Wall clock time and date at job start Tue Mar 31 2020 13:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47582 * 2 1 4 4 C 1.34776 * 120.00117 * 82.69461 * 3 2 1 5 5 O 1.21675 * 120.00119 * 183.12984 * 4 3 2 6 6 C 1.46765 * 119.99711 * 3.12255 * 4 3 2 7 7 C 1.36941 * 126.94218 * 347.97701 * 6 4 3 8 8 N 1.33563 * 107.86784 * 179.97438 * 7 6 4 9 9 C 1.30242 * 109.65217 * 359.97113 * 8 7 6 10 10 N 1.35179 * 108.97188 * 0.06860 * 9 8 7 11 11 C 1.46509 * 123.69971 * 179.87863 * 10 9 8 12 12 C 1.53476 * 108.12295 * 343.75397 * 11 10 9 13 13 O 1.43043 * 109.61006 * 48.15247 * 12 11 10 14 14 C 1.43426 * 114.05406 * 290.03788 * 13 12 11 15 15 C 1.46498 * 119.99876 * 262.69287 * 3 2 1 16 16 C 1.53946 * 113.74138 * 222.92065 * 15 3 2 17 17 N 1.47807 * 86.04256 * 222.08715 * 16 15 3 18 18 C 1.36930 * 134.46418 * 204.64979 * 17 16 15 19 19 H 1.07997 * 120.00895 * 184.79388 * 18 17 16 20 20 C 1.38816 * 119.99928 * 4.78624 * 18 17 16 21 21 N 1.31627 * 119.99669 * 5.11358 * 20 18 17 22 22 Si 1.86801 * 120.00462 * 185.10665 * 20 18 17 23 23 H 1.48501 * 109.46952 * 95.00225 * 22 20 18 24 24 H 1.48498 * 109.47027 * 215.00060 * 22 20 18 25 25 H 1.48504 * 109.46799 * 334.99994 * 22 20 18 26 26 C 1.47585 * 91.04982 * 24.55146 * 17 16 15 27 27 H 1.08991 * 109.47213 * 185.67861 * 1 2 3 28 28 H 1.09000 * 109.46462 * 305.67838 * 1 2 3 29 29 H 1.08994 * 109.46825 * 65.67396 * 1 2 3 30 30 H 1.09004 * 109.47089 * 240.00085 * 2 1 3 31 31 H 1.09004 * 109.47048 * 120.00246 * 2 1 3 32 32 H 1.08007 * 126.06920 * 0.22356 * 7 6 4 33 33 H 1.08996 * 109.73259 * 224.09096 * 11 10 9 34 34 H 1.09003 * 109.76724 * 103.43150 * 11 10 9 35 35 H 1.08996 * 109.44753 * 288.10699 * 12 11 10 36 36 H 1.09006 * 109.42047 * 168.17968 * 12 11 10 37 37 H 1.08992 * 109.78926 * 290.04565 * 14 13 12 38 38 H 1.09009 * 109.83174 * 169.24183 * 14 13 12 39 39 H 1.08998 * 112.94649 * 354.51488 * 15 3 2 40 40 H 1.09000 * 113.76889 * 336.35276 * 16 15 3 41 41 H 1.08998 * 113.77021 * 107.74789 * 16 15 3 42 42 H 0.96998 * 119.99753 * 179.97438 * 21 20 18 43 43 H 1.09000 * 113.77214 * 221.15878 * 26 17 16 44 44 H 1.08999 * 113.77081 * 89.75503 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1032 2.0660 1.1577 5 8 2.4545 3.2309 1.1512 6 6 1.7716 1.4066 2.4263 7 6 1.1510 0.1965 2.5872 8 7 1.0396 -0.0358 3.8978 9 6 1.5546 0.9578 4.5641 10 7 2.0208 1.8780 3.6905 11 6 2.6640 3.1306 4.0953 12 6 2.3399 3.3772 5.5751 13 8 2.5847 2.1842 6.3254 14 6 1.6524 1.1265 6.0625 15 6 2.4148 2.0179 -1.2584 16 6 3.7159 2.8344 -1.1570 17 7 3.0235 3.8477 -1.9806 18 6 3.4371 4.8399 -2.8289 19 1 2.7146 5.5140 -3.2647 20 6 4.7853 4.9793 -3.1288 21 7 5.6540 4.0985 -2.6793 22 14 5.3668 6.4169 -4.1703 23 1 5.8133 7.5216 -3.2840 24 1 6.4987 5.9815 -5.0272 25 1 4.2504 6.8905 -5.0276 26 6 1.7078 3.3596 -1.5237 27 1 -0.3633 -1.0225 0.1017 28 1 -0.3632 0.5994 0.8348 29 1 -0.3633 0.4233 -0.9364 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.8152 -0.4563 1.7950 33 1 2.2798 3.9533 3.4923 34 1 3.7430 3.0503 3.9634 35 1 1.2920 3.6600 5.6748 36 1 2.9705 4.1809 5.9552 37 1 0.6752 1.3863 6.4693 38 1 2.0063 0.2004 6.5158 39 1 2.3909 1.3339 -2.1067 40 1 3.9452 3.1718 -0.1462 41 1 4.5667 2.3688 -1.6546 42 1 6.5960 4.1957 -2.8892 43 1 0.9582 3.3124 -2.3136 44 1 1.3460 3.8516 -0.6209 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950555724.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:08 Heat of formation + Delta-G solvation = 86.826170 kcal Electronic energy + Delta-G solvation = -28145.179115 eV Core-core repulsion = 24295.746727 eV Total energy + Delta-G solvation = -3849.432388 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.69667 -39.97243 -38.56509 -36.83673 -35.87389 -34.15001 -32.21675 -30.84964 -30.31047 -29.98862 -27.55217 -26.36717 -24.69177 -24.26316 -23.56483 -23.25839 -22.18102 -20.65676 -19.44274 -18.84061 -17.52799 -17.17506 -16.64960 -16.44732 -16.04502 -15.70613 -15.45283 -14.96018 -14.85307 -14.69353 -14.50435 -13.98791 -13.82352 -13.66025 -13.18050 -12.92776 -12.46233 -12.34541 -12.29090 -12.13193 -11.70984 -11.60467 -11.48065 -11.30083 -11.12112 -10.84512 -10.65076 -10.58826 -10.27042 -10.11332 -9.93490 -9.78968 -9.53170 -9.39125 -8.67234 -8.51106 -8.15584 -6.75384 -5.69990 -3.02404 1.29244 2.23630 2.67566 3.19706 3.33063 3.42172 3.43525 3.47532 3.49080 3.82315 4.16628 4.43934 4.52866 4.60088 4.81485 4.88004 4.92163 4.95732 5.12105 5.15480 5.17434 5.30092 5.30777 5.35891 5.39245 5.55445 5.66386 5.67738 5.77298 5.83373 5.99651 6.16690 6.31794 6.35176 6.48184 6.59120 6.60434 6.82837 6.91604 7.35091 7.57244 7.61437 7.69461 7.75839 8.04654 8.43576 9.10094 9.76803 10.67634 11.45803 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017271 B = 0.003691 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.844903 B = 7585.137018 C = 8796.018558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.079 3.921 3 N -0.584 5.584 4 C 0.584 3.416 5 O -0.518 6.518 6 C -0.057 4.057 7 C -0.003 4.003 8 N -0.480 5.480 9 C 0.174 3.826 10 N -0.419 5.419 11 C 0.068 3.932 12 C 0.048 3.952 13 O -0.372 6.372 14 C 0.150 3.850 15 C 0.093 3.907 16 C 0.148 3.852 17 N -0.602 5.602 18 C -0.216 4.216 19 H 0.078 0.922 20 C -0.009 4.009 21 N -0.919 5.919 22 Si 0.911 3.089 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.113 3.887 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.208 0.792 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.123 0.877 37 H 0.086 0.914 38 H 0.128 0.872 39 H 0.108 0.892 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.252 0.748 43 H 0.037 0.963 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.289 -9.675 15.695 21.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.044 4.044 3 N -0.317 5.317 4 C 0.371 3.629 5 O -0.394 6.394 6 C -0.175 4.175 7 C -0.155 4.155 8 N -0.200 5.200 9 C -0.089 4.089 10 N -0.100 5.100 11 C -0.054 4.054 12 C -0.030 4.030 13 O -0.289 6.289 14 C 0.072 3.928 15 C -0.010 4.010 16 C 0.022 3.978 17 N -0.328 5.328 18 C -0.344 4.344 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.566 5.566 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.206 1.206 26 C -0.014 4.014 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.224 0.776 33 H 0.135 0.865 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.141 0.859 37 H 0.103 0.897 38 H 0.146 0.854 39 H 0.126 0.874 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.947 -9.362 15.984 21.025 hybrid contribution 0.507 1.520 -1.226 2.017 sum -9.440 -7.842 14.758 19.194 Atomic orbital electron populations 1.22422 0.95821 1.02438 1.03423 1.22210 0.94487 0.83537 1.04160 1.47797 1.63759 1.13312 1.06820 1.16721 0.78560 0.85775 0.81890 1.90874 1.46383 1.15616 1.86556 1.20917 1.11571 0.98838 0.86132 1.24075 1.02245 0.95243 0.93954 1.69801 1.21126 1.24422 1.04623 1.24104 1.01399 0.87858 0.95504 1.45008 1.42595 1.17220 1.05188 1.22891 1.00077 0.85346 0.97048 1.23089 1.02689 0.88307 0.88869 1.88159 1.53685 1.22941 1.64124 1.21275 0.94681 0.92346 0.84510 1.24195 1.00067 0.93547 0.83152 1.22851 0.92827 0.86813 0.95343 1.45593 1.00502 1.38243 1.48504 1.18992 0.91867 1.05698 1.17848 0.90379 1.24766 0.95759 0.99058 1.00935 1.69831 1.01635 1.35615 1.49543 0.86106 0.78241 0.81926 0.79547 1.21746 1.21718 1.20582 1.22931 0.90549 0.91059 0.96840 0.91111 0.91757 0.91487 0.89545 0.89140 0.77638 0.86518 0.88274 0.91478 0.85896 0.89654 0.85443 0.87391 0.93107 0.90670 0.93788 0.94454 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 8.57 37.16 0.32 -1.43 16 2 C 0.08 0.89 5.67 -4.04 -0.02 0.87 16 3 N -0.58 -9.36 2.75 -169.39 -0.47 -9.83 16 4 C 0.58 10.31 6.99 -12.82 -0.09 10.22 16 5 O -0.52 -11.00 11.25 5.21 0.06 -10.94 16 6 C -0.06 -0.86 6.72 -82.48 -0.55 -1.42 16 7 C 0.00 -0.04 8.51 -17.27 -0.15 -0.18 16 8 N -0.48 -6.56 11.19 -10.29 -0.12 -6.68 16 9 C 0.17 2.20 7.78 -155.30 -1.21 0.99 16 10 N -0.42 -5.83 3.16 -109.66 -0.35 -6.18 16 11 C 0.07 0.81 6.61 -3.79 -0.03 0.79 16 12 C 0.05 0.40 6.83 37.40 0.26 0.66 16 13 O -0.37 -3.63 10.79 -35.23 -0.38 -4.01 16 14 C 0.15 1.33 7.29 36.21 0.26 1.59 16 15 C 0.09 1.81 4.60 -70.13 -0.32 1.49 16 16 C 0.15 3.68 6.99 -2.84 -0.02 3.66 16 17 N -0.60 -16.26 3.70 -177.85 -0.66 -16.91 16 18 C -0.22 -6.31 10.69 -15.06 -0.16 -6.47 16 19 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.92 -27.99 11.29 55.49 0.63 -27.36 16 22 Si 0.91 22.73 29.56 -169.99 -5.02 17.70 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 26 C 0.11 2.50 8.27 -2.96 -0.02 2.47 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.69 6.49 -51.93 -0.34 0.36 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.86 7.85 -51.93 -0.41 0.45 16 31 H 0.09 0.95 4.78 -51.93 -0.25 0.71 16 32 H 0.21 2.21 3.30 -52.48 -0.17 2.04 16 33 H 0.12 1.50 7.33 -51.93 -0.38 1.12 16 34 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 36 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.13 0.91 8.14 -51.92 -0.42 0.49 16 39 H 0.11 1.92 7.89 -51.93 -0.41 1.51 16 40 H 0.05 1.37 5.65 -51.93 -0.29 1.08 16 41 H 0.08 2.05 6.87 -51.93 -0.36 1.70 16 42 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.05 1.11 6.36 -51.93 -0.33 0.78 16 LS Contribution 343.76 15.07 5.18 5.18 Total: -1.00 -36.23 343.76 -8.82 -45.05 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.86 Total: 1.09 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: -1.83 Total: 12.88 kcal Atomic # 7 Polarization: -66.00 SS G_CDS: -0.96 Total: -66.96 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.32 Total: -14.95 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.23 -8.82 -45.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950555724.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.876 kcal (2) G-P(sol) polarization free energy of solvation -36.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds