Wall clock time and date at job start Tue Mar 31 2020 13:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46901 * 2 1 4 4 C 1.46500 * 120.00489 * 270.00023 * 3 2 1 5 5 C 1.50700 * 109.47041 * 269.99916 * 4 3 2 6 6 H 1.07994 * 120.00041 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00062 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99536 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00363 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46944 * 60.00407 * 9 7 5 11 11 H 1.48495 * 109.47525 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47242 * 300.00889 * 9 7 5 13 13 C 1.34786 * 119.99793 * 90.00257 * 3 2 1 14 14 O 1.21283 * 120.00057 * 179.97438 * 13 3 2 15 15 C 1.50696 * 119.99764 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47304 * 185.89398 * 15 13 3 17 17 C 1.48104 * 111.00538 * 176.28882 * 16 15 13 18 18 C 1.51016 * 105.70674 * 213.30738 * 17 16 15 19 19 N 1.32325 * 132.62513 * 197.37465 * 18 17 16 20 20 C 1.31849 * 120.78204 * 180.02562 * 19 18 17 21 21 C 1.50696 * 119.02399 * 179.97438 * 20 19 18 22 22 N 1.31811 * 121.95338 * 359.69173 * 20 19 18 23 23 C 1.32939 * 120.70854 * 0.58802 * 22 20 19 24 24 O 1.35519 * 120.62970 * 179.72659 * 23 22 20 25 25 C 1.38257 * 108.22290 * 17.37013 * 18 17 16 26 26 C 1.48139 * 110.99412 * 61.29599 * 16 15 13 27 27 H 1.08997 * 109.46725 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47142 * 299.99614 * 1 2 3 29 29 H 1.09000 * 109.47037 * 59.99866 * 1 2 3 30 30 H 1.09002 * 109.47142 * 240.00386 * 2 1 3 31 31 H 1.09000 * 109.47037 * 120.00133 * 2 1 3 32 32 H 1.09003 * 109.46657 * 30.00078 * 4 3 2 33 33 H 1.09001 * 109.46967 * 149.99910 * 4 3 2 34 34 H 0.97004 * 119.99352 * 179.97438 * 8 7 5 35 35 H 1.09008 * 109.47208 * 65.90077 * 15 13 3 36 36 H 1.08991 * 109.47583 * 305.89903 * 15 13 3 37 37 H 1.08999 * 110.20038 * 94.24913 * 17 16 15 38 38 H 1.09000 * 110.20192 * 332.36869 * 17 16 15 39 39 H 1.09001 * 109.47312 * 89.99365 * 21 20 19 40 40 H 1.09003 * 109.47041 * 209.99564 * 21 20 19 41 41 H 1.09004 * 109.47219 * 329.99780 * 21 20 19 42 42 H 0.96697 * 113.99764 * 269.72105 * 24 23 22 43 43 H 1.08996 * 110.21393 * 27.62120 * 26 16 15 44 44 H 1.08999 * 110.21751 * 265.70902 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0720 -1.2687 5 6 3.6858 1.8353 -1.7037 6 1 4.3426 1.2305 -1.0961 7 6 4.1491 2.3900 -2.8778 8 7 3.3490 3.1261 -3.6179 9 14 5.9135 2.0972 -3.4167 10 1 6.1418 0.6406 -3.5936 11 1 6.1610 2.7972 -4.7027 12 1 6.8406 2.6213 -2.3818 13 6 2.2429 2.0166 1.1673 14 8 2.6476 3.1599 1.1674 15 6 1.9913 1.3063 2.4723 16 7 2.1734 2.2476 3.5853 17 6 1.8478 1.6076 4.8806 18 6 1.2625 2.7016 5.7415 19 7 1.0701 2.8089 7.0463 20 6 0.5266 3.8941 7.5612 21 6 0.3251 3.9739 9.0525 22 7 0.1591 4.9136 6.8109 23 6 0.3158 4.8766 5.4913 24 8 -0.0676 5.9234 4.7208 25 6 0.8863 3.7458 4.9172 26 6 1.2124 3.3712 3.4927 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5816 1.6878 -2.0283 33 1 2.0954 3.1412 -1.1382 34 1 3.6751 3.5166 -4.4437 35 1 2.6938 0.4794 2.5773 36 1 0.9719 0.9208 2.4856 37 1 2.7517 1.2090 5.3412 38 1 1.1169 0.8122 4.7343 39 1 1.2096 4.4112 9.5158 40 1 -0.5435 4.5958 9.2691 41 1 0.1636 2.9724 9.4515 42 1 -0.9810 5.8680 4.4083 43 1 0.3100 3.0529 2.9709 44 1 1.6689 4.2156 2.9763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931317266.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:35 Heat of formation + Delta-G solvation = 0.940633 kcal Electronic energy + Delta-G solvation = -26991.642208 eV Core-core repulsion = 23138.485544 eV Total energy + Delta-G solvation = -3853.156664 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.87111 -39.55855 -38.05833 -37.74243 -35.32030 -33.49670 -32.87069 -32.55577 -30.19776 -29.98949 -28.89439 -27.45502 -26.07945 -24.12654 -23.08229 -22.49203 -22.26944 -21.52011 -18.96183 -18.66573 -18.04064 -16.77507 -16.51174 -16.35908 -15.88226 -15.70883 -15.03059 -14.71571 -14.52437 -14.26518 -14.14442 -13.89700 -13.46149 -13.36889 -13.24306 -12.98946 -12.75897 -12.69276 -12.41113 -12.36536 -12.15606 -12.03154 -11.73487 -11.50610 -11.22122 -10.95704 -10.87692 -10.77129 -10.65278 -10.54874 -10.14197 -9.66816 -9.56679 -9.54323 -8.96229 -8.48294 -8.43986 -7.70998 -6.05473 -4.10100 0.54940 0.66411 2.99542 3.13310 3.31013 3.31718 3.32831 3.36606 3.41340 3.64879 3.95717 3.99882 4.32957 4.44526 4.53155 4.78910 4.92955 5.00803 5.11072 5.14829 5.19692 5.23547 5.29173 5.31283 5.34491 5.43994 5.50775 5.55673 5.57527 5.67705 5.93029 5.96054 6.04435 6.16013 6.38296 6.46691 6.58319 6.65961 7.04346 7.12724 7.40761 7.50861 7.78612 7.90863 8.21685 8.36030 8.88181 9.05037 9.55139 11.02616 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.002866 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.846428 B = 9767.424368 C =10130.305548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.597 5.597 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.505 3.495 14 O -0.521 6.521 15 C 0.024 3.976 16 N -0.478 5.478 17 C 0.083 3.917 18 C 0.182 3.818 19 N -0.512 5.512 20 C 0.338 3.662 21 C -0.082 4.082 22 N -0.535 5.535 23 C 0.382 3.618 24 O -0.469 6.469 25 C -0.226 4.226 26 C 0.093 3.907 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.109 0.891 36 H 0.064 0.936 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.407 0.593 43 H 0.064 0.936 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.859 -5.250 19.408 22.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.330 5.330 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.290 3.710 14 O -0.397 6.397 15 C -0.107 4.107 16 N -0.202 5.202 17 C -0.045 4.045 18 C 0.035 3.965 19 N -0.228 5.228 20 C 0.071 3.929 21 C -0.140 4.140 22 N -0.261 5.261 23 C 0.195 3.805 24 O -0.277 6.277 25 C -0.232 4.232 26 C -0.035 4.035 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.127 0.873 36 H 0.081 0.919 37 H 0.131 0.869 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.267 0.733 43 H 0.082 0.918 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.666 -4.041 20.150 22.711 hybrid contribution -0.212 -0.573 -1.484 1.605 sum -9.878 -4.614 18.666 21.617 Atomic orbital electron populations 1.22229 0.96892 1.01446 1.02176 1.21425 0.93386 0.84299 1.02791 1.48263 1.63904 1.13242 1.07626 1.19262 0.96292 0.93588 0.77918 1.21388 0.96910 1.31996 1.06238 0.92491 1.24929 0.97847 0.94900 0.96397 1.69922 1.35748 1.33386 1.14387 0.86560 0.84832 0.78216 0.77833 1.20272 1.21209 1.20124 1.19956 0.79271 0.87162 0.84581 1.90691 1.44518 1.17749 1.86735 1.22464 1.01773 0.95825 0.90639 1.65258 1.47526 1.07374 1.00033 1.21694 1.01112 0.93056 0.88675 1.22008 0.90716 0.94922 0.88855 1.67423 1.15702 1.26922 1.12768 1.23046 0.89110 0.83153 0.97574 1.20577 1.03853 1.04246 0.85354 1.67924 1.22438 1.30146 1.05550 1.18778 0.91281 0.84040 0.86400 1.84753 1.35099 1.41992 1.65822 1.22411 1.04789 0.95638 1.00348 1.21503 0.94716 0.96967 0.90302 0.92100 0.93409 0.91923 0.89745 0.91824 0.95033 0.93895 0.92666 0.87293 0.91856 0.86948 0.90225 0.89358 0.89438 0.89295 0.73330 0.91838 0.86283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 10.18 37.16 0.38 -1.66 16 2 C 0.11 1.54 5.85 -4.04 -0.02 1.51 16 3 N -0.60 -11.84 2.46 -175.05 -0.43 -12.27 16 4 C 0.25 6.27 5.16 -5.19 -0.03 6.25 16 5 C -0.53 -14.66 9.39 -34.44 -0.32 -14.99 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 9 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.51 9.83 7.32 -10.98 -0.08 9.75 16 14 O -0.52 -12.55 14.27 5.56 0.08 -12.47 16 15 C 0.02 0.33 3.67 -4.98 -0.02 0.31 16 16 N -0.48 -6.83 5.29 -236.54 -1.25 -8.08 16 17 C 0.08 0.92 6.61 -4.16 -0.03 0.89 16 18 C 0.18 2.34 7.49 -82.22 -0.62 1.72 16 19 N -0.51 -6.48 10.34 -6.96 -0.07 -6.55 16 20 C 0.34 4.01 7.64 -157.14 -1.20 2.81 16 21 C -0.08 -0.61 10.31 36.00 0.37 -0.24 16 22 N -0.54 -7.04 10.37 -10.82 -0.11 -7.15 16 23 C 0.38 5.08 7.84 -16.77 -0.13 4.95 16 24 O -0.47 -5.52 13.58 -18.25 -0.25 -5.77 16 25 C -0.23 -3.06 6.28 -104.23 -0.65 -3.71 16 26 C 0.09 1.35 5.39 -4.22 -0.02 1.32 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.53 7.12 -51.93 -0.37 0.16 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 31 H 0.06 0.74 6.60 -51.93 -0.34 0.40 16 32 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.11 1.29 7.70 -51.92 -0.40 0.89 16 36 H 0.06 0.70 6.64 -51.93 -0.34 0.35 16 37 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 0.69 7.71 -51.93 -0.40 0.29 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.41 2.55 9.06 45.56 0.41 2.96 16 43 H 0.06 0.84 7.75 -51.93 -0.40 0.43 16 44 H 0.12 2.09 7.12 -51.93 -0.37 1.72 16 LS Contribution 367.28 15.07 5.53 5.53 Total: -1.00 -35.93 367.28 -8.78 -44.70 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.52 Total: 0.35 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -2.47 Total: 10.58 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -1.13 Total: -59.69 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.17 Total: -18.23 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.93 -8.78 -44.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931317266.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.644 kcal (2) G-P(sol) polarization free energy of solvation -35.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds