -1.2632 22 1 18.3833 -2.3856 -0.7799 23 1 16.8839 -2.4553 -2.6841 24 6 6.3538 -2.4010 -0.2102 25 7 2.6232 -3.3881 -0.0026 26 7 1.6916 -2.5000 -0.0015 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 4.3443 -0.6182 0.0102 31 1 5.2316 -4.2697 -0.6221 32 1 5.7770 -4.5651 1.7598 33 1 5.4289 -2.8207 2.1211 34 1 9.3491 -3.1623 -0.8129 35 1 9.3973 -1.7205 0.2298 36 1 10.9677 -2.8780 1.7595 37 1 10.9202 -4.3202 0.7173 38 1 11.8156 -2.9860 -1.1709 39 1 11.8634 -1.5436 -0.1293 40 1 13.4341 -2.7000 1.4013 41 1 13.3867 -4.1429 0.3601 42 1 16.9750 -3.6350 1.0145 43 1 6.1259 -1.3787 0.0914 44 1 6.7967 -2.4581 -1.2046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889545308.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:40 Heat of formation + Delta-G solvation = 50.158810 kcal Electronic energy + Delta-G solvation = -25051.160998 eV Core-core repulsion = 21200.138594 eV Total energy + Delta-G solvation = -3851.022404 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.85839 -40.92277 -39.46196 -38.51611 -35.00911 -34.35892 -32.70204 -31.89116 -30.76119 -30.05090 -28.98873 -27.02235 -25.78590 -24.54814 -23.94890 -22.37416 -21.48084 -20.55048 -20.09531 -19.37209 -18.29567 -17.35577 -16.75262 -16.47111 -16.21766 -15.95430 -15.93040 -15.59082 -15.27856 -15.05404 -14.47527 -14.39956 -14.16823 -13.69957 -13.53489 -13.25049 -12.77650 -12.69676 -12.64866 -12.61127 -12.31375 -12.11134 -11.82694 -11.77674 -11.67236 -11.02941 -10.91555 -10.62516 -10.59265 -10.49363 -10.46718 -10.13160 -9.84442 -9.69047 -9.36676 -9.29500 -9.05209 -8.34173 -5.98926 -4.01885 0.39517 0.90381 1.20404 2.20667 2.42095 2.48297 2.98429 3.32473 3.37256 3.39068 3.39280 3.62417 3.71163 3.98164 4.13270 4.26153 4.45734 4.53296 4.59067 4.60407 4.67169 4.86588 4.94520 4.98555 5.04765 5.08743 5.19964 5.21819 5.24464 5.36421 5.57656 5.67453 5.71757 6.01522 6.17708 6.43200 6.73361 6.87987 6.90333 7.10330 7.15242 7.42310 7.68811 7.83960 7.84991 8.01533 8.43016 9.05419 9.61996 11.12247 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025874 B = 0.001709 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.928300 B =16382.816858 C =17105.337071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.445 3.555 3 O -0.460 6.460 4 C -0.136 4.136 5 C 0.094 3.906 6 N -0.346 5.346 7 C 0.108 3.892 8 C 0.098 3.902 9 N -0.650 5.650 10 C 0.550 3.450 11 O -0.517 6.517 12 C -0.130 4.130 13 C -0.105 4.105 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.523 4.523 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.097 3.903 25 N -0.056 5.056 26 N -0.190 5.190 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.206 0.794 31 H 0.155 0.845 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.261 0.739 43 H 0.097 0.903 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.069 4.320 -3.267 32.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.321 3.679 3 O -0.333 6.333 4 C -0.273 4.273 5 C -0.063 4.063 6 N -0.129 5.129 7 C 0.004 3.996 8 C -0.026 4.026 9 N -0.389 5.389 10 C 0.342 3.658 11 O -0.391 6.391 12 C -0.170 4.170 13 C -0.143 4.143 14 C -0.147 4.147 15 C -0.017 4.017 16 C -0.561 4.561 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.028 4.028 25 N -0.036 5.036 26 N -0.064 5.064 27 H 0.110 0.890 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.222 0.778 31 H 0.172 0.828 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.115 0.885 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -31.803 2.985 -2.584 32.047 hybrid contribution 1.367 1.188 -0.537 1.889 sum -30.435 4.173 -3.121 30.878 Atomic orbital electron populations 1.22107 0.92262 1.05721 1.04857 1.21354 0.91717 0.84696 0.70178 1.90606 1.72254 1.33019 1.37378 1.22489 0.91258 0.95082 1.18481 1.23958 0.98239 0.87475 0.96634 1.50352 1.08633 1.05262 1.48684 1.23715 0.75634 0.99116 1.01091 1.23315 0.81155 1.03955 0.94219 1.49446 1.04212 1.52833 1.32412 1.20877 0.79941 0.79839 0.85175 1.90765 1.80350 1.38007 1.29938 1.21798 0.93892 1.01929 0.99384 1.21509 0.90781 1.01636 1.00412 1.21647 0.96162 0.99127 0.97804 1.19093 0.89457 0.96753 0.96420 1.21232 0.91162 1.30916 1.12814 0.92794 1.25036 0.98833 0.95299 0.95325 1.69961 1.17702 1.37980 1.27724 0.86666 0.81035 0.79547 0.80773 1.20280 1.21285 1.20284 1.23387 0.87678 0.96148 0.95635 1.82074 0.83044 1.16441 1.22064 1.74684 1.24138 0.98631 1.08994 0.89012 0.88552 0.88537 0.77781 0.82766 0.88314 0.89049 0.88825 0.88867 0.91649 0.91601 0.93382 0.93399 0.96565 0.96554 0.92953 0.88530 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.84 10.32 36.01 0.37 -0.47 16 2 C 0.44 3.15 7.24 -30.86 -0.22 2.92 16 3 O -0.46 -4.41 17.62 5.54 0.10 -4.31 16 4 C -0.14 -1.00 6.96 -83.29 -0.58 -1.58 16 5 C 0.09 0.53 10.56 -16.38 -0.17 0.35 16 6 N -0.35 -2.07 3.84 -53.93 -0.21 -2.28 16 7 C 0.11 0.47 5.44 -67.70 -0.37 0.10 16 8 C 0.10 0.62 8.42 -8.50 -0.07 0.55 16 9 N -0.65 -5.30 3.69 -185.02 -0.68 -5.98 16 10 C 0.55 6.84 8.08 -10.98 -0.09 6.75 16 11 O -0.52 -8.84 16.76 5.56 0.09 -8.75 16 12 C -0.13 -1.53 5.53 -27.88 -0.15 -1.68 16 13 C -0.11 -1.76 4.50 -26.73 -0.12 -1.88 16 14 C -0.11 -2.15 5.15 -26.73 -0.14 -2.29 16 15 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 16 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -27.14 13.29 55.43 0.74 -26.41 16 20 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.10 0.38 7.78 -8.44 -0.07 0.31 16 25 N -0.06 -0.49 13.76 60.35 0.83 0.34 16 26 N -0.19 -1.66 11.73 32.97 0.39 -1.27 16 27 H 0.09 0.39 7.44 -51.93 -0.39 0.00 16 28 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.21 0.56 6.82 -52.48 -0.36 0.21 16 31 H 0.15 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.18 8.10 -51.93 -0.42 0.75 16 37 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.10 0.22 6.44 -51.93 -0.33 -0.11 16 44 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 381.71 15.07 5.75 5.75 Total: -1.00 -36.67 381.71 -6.71 -43.38 By element: Atomic # 1 Polarization: -0.39 SS G_CDS: -6.53 Total: -6.92 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -2.16 Total: -10.14 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 1.06 Total: -35.61 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.19 Total: -13.06 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.67 -6.71 -43.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889545308.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.541 kcal (2) G-P(sol) polarization free energy of solvation -36.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds