Wall clock time and date at job start Tue Mar 31 2020 13:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32992 * 1 3 3 C 1.47098 * 119.99938 * 2 1 4 4 O 1.21618 * 119.99977 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00252 * 180.02562 * 3 2 1 6 6 C 1.46500 * 119.99732 * 359.97438 * 5 3 2 7 7 C 1.53007 * 109.46768 * 269.99929 * 6 5 3 8 8 C 1.46502 * 119.99908 * 180.02562 * 5 3 2 9 9 C 1.50704 * 109.46564 * 269.99427 * 8 5 3 10 10 O 1.21291 * 120.00259 * 0.02562 * 9 8 5 11 11 N 1.34779 * 119.99258 * 180.02562 * 9 8 5 12 12 C 1.40162 * 119.99437 * 180.02562 * 11 9 8 13 13 C 1.40415 * 125.97631 * 0.31570 * 12 11 9 14 14 C 1.35232 * 107.86655 * 180.13084 * 13 12 11 15 15 C 1.50703 * 126.06766 * 179.84998 * 14 13 12 16 16 N 1.34968 * 107.86163 * 359.58679 * 14 13 12 17 17 C 1.46509 * 125.97450 * 180.23081 * 16 14 13 18 18 C 1.50698 * 109.47025 * 89.99735 * 17 16 14 19 19 H 1.08000 * 120.00464 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99358 * 179.97438 * 18 17 16 21 21 N 1.31506 * 120.00418 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99496 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47105 * 90.00179 * 22 20 18 24 24 H 1.48499 * 109.46684 * 210.00001 * 22 20 18 25 25 H 1.48503 * 109.47226 * 329.99788 * 22 20 18 26 26 N 1.31221 * 125.97269 * 179.97438 * 12 11 9 27 27 H 1.07997 * 120.00177 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00275 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00177 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47079 * 29.99815 * 6 5 3 31 31 H 1.08995 * 109.47208 * 150.00401 * 6 5 3 32 32 H 1.09000 * 109.47206 * 300.00348 * 7 6 5 33 33 H 1.09001 * 109.47214 * 60.00522 * 7 6 5 34 34 H 1.09001 * 109.46928 * 179.97438 * 7 6 5 35 35 H 1.08995 * 109.46592 * 149.99889 * 8 5 3 36 36 H 1.08990 * 109.47210 * 29.99651 * 8 5 3 37 37 H 0.96991 * 120.00480 * 0.02562 * 11 9 8 38 38 H 1.07995 * 126.06342 * 0.02562 * 13 12 11 39 39 H 1.09002 * 109.47152 * 269.68932 * 15 14 13 40 40 H 1.09001 * 109.46980 * 149.69032 * 15 14 13 41 41 H 1.09004 * 109.47113 * 29.69013 * 15 14 13 42 42 H 1.08994 * 109.46750 * 210.00045 * 17 16 14 43 43 H 1.09004 * 109.46474 * 329.99737 * 17 16 14 44 44 H 0.96998 * 120.00265 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2739 0.0000 4 8 1.4573 2.3271 -0.0005 5 7 3.4132 1.2740 -0.0005 6 6 4.1457 0.0053 -0.0005 7 6 4.4012 -0.4360 1.4421 8 6 4.1456 2.5428 0.0000 9 6 4.3962 2.9786 -1.4207 10 8 4.0015 2.2968 -2.3428 11 7 5.0591 4.1261 -1.6664 12 6 5.2917 4.5318 -2.9877 13 6 4.8869 3.8464 -4.1444 14 6 5.3032 4.5588 -5.2159 15 6 5.0892 4.1929 -6.6621 16 7 5.9393 5.6584 -4.7601 17 6 6.5442 6.7069 -5.5855 18 6 5.5214 7.7773 -5.8669 19 1 4.5210 7.6860 -5.4704 20 6 5.8633 8.8737 -6.6299 21 7 7.0815 8.9851 -7.1124 22 14 4.5957 10.2009 -6.9783 23 1 4.6557 11.2343 -5.9136 24 1 4.8839 10.8276 -8.2933 25 1 3.2398 9.5957 -7.0049 26 7 5.9206 5.6217 -3.3600 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8699 -0.9353 0.0004 30 1 3.5564 -0.7545 -0.5139 31 1 5.0979 0.1355 -0.5147 32 1 4.9904 0.3238 1.9555 33 1 3.4490 -0.5663 1.9563 34 1 4.9458 -1.3802 1.4421 35 1 5.0981 2.4121 0.5134 36 1 3.5567 3.3020 0.5145 37 1 5.3751 4.6712 -0.9290 38 1 4.3414 2.9148 -4.1732 39 1 5.9274 3.5907 -7.0124 40 1 5.0195 5.1015 -7.2602 41 1 4.1657 3.6220 -6.7596 42 1 7.3906 7.1435 -5.0554 43 1 6.8875 6.2760 -6.5260 44 1 7.3219 9.7562 -7.6495 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901284198.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:16 Heat of formation + Delta-G solvation = 11.742480 kcal Electronic energy + Delta-G solvation = -26408.571741 eV Core-core repulsion = 22555.883481 eV Total energy + Delta-G solvation = -3852.688261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.35565 -41.37804 -40.12151 -37.08378 -36.29773 -35.32839 -33.99431 -33.13747 -32.69085 -31.80277 -29.51188 -28.31715 -27.90063 -25.23570 -24.66407 -23.75889 -22.40957 -21.31459 -20.82049 -19.56059 -18.83189 -18.67684 -18.15376 -17.78148 -17.34800 -16.79983 -16.60943 -16.23708 -15.97784 -15.71321 -15.25827 -14.91855 -14.72264 -14.63009 -14.41269 -14.31810 -13.85011 -13.73719 -13.62073 -13.51530 -13.22746 -13.08251 -12.94979 -12.84534 -12.71623 -12.44325 -12.27882 -12.11230 -11.98757 -11.59898 -11.37165 -11.13186 -10.99484 -10.75974 -10.74991 -9.80727 -9.61606 -9.17435 -8.35264 -6.52925 0.43947 0.87433 1.24221 1.35588 1.36620 1.39530 1.48936 1.91461 2.16099 2.25428 2.32444 2.48774 2.94348 3.52931 3.60512 3.88101 4.02718 4.12303 4.15462 4.24490 4.30571 4.43330 4.44222 4.63658 4.72649 4.74957 4.76600 4.84364 4.88037 4.94810 4.98556 5.01783 5.10457 5.21730 5.31710 5.35356 5.43933 5.51203 5.52701 5.78640 5.90769 6.22945 6.24141 6.30972 6.59406 6.93793 7.07785 7.11115 7.18125 8.70754 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021524 B = 0.002528 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.575134 B =11074.680976 C =11423.245736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.227 4.227 3 C 0.537 3.463 4 O -0.592 6.592 5 N -0.591 5.591 6 C 0.100 3.900 7 C -0.164 4.164 8 C 0.108 3.892 9 C 0.501 3.499 10 O -0.542 6.542 11 N -0.623 5.623 12 C 0.272 3.728 13 C -0.300 4.300 14 C 0.087 3.913 15 C -0.085 4.085 16 N -0.343 5.343 17 C 0.276 3.724 18 C -0.555 4.555 19 H 0.046 0.954 20 C 0.025 3.975 21 N -0.916 5.916 22 Si 0.970 3.030 23 H -0.274 1.274 24 H -0.268 1.268 25 H -0.272 1.272 26 N -0.357 5.357 27 H 0.091 0.909 28 H 0.153 0.847 29 H 0.161 0.839 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.159 0.841 36 H 0.119 0.881 37 H 0.426 0.574 38 H 0.162 0.838 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.099 0.901 42 H 0.026 0.974 43 H 0.053 0.947 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.967 -22.693 16.328 28.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.247 4.247 3 C 0.330 3.670 4 O -0.475 6.475 5 N -0.321 5.321 6 C -0.021 4.021 7 C -0.222 4.222 8 C -0.019 4.019 9 C 0.287 3.713 10 O -0.416 6.416 11 N -0.274 5.274 12 C 0.018 3.982 13 C -0.331 4.331 14 C -0.043 4.043 15 C -0.143 4.143 16 N -0.125 5.125 17 C 0.157 3.843 18 C -0.593 4.593 19 H 0.065 0.935 20 C -0.177 4.177 21 N -0.554 5.554 22 Si 0.794 3.206 23 H -0.200 1.200 24 H -0.193 1.193 25 H -0.197 1.197 26 N -0.187 5.187 27 H 0.109 0.891 28 H 0.171 0.829 29 H 0.179 0.821 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.176 0.824 36 H 0.137 0.863 37 H 0.264 0.736 38 H 0.180 0.820 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.118 0.882 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.752 -21.438 15.922 27.316 hybrid contribution -0.471 0.904 -0.331 1.072 sum -6.223 -20.534 15.591 26.522 Atomic orbital electron populations 1.25024 0.95245 1.04094 0.87800 1.22970 0.96659 0.96454 1.08605 1.19443 0.82334 0.90702 0.74540 1.90776 1.68921 1.35393 1.52376 1.47613 1.05334 1.07038 1.72121 1.21905 0.97480 0.83727 0.99017 1.22189 1.02628 1.02648 0.94773 1.21373 1.01552 0.88741 0.90282 1.22168 0.75947 0.79160 0.94018 1.90615 1.49821 1.54230 1.46983 1.42639 1.56539 1.24401 1.03793 1.19372 0.98450 0.93331 0.87055 1.21385 1.16255 1.06521 0.88914 1.21743 0.95743 0.88011 0.98805 1.20499 1.04301 1.02629 0.86903 1.48805 1.43008 1.18204 1.02519 1.19249 0.93258 0.83598 0.88169 1.21428 0.97540 1.06389 1.33972 0.93527 1.25707 0.97714 0.99753 0.94493 1.69987 1.19627 1.31099 1.34712 0.85379 0.78695 0.78425 0.78133 1.19964 1.19260 1.19655 1.77171 1.28744 1.20589 0.92236 0.89063 0.82876 0.82125 0.88763 0.89866 0.91965 0.92256 0.89424 0.82378 0.86267 0.73570 0.82024 0.88644 0.91397 0.88205 0.95606 0.92929 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 14.31 66.65 0.95 -0.18 16 2 C -0.23 -3.53 9.21 23.43 0.22 -3.31 16 3 C 0.54 12.81 7.62 86.57 0.66 13.47 16 4 O -0.59 -19.68 15.80 -4.09 -0.06 -19.74 16 5 N -0.59 -11.02 1.96 -830.44 -1.63 -12.65 16 6 C 0.10 1.11 5.84 86.38 0.50 1.62 16 7 C -0.16 -1.02 10.24 71.98 0.74 -0.29 16 8 C 0.11 1.96 5.89 85.63 0.50 2.47 16 9 C 0.50 14.27 7.87 87.66 0.69 14.96 16 10 O -0.54 -19.42 13.56 -3.06 -0.04 -19.46 16 11 N -0.62 -19.25 5.45 -307.50 -1.68 -20.93 16 12 C 0.27 11.43 8.11 133.32 1.08 12.52 16 13 C -0.30 -12.80 9.52 22.11 0.21 -12.59 16 14 C 0.09 3.82 6.92 41.38 0.29 4.11 16 15 C -0.09 -2.96 9.89 71.24 0.70 -2.25 16 16 N -0.34 -17.08 3.59 -338.43 -1.22 -18.29 16 17 C 0.28 14.88 5.81 85.63 0.50 15.38 16 18 C -0.56 -31.83 9.39 25.60 0.24 -31.59 16 19 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 20 C 0.02 1.37 5.46 84.66 0.46 1.83 16 21 N -0.92 -52.21 13.29 21.45 0.28 -51.92 16 22 Si 0.97 43.93 29.54 68.60 2.03 45.95 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 26 N -0.36 -17.21 12.59 -54.44 -0.69 -17.89 16 27 H 0.09 1.67 7.49 -2.91 -0.02 1.65 16 28 H 0.15 0.85 8.06 -2.91 -0.02 0.82 16 29 H 0.16 1.35 6.22 -2.91 -0.02 1.33 16 30 H 0.09 0.87 6.09 -2.39 -0.01 0.86 16 31 H 0.08 0.94 8.07 -2.39 -0.02 0.92 16 32 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.09 0.27 8.14 -2.39 -0.02 0.26 16 35 H 0.16 1.39 8.07 -2.39 -0.02 1.37 16 36 H 0.12 2.24 7.42 -2.39 -0.02 2.22 16 37 H 0.43 10.12 8.82 -92.71 -0.82 9.30 16 38 H 0.16 6.74 5.92 -2.91 -0.02 6.72 16 39 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 40 H 0.07 2.57 7.71 -2.39 -0.02 2.55 16 41 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 42 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.05 2.79 7.65 -2.39 -0.02 2.77 16 44 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -82.26 379.68 4.95 -77.30 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.20 Total: 21.49 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 7.75 Total: 16.14 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -4.92 Total: -121.68 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.11 Total: -39.20 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -82.26 4.95 -77.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901284198.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.047 kcal (2) G-P(sol) polarization free energy of solvation -82.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds