Wall clock time and date at job start Tue Mar 31 2020 13:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46503 * 109.46827 * 2 1 4 4 C 1.46494 * 120.00008 * 94.91432 * 3 2 1 5 5 C 1.50703 * 109.46856 * 264.79940 * 4 3 2 6 6 H 1.07996 * 120.00354 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00162 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00024 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00419 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47139 * 269.99936 * 9 7 5 11 11 H 1.48498 * 109.47440 * 149.99626 * 9 7 5 12 12 H 1.48509 * 109.47041 * 29.99606 * 9 7 5 13 13 C 1.34776 * 119.99522 * 274.91079 * 3 2 1 14 14 O 1.21281 * 120.00413 * 4.81783 * 13 3 2 15 15 C 1.50707 * 119.99401 * 184.82206 * 13 3 2 16 16 H 1.08999 * 110.85580 * 305.37138 * 15 13 3 17 17 C 1.54735 * 110.97168 * 69.16709 * 15 13 3 18 18 C 1.51689 * 102.55193 * 142.35018 * 17 15 13 19 19 C 1.47552 * 125.87248 * 164.63720 * 18 17 15 20 20 C 1.37866 * 126.37530 * 359.68598 * 19 18 17 21 21 N 1.34601 * 107.40811 * 179.89704 * 20 19 18 22 22 C 1.46495 * 125.79893 * 180.13498 * 21 20 19 23 23 N 1.39954 * 108.40422 * 0.36932 * 21 20 19 24 24 C 1.30535 * 108.85328 * 359.76959 * 23 21 20 25 25 C 1.50701 * 125.95581 * 179.97438 * 24 23 21 26 26 N 1.29150 * 108.26187 * 344.60378 * 18 17 15 27 27 O 1.41400 * 112.85911 * 359.67616 * 26 18 17 28 28 H 1.09002 * 109.47031 * 64.95272 * 1 2 3 29 29 H 1.08999 * 109.47216 * 184.95497 * 1 2 3 30 30 H 1.08994 * 109.47148 * 304.95341 * 1 2 3 31 31 H 1.08998 * 109.47023 * 239.99565 * 2 1 3 32 32 H 1.09001 * 109.46698 * 119.99602 * 2 1 3 33 33 H 1.08998 * 109.47356 * 144.80140 * 4 3 2 34 34 H 1.08998 * 109.47765 * 24.79450 * 4 3 2 35 35 H 0.97008 * 119.99537 * 0.02562 * 8 7 5 36 36 H 1.08997 * 110.79138 * 260.61205 * 17 15 13 37 37 H 1.08996 * 110.79070 * 24.08647 * 17 15 13 38 38 H 1.08000 * 126.29366 * 0.03671 * 20 19 18 39 39 H 1.09002 * 109.47523 * 270.24713 * 22 21 20 40 40 H 1.08998 * 109.47112 * 30.24945 * 22 21 20 41 41 H 1.09002 * 109.47101 * 150.25314 * 22 21 20 42 42 H 1.08996 * 109.47484 * 270.00083 * 25 24 23 43 43 H 1.09009 * 109.47180 * 29.99857 * 25 24 23 44 44 H 1.08993 * 109.47265 * 149.99661 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3649 2.0356 1.2640 5 6 1.1865 2.8369 1.7545 6 1 0.2712 2.8570 1.1817 7 6 1.2773 3.5451 2.9340 8 7 2.3921 3.5211 3.6313 9 14 -0.1830 4.5389 3.5416 10 1 -0.1044 5.9180 2.9967 11 1 -0.1634 4.5910 5.0255 12 1 -1.4424 3.8975 3.0854 13 6 2.1487 2.0498 -1.1630 14 8 1.7802 1.5403 -2.2000 15 6 2.7525 3.4306 -1.1746 16 1 2.2240 4.0911 -0.4872 17 6 4.2625 3.3775 -0.8410 18 6 4.8399 4.4409 -1.7558 19 6 6.1816 5.0442 -1.6415 20 6 7.1313 4.7507 -0.6863 21 7 8.2084 5.5169 -0.9406 22 6 9.4548 5.5256 -0.1709 23 7 7.9332 6.3078 -2.0619 24 6 6.7295 6.0338 -2.4863 25 6 6.0440 6.6644 -3.6710 26 7 3.9554 4.7270 -2.6524 27 8 2.7654 3.9769 -2.5092 28 1 -0.3633 0.4351 -0.9310 29 1 -0.3633 -1.0238 0.0888 30 1 -0.3633 0.5887 0.8422 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.2158 2.6989 1.1085 34 1 2.6241 1.2799 2.0054 35 1 3.1506 3.0054 3.3156 36 1 4.4368 3.6307 0.2048 37 1 4.6768 2.3974 -1.0773 38 1 7.0306 4.0358 0.1169 39 1 9.3821 6.2610 0.6304 40 1 9.6245 4.5376 0.2570 41 1 10.2854 5.7848 -0.8275 42 1 5.4966 7.5490 -3.3457 43 1 6.7900 6.9510 -4.4123 44 1 5.3497 5.9492 -4.1120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930464472.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:28 Heat of formation + Delta-G solvation = 60.126263 kcal Electronic energy + Delta-G solvation = -27400.452765 eV Core-core repulsion = 23549.862583 eV Total energy + Delta-G solvation = -3850.590183 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.44697 -40.17279 -38.43902 -35.48245 -34.47737 -33.09405 -32.87019 -31.46384 -30.32007 -29.46161 -29.18842 -26.76299 -25.87088 -24.59871 -23.01317 -22.39934 -22.16426 -20.26677 -19.42475 -18.73878 -17.46614 -17.15034 -16.42870 -15.85850 -15.83465 -15.51551 -15.37609 -14.54804 -14.16885 -13.99729 -13.84237 -13.68082 -13.52303 -13.09401 -13.02088 -12.98019 -12.67695 -12.45833 -12.45171 -12.27402 -12.21389 -11.95800 -11.82975 -11.68298 -11.42192 -10.99212 -10.92832 -10.78827 -10.43045 -10.25244 -10.20026 -9.90983 -9.45357 -9.33361 -9.08946 -8.61103 -8.23577 -7.84472 -6.62000 -4.38665 1.21930 1.90888 2.17339 2.96068 3.02499 3.22916 3.33320 3.35043 3.50894 3.79777 4.18901 4.24763 4.35122 4.58317 4.72085 4.80710 4.83759 4.93555 5.03928 5.09145 5.11408 5.13960 5.33347 5.50427 5.60720 5.65845 5.69413 5.77679 5.85842 5.89315 5.91995 5.95444 6.10879 6.11759 6.38771 6.47073 6.50477 6.63660 6.64956 6.79803 7.26377 7.44960 7.66207 7.72877 7.96584 8.27797 8.55267 8.76212 9.31743 10.73787 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011525 B = 0.004061 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.908116 B = 6892.891255 C = 7967.317769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.123 3.877 3 N -0.589 5.589 4 C 0.220 3.780 5 C -0.618 4.618 6 H 0.058 0.942 7 C 0.027 3.973 8 N -0.904 5.904 9 Si 1.068 2.932 10 H -0.285 1.285 11 H -0.283 1.283 12 H -0.287 1.287 13 C 0.526 3.474 14 O -0.547 6.547 15 C 0.035 3.965 16 H 0.126 0.874 17 C -0.133 4.133 18 C 0.167 3.833 19 C -0.193 4.193 20 C 0.103 3.897 21 N -0.366 5.366 22 C 0.100 3.900 23 N -0.302 5.302 24 C 0.117 3.883 25 C -0.079 4.079 26 N -0.297 5.297 27 O -0.173 6.173 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.029 0.971 34 H 0.030 0.970 35 H 0.267 0.733 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.187 0.813 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.513 0.890 -4.406 13.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.000 4.000 3 N -0.321 5.321 4 C 0.100 3.900 5 C -0.657 4.657 6 H 0.077 0.923 7 C -0.178 4.178 8 N -0.539 5.539 9 Si 0.895 3.105 10 H -0.212 1.212 11 H -0.208 1.208 12 H -0.213 1.213 13 C 0.312 3.688 14 O -0.425 6.425 15 C -0.027 4.027 16 H 0.143 0.857 17 C -0.172 4.172 18 C -0.022 4.022 19 C -0.206 4.206 20 C -0.049 4.049 21 N -0.144 5.144 22 C -0.041 4.041 23 N -0.124 5.124 24 C -0.050 4.050 25 C -0.138 4.138 26 N -0.039 5.039 27 O -0.192 6.192 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.132 0.868 37 H 0.117 0.883 38 H 0.204 0.796 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.566 2.854 -4.843 13.766 hybrid contribution -0.131 -2.061 0.153 2.070 sum 12.435 0.794 -4.689 13.314 Atomic orbital electron populations 1.22113 0.96127 1.01113 1.03084 1.21253 0.94851 0.82440 1.01414 1.47985 1.63467 1.13333 1.07324 1.19693 0.96946 0.93116 0.80253 1.22379 1.00235 1.32722 1.10346 0.92325 1.25792 1.02000 0.96759 0.93270 1.70842 1.03299 1.39846 1.39918 0.83536 0.74386 0.76085 0.76466 1.21165 1.20808 1.21257 1.19801 0.79318 0.85998 0.83725 1.90648 1.50555 1.68798 1.32514 1.23505 0.95953 0.96004 0.87246 0.85706 1.22932 0.92851 0.99175 1.02291 1.23197 0.91984 0.92986 0.94075 1.17876 0.93322 1.06930 1.02495 1.22952 0.86792 0.96195 0.99001 1.48269 1.13018 1.30106 1.22996 1.21969 0.82798 1.04014 0.95358 1.77189 1.17114 1.17151 1.00945 1.22554 0.91211 0.94401 0.96863 1.20350 0.99620 1.01301 0.92479 1.78372 0.93847 1.11970 1.19706 1.91310 1.32617 1.65934 1.29319 0.92652 0.92810 0.91160 0.91512 0.90918 0.95322 0.95238 0.92269 0.86771 0.88274 0.79587 0.90193 0.88996 0.88980 0.90037 0.90902 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 10.21 37.16 0.38 -2.54 16 2 C 0.12 2.20 6.09 -4.04 -0.02 2.18 16 3 N -0.59 -11.97 2.48 -175.06 -0.43 -12.40 16 4 C 0.22 4.76 4.22 -5.20 -0.02 4.74 16 5 C -0.62 -15.35 8.77 -34.44 -0.30 -15.65 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.03 0.69 5.46 -17.82 -0.10 0.60 16 8 N -0.90 -24.01 13.65 55.43 0.76 -23.26 16 9 Si 1.07 23.43 29.90 -169.99 -5.08 18.35 16 10 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 13 C 0.53 11.32 6.92 -10.98 -0.08 11.25 16 14 O -0.55 -13.14 16.30 -13.31 -0.22 -13.35 16 15 C 0.03 0.69 3.26 -26.97 -0.09 0.61 16 16 H 0.13 2.65 7.49 -51.93 -0.39 2.27 16 17 C -0.13 -2.15 5.43 -26.48 -0.14 -2.29 16 18 C 0.17 2.71 7.27 -79.44 -0.58 2.13 16 19 C -0.19 -2.71 6.12 -105.12 -0.64 -3.35 16 20 C 0.10 1.14 11.35 -16.47 -0.19 0.95 16 21 N -0.37 -3.92 3.99 -67.56 -0.27 -4.19 16 22 C 0.10 0.58 11.45 59.84 0.69 1.27 16 23 N -0.30 -4.05 12.51 33.89 0.42 -3.62 16 24 C 0.12 1.63 7.26 -82.03 -0.60 1.03 16 25 C -0.08 -0.95 10.03 36.01 0.36 -0.59 16 26 N -0.30 -5.51 10.71 35.29 0.38 -5.13 16 27 O -0.17 -3.70 11.82 -30.24 -0.36 -4.06 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.36 7.97 -51.93 -0.41 0.95 16 31 H 0.07 1.16 7.65 -51.93 -0.40 0.76 16 32 H 0.07 1.17 7.79 -51.93 -0.40 0.76 16 33 H 0.03 0.60 4.56 -51.93 -0.24 0.37 16 34 H 0.03 0.66 7.66 -51.93 -0.40 0.26 16 35 H 0.27 6.85 7.22 -40.82 -0.29 6.55 16 36 H 0.11 1.72 6.69 -51.93 -0.35 1.37 16 37 H 0.10 1.50 7.90 -51.93 -0.41 1.09 16 38 H 0.19 1.44 8.06 -52.49 -0.42 1.01 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 44 H 0.09 1.23 6.69 -51.93 -0.35 0.89 16 LS Contribution 370.93 15.07 5.59 5.59 Total: -1.00 -33.14 370.93 -6.77 -39.91 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.22 Total: 1.85 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -1.33 Total: 0.32 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.85 Total: -48.61 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.57 Total: -17.41 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.08 Total: 18.35 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.14 -6.77 -39.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464472.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.032 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds