Wall clock time and date at job start Tue Mar 31 2020 13:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.46983 * 2 1 4 4 C 1.34772 * 120.00023 * 251.31236 * 3 2 1 5 5 O 1.21588 * 120.00199 * 181.17145 * 4 3 2 6 6 C 1.47539 * 120.00022 * 1.18182 * 4 3 2 7 7 C 1.39806 * 120.98001 * 31.08070 * 6 4 3 8 8 N 1.32183 * 118.97490 * 179.69808 * 7 6 4 9 9 C 1.31934 * 121.14504 * 0.62053 * 8 7 6 10 10 C 1.50697 * 118.90490 * 179.67602 * 9 8 7 11 11 N 1.31727 * 122.19674 * 359.65237 * 9 8 7 12 12 C 1.32777 * 120.86850 * 0.02850 * 11 9 8 13 13 O 1.35282 * 120.61085 * 180.02562 * 12 11 9 14 14 C 1.42897 * 117.00297 * 359.97371 * 13 12 11 15 15 C 1.46503 * 120.00146 * 71.31739 * 3 2 1 16 16 C 1.53497 * 114.20902 * 119.99796 * 15 3 2 17 17 N 1.47060 * 87.98622 * 87.51763 * 16 15 3 18 18 C 1.36938 * 136.05943 * 207.08785 * 17 16 15 19 19 H 1.08001 * 119.99869 * 7.83766 * 18 17 16 20 20 C 1.38809 * 119.99876 * 187.84611 * 18 17 16 21 21 N 1.31620 * 120.00214 * 172.42896 * 20 18 17 22 22 Si 1.86803 * 120.00149 * 352.42520 * 20 18 17 23 23 H 1.48510 * 109.47047 * 175.29185 * 22 20 18 24 24 H 1.48490 * 109.47127 * 295.29281 * 22 20 18 25 25 H 1.48502 * 109.47151 * 55.29515 * 22 20 18 26 26 C 1.47073 * 87.88395 * 27.34367 * 17 16 15 27 27 H 1.09006 * 109.46894 * 60.00011 * 1 2 3 28 28 H 1.08996 * 109.47022 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47322 * 300.00178 * 1 2 3 30 30 H 1.08995 * 109.47322 * 239.99822 * 2 1 3 31 31 H 1.08999 * 109.46641 * 119.99687 * 2 1 3 32 32 H 1.07997 * 120.51010 * 359.97438 * 7 6 4 33 33 H 1.09002 * 109.47616 * 269.97884 * 10 9 8 34 34 H 1.08996 * 109.47331 * 29.97737 * 10 9 8 35 35 H 1.08997 * 109.47225 * 149.97940 * 10 9 8 36 36 H 1.09000 * 109.47258 * 59.99940 * 14 13 12 37 37 H 1.08996 * 109.46966 * 179.97438 * 14 13 12 38 38 H 1.09000 * 109.47095 * 300.00194 * 14 13 12 39 39 H 1.08999 * 113.27777 * 346.93049 * 15 3 2 40 40 H 1.09000 * 113.46366 * 332.73864 * 16 15 3 41 41 H 1.08994 * 113.46753 * 202.30092 * 16 15 3 42 42 H 0.97005 * 119.99516 * 5.12628 * 21 20 18 43 43 H 1.08999 * 113.46543 * 87.43664 * 26 17 16 44 44 H 1.09003 * 113.46687 * 217.87587 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.5955 1.8919 -1.1056 5 8 3.0200 3.0313 -1.0989 6 6 2.7121 1.0685 -2.3243 7 6 1.7574 0.0934 -2.6280 8 7 1.8976 -0.6176 -3.7335 9 6 2.9242 -0.4290 -4.5405 10 6 3.0381 -1.2731 -5.7838 11 7 3.8528 0.4727 -4.2961 12 6 3.7912 1.2375 -3.2124 13 8 4.7475 2.1623 -2.9667 14 6 5.8074 2.2684 -3.9192 15 6 1.8793 2.2073 1.2019 16 6 3.2102 2.7136 1.7751 17 7 3.1003 3.8688 0.8717 18 6 3.9731 4.7274 0.2583 19 1 5.0359 4.5418 0.3053 20 6 3.4916 5.8364 -0.4237 21 7 4.3297 6.7403 -0.8850 22 14 1.6541 6.0459 -0.6871 23 1 1.3932 7.3560 -1.3359 24 1 1.1512 4.9533 -1.5579 25 1 0.9573 5.9950 0.6233 26 6 1.6401 3.7002 0.9222 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.9160 -0.0733 -1.9719 33 1 3.6064 -2.1757 -5.5594 34 1 2.0414 -1.5478 -6.1290 35 1 3.5488 -0.7063 -6.5622 36 1 5.3949 2.5258 -4.8947 37 1 6.5035 3.0453 -3.6031 38 1 6.3321 1.3154 -3.9865 39 1 1.2074 1.7774 1.9447 40 1 4.0556 2.0640 1.5481 41 1 3.1547 2.9808 2.8303 42 1 5.2863 6.5956 -0.8143 43 1 1.1708 4.2276 1.7526 44 1 1.1479 3.8912 -0.0314 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950473968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:14 Heat of formation + Delta-G solvation = 116.136352 kcal Electronic energy + Delta-G solvation = -29213.442593 eV Core-core repulsion = 25365.281190 eV Total energy + Delta-G solvation = -3848.161403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.47187 -39.91362 -38.45209 -36.86010 -35.58501 -33.36843 -32.56083 -31.98758 -30.17502 -29.07851 -27.69245 -27.11637 -25.21440 -24.01011 -23.83917 -22.95164 -22.49250 -20.34698 -18.58024 -18.19676 -17.92908 -17.21914 -16.95834 -16.20638 -15.57711 -15.32876 -14.74036 -14.59214 -14.49304 -14.39244 -14.17813 -13.83270 -13.51103 -13.17223 -12.94442 -12.81571 -12.66646 -12.52936 -12.35825 -11.96577 -11.72061 -11.64653 -11.53346 -11.21522 -11.19110 -10.95536 -10.81928 -10.30868 -10.18448 -10.11499 -9.45865 -9.14228 -9.11107 -8.89307 -8.69800 -8.28178 -7.95733 -6.60042 -5.93837 -2.76698 0.62360 1.13859 2.98014 3.26662 3.31176 3.59539 3.70907 3.80091 3.82840 3.93559 4.02300 4.64113 4.78831 4.88363 4.92264 4.95855 5.01593 5.13828 5.17217 5.31304 5.32813 5.34175 5.38900 5.41204 5.49419 5.61879 5.64252 5.70144 5.71731 5.75080 5.90799 6.08945 6.14376 6.17717 6.33560 6.40201 6.52214 6.63335 6.80736 7.22497 7.28169 7.43360 7.89698 8.00396 8.56678 9.01612 9.33893 9.90220 10.73308 11.60753 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012929 B = 0.006337 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.117201 B = 4417.545280 C = 5675.369597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.087 3.913 3 N -0.598 5.598 4 C 0.520 3.480 5 O -0.391 6.391 6 C -0.251 4.251 7 C 0.179 3.821 8 N -0.549 5.549 9 C 0.359 3.641 10 C -0.085 4.085 11 N -0.579 5.579 12 C 0.407 3.593 13 O -0.257 6.257 14 C 0.037 3.963 15 C 0.105 3.895 16 C 0.106 3.894 17 N -0.599 5.599 18 C -0.237 4.237 19 H 0.072 0.928 20 C -0.025 4.025 21 N -0.954 5.954 22 Si 1.079 2.921 23 H -0.307 1.307 24 H -0.298 1.298 25 H -0.296 1.296 26 C 0.094 3.906 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.192 0.808 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.039 0.961 41 H 0.043 0.957 42 H 0.253 0.747 43 H 0.048 0.952 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.796 -20.045 -3.638 21.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.037 4.037 3 N -0.336 5.336 4 C 0.303 3.697 5 O -0.255 6.255 6 C -0.260 4.260 7 C 0.016 3.984 8 N -0.269 5.269 9 C 0.092 3.908 10 C -0.143 4.143 11 N -0.311 5.311 12 C 0.220 3.780 13 O -0.157 6.157 14 C -0.058 4.058 15 C 0.000 4.000 16 C -0.022 4.022 17 N -0.326 5.326 18 C -0.363 4.363 19 H 0.089 0.911 20 C -0.221 4.221 21 N -0.600 5.600 22 Si 0.915 3.085 23 H -0.236 1.236 24 H -0.227 1.227 25 H -0.224 1.224 26 C -0.032 4.032 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.208 0.792 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.295 -18.429 -4.966 20.098 hybrid contribution 1.236 -0.794 1.153 1.867 sum -5.059 -19.223 -3.813 20.240 Atomic orbital electron populations 1.22312 0.95930 1.02311 1.03133 1.22028 0.94353 0.83923 1.03367 1.47315 1.61849 1.12137 1.12253 1.17958 0.81101 0.88403 0.82231 1.91496 1.39768 1.14377 1.79863 1.21229 0.98840 1.04602 1.01375 1.24097 0.96384 0.86442 0.91446 1.68292 1.23892 1.29211 1.05476 1.23078 0.84015 0.89023 0.94648 1.20598 1.04116 0.98082 0.91510 1.68033 1.31748 1.10716 1.20587 1.20148 0.86556 0.84569 0.86755 1.86598 1.32453 1.49423 1.47234 1.23012 0.88032 1.02459 0.92322 1.22691 0.98902 0.92145 0.86283 1.22753 0.95069 0.90208 0.94163 1.45665 1.00237 1.35705 1.51040 1.19747 0.87959 1.01300 1.27308 0.91072 1.25336 1.06249 0.92209 0.98290 1.70940 1.02817 1.33597 1.52656 0.83573 0.76062 0.73576 0.75299 1.23571 1.22682 1.22358 1.23001 0.89551 0.91327 0.99370 0.92068 0.91303 0.91313 0.89472 0.90964 0.79191 0.89436 0.89314 0.89605 0.92043 0.87825 0.92379 0.88965 0.94250 0.94002 0.93734 0.93474 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 9.19 37.16 0.34 -1.26 16 2 C 0.09 0.98 5.64 -4.04 -0.02 0.96 16 3 N -0.60 -9.92 2.81 -166.95 -0.47 -10.38 16 4 C 0.52 10.66 6.92 -12.47 -0.09 10.57 16 5 O -0.39 -10.08 8.38 -12.19 -0.10 -10.18 16 6 C -0.25 -4.50 5.49 -104.56 -0.57 -5.08 16 7 C 0.18 2.55 8.68 -16.81 -0.15 2.41 16 8 N -0.55 -7.61 10.31 -10.44 -0.11 -7.72 16 9 C 0.36 4.90 7.64 -157.13 -1.20 3.70 16 10 C -0.08 -0.75 10.31 36.00 0.37 -0.38 16 11 N -0.58 -9.21 9.26 -10.47 -0.10 -9.30 16 12 C 0.41 7.57 7.51 -16.19 -0.12 7.45 16 13 O -0.26 -5.25 9.18 -35.02 -0.32 -5.58 16 14 C 0.04 0.57 10.41 101.05 1.05 1.62 16 15 C 0.10 1.81 4.65 -67.68 -0.31 1.49 16 16 C 0.11 2.16 8.24 -8.51 -0.07 2.09 16 17 N -0.60 -15.38 2.07 -184.63 -0.38 -15.77 16 18 C -0.24 -7.21 8.81 -15.06 -0.13 -7.35 16 19 H 0.07 2.34 8.05 -52.49 -0.42 1.92 16 20 C -0.02 -0.80 5.34 -17.43 -0.09 -0.89 16 21 N -0.95 -32.23 13.70 55.49 0.76 -31.47 16 22 Si 1.08 30.02 24.21 -169.99 -4.12 25.91 16 23 H -0.31 -8.73 7.11 56.52 0.40 -8.33 16 24 H -0.30 -8.18 6.61 56.52 0.37 -7.81 16 25 H -0.30 -7.57 6.14 56.52 0.35 -7.22 16 26 C 0.09 2.08 4.70 -8.37 -0.04 2.04 16 27 H 0.06 0.60 6.98 -51.93 -0.36 0.23 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.61 7.61 -51.93 -0.39 0.22 16 30 H 0.09 0.98 4.00 -51.93 -0.21 0.77 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.19 2.21 3.43 -52.49 -0.18 2.03 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 37 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 39 H 0.09 1.21 7.67 -51.93 -0.40 0.81 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.25 8.47 8.73 -40.82 -0.36 8.11 16 43 H 0.05 1.00 7.68 -51.93 -0.40 0.60 16 44 H 0.05 1.29 4.04 -51.93 -0.21 1.08 16 LS Contribution 342.88 15.07 5.17 5.17 Total: -1.00 -39.05 342.88 -6.74 -45.79 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -6.04 Total: -3.85 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: -1.04 Total: 17.39 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -0.30 Total: -74.64 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.42 Total: -15.76 kcal Atomic # 14 Polarization: 30.02 SS G_CDS: -4.12 Total: 25.91 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -39.05 -6.74 -45.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950473968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.927 kcal (2) G-P(sol) polarization free energy of solvation -39.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds