Wall clock time and date at job start Tue Mar 31 2020 13:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.47008 * 2 1 4 4 C 1.34776 * 119.99958 * 82.73914 * 3 2 1 5 5 O 1.21594 * 120.00155 * 183.31277 * 4 3 2 6 6 C 1.47498 * 120.00059 * 3.31316 * 4 3 2 7 7 N 1.32365 * 120.50814 * 352.84954 * 6 4 3 8 8 C 1.32176 * 120.60347 * 179.69616 * 7 6 4 9 9 C 1.50697 * 119.14169 * 180.27411 * 8 7 6 10 10 C 1.36190 * 121.71566 * 0.56954 * 8 7 6 11 11 C 1.50703 * 119.50119 * 179.70655 * 10 8 7 12 12 N 1.34902 * 121.00234 * 359.42274 * 10 8 7 13 13 H 0.97000 * 120.36952 * 180.25525 * 12 10 8 14 14 C 1.35149 * 119.26180 * 0.28040 * 12 10 8 15 15 O 1.21861 * 120.78470 * 179.97438 * 14 12 10 16 16 C 1.46498 * 120.00175 * 262.73230 * 3 2 1 17 17 C 1.53948 * 113.74545 * 223.24655 * 16 3 2 18 18 N 1.47813 * 86.03587 * 222.08637 * 17 16 3 19 19 C 1.36933 * 134.45464 * 204.64251 * 18 17 16 20 20 H 1.08003 * 120.00266 * 179.86088 * 19 18 17 21 21 C 1.38816 * 120.00159 * 359.87088 * 19 18 17 22 22 N 1.31614 * 119.99868 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99871 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47479 * 59.99763 * 23 21 19 25 25 H 1.48508 * 109.46967 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47314 * 299.99151 * 23 21 19 27 27 C 1.47584 * 91.05343 * 24.54677 * 18 17 16 28 28 H 1.08994 * 109.47057 * 300.00122 * 1 2 3 29 29 H 1.09003 * 109.46515 * 60.00554 * 1 2 3 30 30 H 1.09004 * 109.46964 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46932 * 239.99526 * 2 1 3 32 32 H 1.09003 * 109.46623 * 120.00226 * 2 1 3 33 33 H 1.09009 * 109.46799 * 270.28541 * 9 8 7 34 34 H 1.08998 * 109.47526 * 30.28097 * 9 8 7 35 35 H 1.08999 * 109.47517 * 150.29199 * 9 8 7 36 36 H 1.08994 * 109.47054 * 179.72908 * 11 10 8 37 37 H 1.08997 * 109.47277 * 59.72010 * 11 10 8 38 38 H 1.09000 * 109.46915 * 299.72839 * 11 10 8 39 39 H 1.09002 * 112.94105 * 354.83814 * 16 3 2 40 40 H 1.08998 * 113.76673 * 336.34684 * 17 16 3 41 41 H 1.08994 * 113.76810 * 107.74321 * 17 16 3 42 42 H 0.96994 * 120.00088 * 180.02562 * 22 21 19 43 43 H 1.08995 * 113.77007 * 221.15478 * 27 18 17 44 44 H 1.08998 * 113.76676 * 89.75617 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1039 2.0657 1.1578 5 8 2.4516 3.2308 1.1511 6 6 1.7756 1.4015 2.4332 7 7 1.2624 0.1814 2.4429 8 6 0.9731 -0.4179 3.5849 9 6 0.3958 -1.8096 3.5576 10 6 1.1777 0.1918 4.7853 11 6 0.8238 -0.5354 6.0570 12 7 1.6977 1.4347 4.8537 13 1 1.8430 1.8589 5.7139 14 6 2.0135 2.0825 3.7104 15 8 2.4843 3.2061 3.7398 16 6 2.4138 2.0183 -1.2585 17 6 3.7192 2.8284 -1.1598 18 7 3.0289 3.8465 -1.9794 19 6 3.4446 4.8382 -2.8272 20 1 2.7179 5.4657 -3.3218 21 6 4.8001 5.0368 -3.0513 22 7 5.6857 4.2723 -2.4484 23 14 5.3671 6.3892 -4.2084 24 1 4.8902 7.7027 -3.7061 25 1 6.8507 6.3941 -4.2747 26 1 4.8115 6.1462 -5.5639 27 6 1.7123 3.3636 -1.5193 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 -0.6918 -1.7510 3.5125 34 1 0.7676 -2.3402 2.6811 35 1 0.6936 -2.3443 4.4596 36 1 1.0569 0.0966 6.9138 37 1 1.3990 -1.4591 6.1195 38 1 -0.2407 -0.7697 6.0572 39 1 2.3840 1.3359 -2.1079 40 1 3.9532 3.1630 -0.1491 41 1 4.5661 2.3596 -1.6608 42 1 6.6328 4.4113 -2.6046 43 1 0.9601 3.3214 -2.3069 44 1 1.3556 3.8558 -0.6145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950609470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:20 Heat of formation + Delta-G solvation = 62.124997 kcal Electronic energy + Delta-G solvation = -28041.976280 eV Core-core repulsion = 24191.472770 eV Total energy + Delta-G solvation = -3850.503511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.92840 -39.72127 -38.09837 -36.80138 -35.74099 -34.75526 -33.27056 -31.88366 -29.89250 -29.48120 -27.50716 -26.61270 -24.87172 -24.50426 -24.04947 -22.97916 -22.38854 -20.20083 -19.36143 -18.60175 -17.68426 -16.71038 -16.42404 -16.34543 -16.04540 -15.09958 -14.70505 -14.57658 -14.45559 -14.27358 -14.07368 -13.78892 -13.58992 -13.46606 -13.30309 -13.11061 -12.63191 -12.37657 -12.31037 -12.05431 -12.02589 -11.59826 -11.50181 -11.25361 -11.18528 -11.03621 -10.70743 -10.65503 -10.45484 -9.92384 -9.83807 -9.67880 -9.29022 -8.97015 -8.47745 -8.17311 -7.84181 -6.60110 -5.55492 -2.85629 0.01187 1.52206 2.23588 2.84044 3.31399 3.52982 3.56739 3.58341 3.72625 3.78134 4.00409 4.05485 4.35452 4.66046 4.74542 4.83077 4.96077 5.13828 5.20219 5.30433 5.34606 5.44975 5.52947 5.58245 5.70855 5.74764 5.77988 5.90342 6.03008 6.04097 6.11028 6.19331 6.25017 6.53844 6.55287 6.77904 6.86921 7.15464 7.35025 7.48753 7.65467 7.75226 7.82446 7.97348 8.18751 8.73304 9.25500 9.91653 10.84323 11.61957 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023554 B = 0.003434 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.453420 B = 8151.137987 C = 8921.849416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.100 3.900 3 N -0.583 5.583 4 C 0.567 3.433 5 O -0.481 6.481 6 C 0.022 3.978 7 N -0.345 5.345 8 C -0.040 4.040 9 C -0.083 4.083 10 C 0.145 3.855 11 C -0.126 4.126 12 N -0.589 5.589 13 H 0.419 0.581 14 C 0.494 3.506 15 O -0.476 6.476 16 C 0.091 3.909 17 C 0.155 3.845 18 N -0.604 5.604 19 C -0.214 4.214 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.112 3.888 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.252 0.748 43 H 0.036 0.964 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.528 -19.505 18.557 30.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 N -0.317 5.317 4 C 0.351 3.649 5 O -0.352 6.352 6 C -0.147 4.147 7 N -0.063 5.063 8 C -0.165 4.165 9 C -0.141 4.141 10 C 0.030 3.970 11 C -0.183 4.183 12 N -0.225 5.225 13 H 0.259 0.741 14 C 0.285 3.715 15 O -0.346 6.346 16 C -0.013 4.013 17 C 0.029 3.971 18 N -0.330 5.330 19 C -0.343 4.343 20 H 0.096 0.904 21 C -0.207 4.207 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.015 4.015 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.960 -18.435 17.575 28.578 hybrid contribution 0.466 1.294 0.714 1.550 sum -12.493 -17.141 18.289 28.007 Atomic orbital electron populations 1.22020 0.96339 1.01141 1.01504 1.21993 0.94421 0.82684 1.03250 1.47936 1.63376 1.13887 1.06479 1.17072 0.79961 0.86095 0.81736 1.90977 1.44065 1.14774 1.85334 1.24283 1.04718 0.91516 0.94181 1.68184 1.02830 1.07047 1.28223 1.20264 1.10090 1.00054 0.86054 1.20499 1.00617 0.89423 1.03511 1.21474 0.91726 0.85033 0.98756 1.21172 1.04177 1.01070 0.91903 1.43784 1.52245 1.14450 1.12050 0.74100 1.19144 0.81061 0.87176 0.84140 1.91102 1.41682 1.16702 1.85123 1.24121 1.00102 0.93508 0.83522 1.22747 0.92224 0.86491 0.95671 1.45680 1.00651 1.37789 1.48860 1.18946 0.91086 1.07817 1.16406 0.90426 1.24767 0.95582 0.99698 1.00609 1.69826 1.00381 1.40621 1.45948 0.86207 0.77418 0.81743 0.80428 1.21320 1.21684 1.21235 1.22925 0.90489 0.91307 0.96808 0.92761 0.93172 0.92385 0.91436 0.87884 0.90894 0.90218 0.90994 0.90514 0.88236 0.88355 0.87620 0.92711 0.91502 0.93813 0.94547 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.58 37.16 0.36 -1.39 16 2 C 0.10 1.31 5.74 -4.04 -0.02 1.29 16 3 N -0.58 -10.51 2.75 -169.13 -0.47 -10.98 16 4 C 0.57 11.39 7.01 -12.49 -0.09 11.30 16 5 O -0.48 -12.11 11.24 -15.03 -0.17 -12.28 16 6 C 0.02 0.35 6.70 -80.46 -0.54 -0.19 16 7 N -0.34 -4.09 4.43 -4.84 -0.02 -4.11 16 8 C -0.04 -0.33 6.70 -83.18 -0.56 -0.88 16 9 C -0.08 -0.37 9.66 36.00 0.35 -0.02 16 10 C 0.15 0.97 6.78 -81.98 -0.56 0.41 16 11 C -0.13 -0.23 8.83 36.01 0.32 0.09 16 12 N -0.59 -5.50 5.29 -9.45 -0.05 -5.55 16 13 H 0.42 2.71 8.64 -40.82 -0.35 2.36 16 14 C 0.49 7.68 7.92 -12.68 -0.10 7.58 16 15 O -0.48 -9.73 16.43 -15.27 -0.25 -9.98 16 16 C 0.09 1.92 4.60 -70.14 -0.32 1.60 16 17 C 0.15 4.16 6.79 -2.84 -0.02 4.14 16 18 N -0.60 -17.41 3.70 -177.88 -0.66 -18.07 16 19 C -0.21 -6.60 10.70 -15.06 -0.16 -6.76 16 20 H 0.08 2.29 7.83 -52.48 -0.41 1.88 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 22 N -0.92 -29.51 11.39 55.49 0.63 -28.88 16 23 Si 0.91 23.77 29.55 -169.99 -5.02 18.75 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 25 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 C 0.11 2.68 8.27 -2.96 -0.02 2.66 16 28 H 0.05 0.68 6.75 -51.93 -0.35 0.33 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 32 H 0.10 1.28 5.28 -51.96 -0.27 1.00 16 33 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.14 6.42 -51.93 -0.33 -0.19 16 36 H 0.08 0.06 7.89 -51.93 -0.41 -0.35 16 37 H 0.10 0.06 7.35 -51.93 -0.38 -0.33 16 38 H 0.10 0.06 8.09 -51.93 -0.42 -0.36 16 39 H 0.11 2.03 7.89 -51.93 -0.41 1.62 16 40 H 0.06 1.63 5.68 -51.93 -0.30 1.34 16 41 H 0.07 1.92 7.17 -51.93 -0.37 1.55 16 42 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.05 1.26 6.32 -51.93 -0.33 0.93 16 LS Contribution 353.08 15.07 5.32 5.32 Total: -1.00 -41.11 353.08 -8.15 -49.25 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -5.99 Total: -2.89 kcal Atomic # 6 Polarization: 20.88 SS G_CDS: -1.47 Total: 19.42 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -0.56 Total: -67.60 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.42 Total: -22.25 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -5.02 Total: 18.75 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -41.11 -8.15 -49.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950609470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.378 kcal (2) G-P(sol) polarization free energy of solvation -41.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds