Wall clock time and date at job start Tue Mar 31 2020 14:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81394 * 109.47287 * 2 1 4 4 O 1.42101 * 110.54465 * 68.37913 * 3 2 1 5 5 O 1.42106 * 110.54323 * 291.62483 * 3 2 1 6 6 N 1.65594 * 104.45043 * 180.02562 * 3 2 1 7 7 C 1.46503 * 120.00003 * 65.00064 * 6 3 2 8 8 C 1.53127 * 109.52289 * 215.00015 * 7 6 3 9 9 C 1.53035 * 109.28110 * 182.37535 * 8 7 6 10 10 N 1.46846 * 109.52095 * 59.18096 * 9 8 7 11 11 C 1.46899 * 110.99769 * 174.16204 * 10 9 8 12 12 C 1.53003 * 109.46954 * 176.24392 * 11 10 9 13 13 O 1.42901 * 109.47142 * 62.31917 * 12 11 10 14 14 C 1.42898 * 113.99962 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47209 * 180.02562 * 14 13 12 16 16 H 1.08008 * 119.99756 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00222 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00008 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47150 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47230 * 120.00192 * 19 17 15 22 22 H 1.48506 * 109.47112 * 239.99791 * 19 17 15 23 23 C 1.46852 * 111.19608 * 298.25800 * 10 9 8 24 24 C 1.53027 * 109.52453 * 61.74635 * 23 10 9 25 25 H 1.09002 * 109.47533 * 59.99767 * 1 2 3 26 26 H 1.09001 * 109.47698 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46698 * 299.99744 * 1 2 3 28 28 H 1.09001 * 109.46616 * 239.99720 * 2 1 3 29 29 H 1.08998 * 109.47106 * 119.99960 * 2 1 3 30 30 H 0.97006 * 119.99869 * 245.00218 * 6 3 2 31 31 H 1.09001 * 109.52106 * 335.12282 * 7 6 3 32 32 H 1.09005 * 109.50143 * 62.43383 * 8 7 6 33 33 H 1.09004 * 109.50105 * 302.32060 * 8 7 6 34 34 H 1.08999 * 109.46163 * 299.16555 * 9 8 7 35 35 H 1.08995 * 109.45545 * 179.18975 * 9 8 7 36 36 H 1.08999 * 109.47405 * 56.24827 * 11 10 9 37 37 H 1.08998 * 109.47027 * 296.24213 * 11 10 9 38 38 H 1.08994 * 109.46982 * 182.31954 * 12 11 10 39 39 H 1.09002 * 109.47320 * 302.31987 * 12 11 10 40 40 H 1.08992 * 109.47285 * 300.00283 * 14 13 12 41 41 H 1.09004 * 109.47017 * 60.00313 * 14 13 12 42 42 H 0.97002 * 119.99962 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.45943 * 181.76154 * 23 10 9 44 44 H 1.09004 * 109.46022 * 301.72328 * 23 10 9 45 45 H 1.09003 * 109.50611 * 180.88019 * 24 23 10 46 46 H 1.09004 * 109.50674 * 60.75809 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8387 2.3438 1.2370 5 8 1.8386 2.3438 -1.2370 6 7 3.7843 1.5652 -0.0007 7 6 4.4666 0.9671 -1.1510 8 6 5.6813 0.1699 -0.6677 9 6 6.4235 -0.4030 -1.8772 10 7 6.8528 0.6939 -2.7542 11 6 7.6878 0.1925 -3.8539 12 6 8.0370 1.3464 -4.7959 13 8 8.7994 2.3257 -4.0874 14 6 9.1798 3.4517 -4.8808 15 6 9.9753 4.4146 -4.0376 16 1 10.1712 4.1890 -2.9996 17 6 10.4531 5.5835 -4.5910 18 7 10.2150 5.8580 -5.8549 19 14 11.4385 6.7773 -3.5455 20 1 11.5653 6.2399 -2.1670 21 1 12.7901 6.9527 -4.1353 22 1 10.7430 8.0888 -3.5030 23 6 5.7002 1.4445 -3.2685 24 6 4.9365 2.0726 -2.1006 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.2988 1.8763 0.7605 31 1 3.7805 0.3028 -1.6764 32 1 5.3493 -0.6453 -0.0248 33 1 6.3484 0.8263 -0.1087 34 1 5.7602 -1.0699 -2.4278 35 1 7.2971 -0.9591 -1.5371 36 1 7.1418 -0.5735 -4.4046 37 1 8.6044 -0.2354 -3.4481 38 1 8.6220 0.9671 -5.6338 39 1 7.1195 1.8009 -5.1696 40 1 9.7885 3.1158 -5.7201 41 1 8.2861 3.9500 -5.2566 42 1 10.5514 6.6802 -6.2444 43 1 6.0484 2.2301 -3.9391 44 1 5.0403 0.7689 -3.8127 45 1 4.0722 2.6167 -2.4815 46 1 5.5918 2.7589 -1.5642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903010752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:21 Heat of formation + Delta-G solvation = -121.424299 kcal Electronic energy + Delta-G solvation = -25744.449754 eV Core-core repulsion = 21989.138149 eV Total energy + Delta-G solvation = -3755.311606 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.39075 -37.35369 -36.83765 -36.18202 -35.33037 -33.60363 -32.71642 -31.49848 -30.87024 -28.33941 -26.60976 -24.52921 -23.93826 -23.09446 -22.26057 -21.08985 -20.04950 -19.45174 -17.94431 -17.07578 -16.58084 -16.36436 -16.08803 -15.60140 -15.39236 -14.93394 -14.55811 -14.45295 -14.32227 -14.05794 -13.94273 -13.61143 -13.47030 -12.97600 -12.94141 -12.42982 -12.36213 -12.30274 -12.25458 -12.13519 -12.02581 -11.83720 -11.37218 -11.25446 -11.23294 -11.03846 -10.92177 -10.77212 -10.69827 -10.45015 -10.34194 -9.93814 -9.54294 -9.03142 -8.75949 -8.12511 -8.05515 -6.06446 -4.07178 -0.04637 2.43438 3.32707 3.39152 3.46014 3.47540 3.83913 3.97764 4.14197 4.37472 4.39363 4.44541 4.66429 4.72118 4.83413 4.89424 4.99896 5.12082 5.18574 5.21306 5.26322 5.30323 5.40153 5.45122 5.49170 5.54016 5.62028 5.69895 5.84397 5.93799 5.97677 6.05978 6.12020 6.29689 6.31698 6.44074 6.73060 7.13908 7.25326 7.28486 7.47654 7.85718 8.21365 8.65422 9.07663 9.57670 11.05305 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016717 B = 0.002763 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.515594 B =10132.889743 C =11049.175950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.635 4.635 3 S 2.609 3.391 4 O -0.960 6.960 5 O -0.949 6.949 6 N -1.113 6.113 7 C 0.153 3.847 8 C -0.122 4.122 9 C 0.058 3.942 10 N -0.524 5.524 11 C 0.063 3.937 12 C 0.059 3.941 13 O -0.378 6.378 14 C 0.193 3.807 15 C -0.508 4.508 16 H 0.067 0.933 17 C 0.054 3.946 18 N -0.900 5.900 19 Si 0.907 3.093 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.053 3.947 24 C -0.134 4.134 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.419 0.581 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.029 0.971 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.081 0.919 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.262 0.738 43 H 0.093 0.907 44 H 0.027 0.973 45 H 0.081 0.919 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.618 -17.435 10.610 26.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.764 4.764 3 S 2.701 3.299 4 O -0.950 6.950 5 O -0.939 6.939 6 N -0.872 5.872 7 C 0.046 3.954 8 C -0.161 4.161 9 C -0.071 4.071 10 N -0.249 5.249 11 C -0.065 4.065 12 C -0.019 4.019 13 O -0.297 6.297 14 C 0.119 3.881 15 C -0.547 4.547 16 H 0.085 0.915 17 C -0.146 4.146 18 N -0.540 5.540 19 Si 0.734 3.266 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.075 4.075 24 C -0.173 4.173 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.254 0.746 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.047 0.953 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.045 0.955 45 H 0.100 0.900 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.853 -16.254 10.799 26.449 hybrid contribution 0.392 -0.504 -0.147 0.655 sum -17.461 -16.759 10.653 26.443 Atomic orbital electron populations 1.21499 0.90480 1.05029 1.03560 1.30538 1.07320 1.27002 1.11530 1.05085 0.73280 0.77117 0.74461 1.93607 1.83281 1.72897 1.45251 1.93631 1.83373 1.71546 1.45362 1.55659 1.25635 1.77809 1.28070 1.20892 0.94409 0.94466 0.85597 1.21908 0.96310 0.99830 0.98037 1.22034 0.98725 0.92515 0.93866 1.61829 1.19529 1.23904 1.19600 1.22125 0.97227 0.95464 0.91652 1.22359 0.95265 0.90551 0.93693 1.87968 1.71501 1.32055 1.38217 1.20186 0.94123 0.82599 0.91189 1.21090 1.32768 1.02964 0.97854 0.91469 1.24951 0.96558 0.97918 0.95216 1.69975 1.46315 1.25545 1.12157 0.86300 0.79418 0.80463 0.80420 1.19460 1.20942 1.20894 1.22172 0.90558 0.98131 0.96647 1.22121 1.00753 0.98075 0.96355 0.90847 0.90072 0.90947 0.85215 0.84972 0.74587 0.90651 0.91189 0.89741 0.95318 0.90292 0.94528 0.90026 0.94255 0.94322 0.98034 0.97941 0.92800 0.88912 0.95471 0.90003 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.92 37.16 0.37 -0.41 16 2 C -0.63 -3.38 6.68 37.16 0.25 -3.13 16 3 S 2.61 23.67 5.38 -107.50 -0.58 23.09 16 4 O -0.96 -11.72 18.08 -57.54 -1.04 -12.76 16 5 O -0.95 -12.11 17.19 -57.54 -0.99 -13.10 16 6 N -1.11 -9.30 5.37 -4.78 -0.03 -9.33 16 7 C 0.15 1.42 2.62 -67.80 -0.18 1.25 16 8 C -0.12 -1.05 5.63 -26.65 -0.15 -1.20 16 9 C 0.06 0.59 5.46 -3.84 -0.02 0.57 16 10 N -0.52 -7.35 4.67 -234.68 -1.10 -8.44 16 11 C 0.06 0.90 5.52 -3.82 -0.02 0.88 16 12 C 0.06 1.07 5.56 37.16 0.21 1.28 16 13 O -0.38 -9.06 10.23 -35.23 -0.36 -9.42 16 14 C 0.19 5.33 5.69 36.01 0.20 5.54 16 15 C -0.51 -15.12 9.43 -34.44 -0.32 -15.45 16 16 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 19 Si 0.91 22.17 29.54 -169.99 -5.02 17.15 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 23 C 0.05 0.73 5.04 -3.84 -0.02 0.71 16 24 C -0.13 -1.70 5.70 -26.65 -0.15 -1.86 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.13 0.51 7.45 -51.92 -0.39 0.13 16 29 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.42 3.06 8.80 -34.47 -0.30 2.76 16 31 H 0.08 0.56 7.16 -51.93 -0.37 0.18 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.04 0.68 6.05 -51.93 -0.31 0.37 16 40 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 41 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.09 1.52 5.79 -51.93 -0.30 1.22 16 44 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 1.09 7.51 -51.93 -0.39 0.70 16 46 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 378.77 15.07 5.71 5.71 Total: -1.00 -36.82 378.77 -10.55 -47.37 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -7.95 Total: -3.42 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 0.07 Total: -10.34 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: -0.39 Total: -44.28 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -2.39 Total: -35.28 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 23.67 SS G_CDS: -0.58 Total: 23.09 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.82 -10.55 -47.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903010752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.055 kcal (2) G-P(sol) polarization free energy of solvation -36.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds