Wall clock time and date at job start Tue Mar 31 2020 13:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32992 * 1 3 3 C 1.47098 * 119.99938 * 2 1 4 4 O 1.21618 * 119.99977 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00252 * 180.02562 * 3 2 1 6 6 C 1.46500 * 119.99732 * 359.97438 * 5 3 2 7 7 C 1.53007 * 109.46768 * 269.99929 * 6 5 3 8 8 C 1.46502 * 119.99908 * 180.02562 * 5 3 2 9 9 C 1.50704 * 109.46564 * 269.99427 * 8 5 3 10 10 O 1.21291 * 120.00259 * 0.02562 * 9 8 5 11 11 N 1.34779 * 119.99258 * 180.02562 * 9 8 5 12 12 C 1.40162 * 119.99437 * 180.02562 * 11 9 8 13 13 C 1.40415 * 125.97631 * 0.31570 * 12 11 9 14 14 C 1.35232 * 107.86655 * 180.13084 * 13 12 11 15 15 C 1.50703 * 126.06766 * 179.84998 * 14 13 12 16 16 N 1.34968 * 107.86163 * 359.58679 * 14 13 12 17 17 C 1.46509 * 125.97450 * 180.23081 * 16 14 13 18 18 C 1.50698 * 109.47025 * 89.99735 * 17 16 14 19 19 H 1.08000 * 120.00464 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99358 * 179.97438 * 18 17 16 21 21 N 1.31506 * 120.00418 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99496 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47105 * 90.00179 * 22 20 18 24 24 H 1.48499 * 109.46684 * 210.00001 * 22 20 18 25 25 H 1.48503 * 109.47226 * 329.99788 * 22 20 18 26 26 N 1.31221 * 125.97269 * 179.97438 * 12 11 9 27 27 H 1.07997 * 120.00177 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00275 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00177 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47079 * 29.99815 * 6 5 3 31 31 H 1.08995 * 109.47208 * 150.00401 * 6 5 3 32 32 H 1.09000 * 109.47206 * 300.00348 * 7 6 5 33 33 H 1.09001 * 109.47214 * 60.00522 * 7 6 5 34 34 H 1.09001 * 109.46928 * 179.97438 * 7 6 5 35 35 H 1.08995 * 109.46592 * 149.99889 * 8 5 3 36 36 H 1.08990 * 109.47210 * 29.99651 * 8 5 3 37 37 H 0.96991 * 120.00480 * 0.02562 * 11 9 8 38 38 H 1.07995 * 126.06342 * 0.02562 * 13 12 11 39 39 H 1.09002 * 109.47152 * 269.68932 * 15 14 13 40 40 H 1.09001 * 109.46980 * 149.69032 * 15 14 13 41 41 H 1.09004 * 109.47113 * 29.69013 * 15 14 13 42 42 H 1.08994 * 109.46750 * 210.00045 * 17 16 14 43 43 H 1.09004 * 109.46474 * 329.99737 * 17 16 14 44 44 H 0.96998 * 120.00265 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2739 0.0000 4 8 1.4573 2.3271 -0.0005 5 7 3.4132 1.2740 -0.0005 6 6 4.1457 0.0053 -0.0005 7 6 4.4012 -0.4360 1.4421 8 6 4.1456 2.5428 0.0000 9 6 4.3962 2.9786 -1.4207 10 8 4.0015 2.2968 -2.3428 11 7 5.0591 4.1261 -1.6664 12 6 5.2917 4.5318 -2.9877 13 6 4.8869 3.8464 -4.1444 14 6 5.3032 4.5588 -5.2159 15 6 5.0892 4.1929 -6.6621 16 7 5.9393 5.6584 -4.7601 17 6 6.5442 6.7069 -5.5855 18 6 5.5214 7.7773 -5.8669 19 1 4.5210 7.6860 -5.4704 20 6 5.8633 8.8737 -6.6299 21 7 7.0815 8.9851 -7.1124 22 14 4.5957 10.2009 -6.9783 23 1 4.6557 11.2343 -5.9136 24 1 4.8839 10.8276 -8.2933 25 1 3.2398 9.5957 -7.0049 26 7 5.9206 5.6217 -3.3600 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8699 -0.9353 0.0004 30 1 3.5564 -0.7545 -0.5139 31 1 5.0979 0.1355 -0.5147 32 1 4.9904 0.3238 1.9555 33 1 3.4490 -0.5663 1.9563 34 1 4.9458 -1.3802 1.4421 35 1 5.0981 2.4121 0.5134 36 1 3.5567 3.3020 0.5145 37 1 5.3751 4.6712 -0.9290 38 1 4.3414 2.9148 -4.1732 39 1 5.9274 3.5907 -7.0124 40 1 5.0195 5.1015 -7.2602 41 1 4.1657 3.6220 -6.7596 42 1 7.3906 7.1435 -5.0554 43 1 6.8875 6.2760 -6.5260 44 1 7.3219 9.7562 -7.6495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901284198.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:17 Heat of formation + Delta-G solvation = 36.041275 kcal Electronic energy + Delta-G solvation = -26407.518067 eV Core-core repulsion = 22555.883481 eV Total energy + Delta-G solvation = -3851.634586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.85426 -40.26827 -38.89901 -36.23456 -34.78590 -33.41490 -33.26712 -31.61818 -31.19404 -30.76831 -28.47193 -26.54051 -26.30566 -24.16656 -23.41713 -22.62876 -21.23015 -19.79433 -19.34117 -18.73874 -17.90921 -16.99804 -16.70150 -16.59686 -15.91886 -15.31990 -15.23283 -15.03602 -14.54347 -14.28857 -14.17470 -14.07014 -13.78696 -13.64784 -13.01156 -12.95746 -12.60140 -12.47528 -12.39060 -12.29714 -12.02835 -11.88352 -11.66164 -11.48805 -11.40283 -11.06988 -10.83240 -10.42917 -10.24468 -10.12201 -10.09365 -10.01795 -9.72565 -9.51631 -8.92827 -8.63770 -7.92563 -7.44481 -6.25010 -4.32637 1.14222 2.32543 2.42759 2.88807 2.96920 3.16461 3.22856 3.28932 3.34557 3.72341 3.89840 4.25397 4.31352 4.51248 4.65122 4.76960 4.81558 4.89133 5.04873 5.08630 5.11251 5.31382 5.33680 5.40715 5.45628 5.72682 5.76527 5.91514 5.95278 5.97202 6.10086 6.14526 6.26167 6.48200 6.57403 6.74092 6.93729 7.05472 7.06999 7.46045 7.65057 7.68314 7.89538 7.94432 8.06328 8.26334 8.66295 8.76229 9.33887 10.82200 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021524 B = 0.002528 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.575134 B =11074.680976 C =11423.245736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.212 4.212 3 C 0.551 3.449 4 O -0.538 6.538 5 N -0.592 5.592 6 C 0.106 3.894 7 C -0.173 4.173 8 C 0.102 3.898 9 C 0.501 3.499 10 O -0.507 6.507 11 N -0.630 5.630 12 C 0.264 3.736 13 C -0.289 4.289 14 C 0.091 3.909 15 C -0.088 4.088 16 N -0.317 5.317 17 C 0.259 3.741 18 C -0.536 4.536 19 H 0.064 0.936 20 C 0.066 3.934 21 N -0.892 5.892 22 Si 0.906 3.094 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.272 1.272 26 N -0.320 5.320 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.129 0.871 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.410 0.590 38 H 0.157 0.843 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.383 -20.856 15.439 26.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.233 4.233 3 C 0.342 3.658 4 O -0.416 6.416 5 N -0.324 5.324 6 C -0.017 4.017 7 C -0.231 4.231 8 C -0.025 4.025 9 C 0.285 3.715 10 O -0.380 6.380 11 N -0.279 5.279 12 C 0.011 3.989 13 C -0.320 4.320 14 C -0.040 4.040 15 C -0.147 4.147 16 N -0.099 5.099 17 C 0.141 3.859 18 C -0.575 4.575 19 H 0.083 0.917 20 C -0.138 4.138 21 N -0.530 5.530 22 Si 0.733 3.267 23 H -0.203 1.203 24 H -0.209 1.209 25 H -0.196 1.196 26 N -0.151 5.151 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.147 0.853 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.245 0.755 38 H 0.175 0.825 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.203 -19.558 14.998 25.189 hybrid contribution -0.632 0.454 -0.113 0.786 sum -5.835 -19.104 14.885 24.911 Atomic orbital electron populations 1.24770 0.95378 1.03362 0.89722 1.22800 0.96301 0.96941 1.07262 1.18706 0.81587 0.90073 0.75461 1.90811 1.67758 1.33402 1.49594 1.47385 1.05579 1.05968 1.73460 1.21648 0.97779 0.84994 0.97251 1.22255 1.02391 1.01823 0.96618 1.21208 0.99287 0.88405 0.93609 1.21166 0.77600 0.80338 0.92356 1.90645 1.48655 1.53320 1.45368 1.42455 1.56424 1.23709 1.05286 1.18995 1.00453 0.94539 0.84894 1.21223 1.15850 1.06245 0.88701 1.21058 0.97091 0.89076 0.96796 1.20376 1.02011 1.02693 0.89596 1.48996 1.41279 1.17542 1.02132 1.19686 0.94395 0.83418 0.88386 1.21335 0.97933 1.05009 1.33211 0.91741 1.24926 0.95804 0.97946 0.95085 1.69915 1.18229 1.30266 1.34578 0.86357 0.81342 0.81299 0.77717 1.20322 1.20865 1.19625 1.77249 1.26700 1.18858 0.92290 0.86782 0.86652 0.85300 0.89684 0.89922 0.92133 0.92186 0.91195 0.87043 0.86448 0.75469 0.82520 0.91101 0.89886 0.90669 0.93007 0.92805 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 14.31 28.91 0.41 -0.30 16 2 C -0.21 -1.84 9.21 -37.81 -0.35 -2.19 16 3 C 0.55 6.75 7.62 -12.67 -0.10 6.66 16 4 O -0.54 -8.75 15.80 5.26 0.08 -8.66 16 5 N -0.59 -6.00 1.96 -176.46 -0.35 -6.34 16 6 C 0.11 0.72 5.84 -4.04 -0.02 0.70 16 7 C -0.17 -0.81 10.24 37.16 0.38 -0.43 16 8 C 0.10 1.02 5.89 -5.19 -0.03 0.99 16 9 C 0.50 7.36 7.87 -10.98 -0.09 7.27 16 10 O -0.51 -9.19 13.56 5.55 0.08 -9.12 16 11 N -0.63 -9.88 5.45 -11.13 -0.06 -9.94 16 12 C 0.26 5.49 8.11 -154.38 -1.25 4.24 16 13 C -0.29 -6.14 9.52 -39.83 -0.38 -6.52 16 14 C 0.09 1.97 6.92 -82.28 -0.57 1.41 16 15 C -0.09 -1.56 9.89 36.01 0.36 -1.20 16 16 N -0.32 -7.67 3.59 -58.32 -0.21 -7.88 16 17 C 0.26 6.72 5.81 -5.19 -0.03 6.69 16 18 C -0.54 -15.00 9.39 -34.44 -0.32 -15.32 16 19 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 20 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 21 N -0.89 -25.24 13.29 55.43 0.74 -24.51 16 22 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 N -0.32 -7.53 12.59 31.44 0.40 -7.13 16 27 H 0.11 1.04 7.49 -52.49 -0.39 0.65 16 28 H 0.12 0.51 8.06 -52.49 -0.42 0.08 16 29 H 0.13 0.74 6.22 -52.49 -0.33 0.41 16 30 H 0.08 0.51 6.09 -51.93 -0.32 0.19 16 31 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.11 0.67 8.07 -51.93 -0.42 0.25 16 36 H 0.12 1.17 7.42 -51.93 -0.39 0.78 16 37 H 0.41 5.03 8.82 -40.82 -0.36 4.67 16 38 H 0.16 3.27 5.92 -52.49 -0.31 2.96 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 1.56 7.71 -51.93 -0.40 1.16 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.05 1.43 8.14 -51.93 -0.42 1.00 16 43 H 0.05 1.38 7.65 -51.93 -0.40 0.98 16 44 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 379.68 15.07 5.72 5.72 Total: -1.00 -36.56 379.68 -6.94 -43.50 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.23 Total: 4.26 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -2.09 Total: 3.72 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.52 Total: -55.81 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: 0.16 Total: -17.78 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.56 -6.94 -43.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901284198.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.542 kcal (2) G-P(sol) polarization free energy of solvation -36.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds