Wall clock time and date at job start Tue Mar 31 2020 13:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47333 * 2 1 4 4 C 1.34781 * 119.99779 * 83.38805 * 3 2 1 5 5 O 1.21627 * 119.99557 * 184.52051 * 4 3 2 6 6 C 1.47321 * 120.00284 * 4.51869 * 4 3 2 7 7 C 1.36680 * 126.19755 * 174.01598 * 6 4 3 8 8 N 1.34500 * 106.73544 * 179.97438 * 7 6 4 9 9 C 1.36614 * 107.93178 * 0.09575 * 8 7 6 10 10 N 1.29479 * 108.90485 * 359.88629 * 9 8 7 11 11 C 1.51100 * 122.83665 * 179.87115 * 9 8 7 12 12 O 1.43439 * 107.76190 * 345.47993 * 11 9 8 13 13 C 1.43021 * 114.07836 * 49.75443 * 12 11 9 14 14 C 1.46642 * 128.72332 * 180.16718 * 8 7 6 15 15 C 1.46495 * 120.00173 * 263.39064 * 3 2 1 16 16 C 1.53950 * 113.74345 * 223.78746 * 15 3 2 17 17 N 1.47814 * 86.03494 * 222.08161 * 16 15 3 18 18 C 1.36942 * 134.45477 * 204.64141 * 17 16 15 19 19 H 1.07990 * 119.99621 * 184.75608 * 18 17 16 20 20 C 1.38811 * 119.99621 * 4.75571 * 18 17 16 21 21 N 1.31612 * 120.00484 * 5.16637 * 20 18 17 22 22 Si 1.86806 * 119.99350 * 185.17018 * 20 18 17 23 23 H 1.48502 * 109.46961 * 94.99986 * 22 20 18 24 24 H 1.48504 * 109.46572 * 214.99337 * 22 20 18 25 25 H 1.48492 * 109.47258 * 334.99225 * 22 20 18 26 26 C 1.47576 * 91.05297 * 24.55162 * 17 16 15 27 27 H 1.08992 * 109.47430 * 299.99828 * 1 2 3 28 28 H 1.08999 * 109.46606 * 60.00220 * 1 2 3 29 29 H 1.09001 * 109.46928 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47566 * 239.99534 * 2 1 3 31 31 H 1.09009 * 109.47092 * 119.99739 * 2 1 3 32 32 H 1.08005 * 126.63492 * 359.67616 * 7 6 4 33 33 H 1.09004 * 109.80699 * 105.05160 * 11 9 8 34 34 H 1.09007 * 109.79960 * 225.86191 * 11 9 8 35 35 H 1.08992 * 109.43349 * 49.62115 * 13 12 11 36 36 H 1.09003 * 109.42824 * 169.52585 * 13 12 11 37 37 H 1.09002 * 109.73547 * 43.93521 * 14 8 7 38 38 H 1.09000 * 109.77985 * 283.25509 * 14 8 7 39 39 H 1.08998 * 112.94492 * 355.38348 * 15 3 2 40 40 H 1.08998 * 113.76742 * 336.34710 * 16 15 3 41 41 H 1.08994 * 113.76686 * 107.74462 * 16 15 3 42 42 H 0.97003 * 120.00158 * 180.02562 * 21 20 18 43 43 H 1.09004 * 113.76983 * 221.15355 * 26 17 16 44 44 H 1.08995 * 113.77300 * 89.75153 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1163 2.0613 1.1595 5 8 2.4429 3.2329 1.1515 6 6 1.8277 1.3857 2.4365 7 6 1.9962 1.9145 3.6855 8 7 1.6145 0.9679 4.5615 9 6 1.2191 -0.1291 3.8497 10 7 1.3459 0.1228 2.5860 11 6 0.7249 -1.3972 4.5060 12 8 1.0787 -1.3377 5.8948 13 6 0.7097 -0.1153 6.5391 14 6 1.5960 1.0277 6.0266 15 6 2.4002 2.0231 -1.2602 16 6 3.7135 2.8219 -1.1759 17 7 3.0195 3.8508 -1.9789 18 6 3.4307 4.8445 -2.8267 19 1 2.7091 5.5308 -3.2443 20 6 4.7751 4.9694 -3.1490 21 7 5.6402 4.0738 -2.7227 22 14 5.3564 6.4090 -4.1879 23 1 5.8325 7.4999 -3.2999 24 1 6.4675 5.9671 -5.0685 25 1 4.2315 6.9043 -5.0212 26 6 1.7061 3.3758 -1.5021 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.3687 2.8999 3.9233 33 1 -0.3580 -1.4684 4.4035 34 1 1.1974 -2.2622 4.0405 35 1 -0.3342 0.1092 6.3203 36 1 0.8402 -0.2194 7.6163 37 1 1.1867 1.9846 6.3507 38 1 2.6083 0.9104 6.4134 39 1 2.3521 1.3465 -2.1134 40 1 3.9653 3.1481 -0.1668 41 1 4.5490 2.3495 -1.6925 42 1 6.5797 4.1614 -2.9477 43 1 0.9418 3.3447 -2.2787 44 1 1.3670 3.8650 -0.5891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950624649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:04 Heat of formation + Delta-G solvation = 73.683290 kcal Electronic energy + Delta-G solvation = -27685.403165 eV Core-core repulsion = 23835.400859 eV Total energy + Delta-G solvation = -3850.002306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.66979 -39.72732 -38.61370 -36.59858 -35.25375 -34.33160 -31.95213 -30.82726 -30.18323 -29.74948 -27.42429 -26.34548 -24.50685 -24.38241 -23.82171 -22.92571 -21.90698 -20.09765 -19.77917 -18.67498 -17.54207 -16.99787 -16.64263 -16.34966 -16.09612 -15.59069 -15.36202 -15.04455 -14.65344 -14.47781 -14.17201 -14.06329 -13.68022 -13.42394 -13.38961 -13.10111 -12.62019 -12.33169 -12.15003 -12.03216 -11.82020 -11.46508 -11.24709 -11.08605 -10.99590 -10.75001 -10.65964 -10.51760 -10.08239 -9.99554 -9.80049 -9.71424 -9.35033 -9.19232 -8.59822 -8.52060 -7.81193 -6.61407 -5.58053 -2.89764 1.58301 2.19813 2.29112 3.10817 3.46215 3.50256 3.55054 3.56518 3.76559 3.83119 3.91487 4.28994 4.40657 4.57882 4.63068 4.78796 4.85087 4.97360 5.01673 5.12655 5.38917 5.42834 5.47118 5.64432 5.69499 5.83116 5.84251 5.94081 6.01085 6.08864 6.19524 6.24081 6.39310 6.55041 6.61751 6.75336 6.82062 6.92633 7.15794 7.49641 7.64120 7.75391 7.80787 8.06463 8.17359 8.79617 9.22193 9.88748 10.82015 11.57864 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026606 B = 0.002987 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.124671 B = 9370.257305 C = 9970.634502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.100 3.900 3 N -0.588 5.588 4 C 0.594 3.406 5 O -0.521 6.521 6 C -0.050 4.050 7 C 0.042 3.958 8 N -0.455 5.455 9 C 0.154 3.846 10 N -0.433 5.433 11 C 0.153 3.847 12 O -0.372 6.372 13 C 0.048 3.952 14 C 0.068 3.932 15 C 0.092 3.908 16 C 0.149 3.851 17 N -0.604 5.604 18 C -0.212 4.212 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.910 3.090 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.112 3.888 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.190 0.810 33 H 0.085 0.915 34 H 0.128 0.872 35 H 0.067 0.933 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.251 0.749 43 H 0.034 0.966 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.438 -14.155 20.768 28.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 N -0.319 5.319 4 C 0.380 3.620 5 O -0.397 6.397 6 C -0.178 4.178 7 C -0.096 4.096 8 N -0.139 5.139 9 C -0.109 4.109 10 N -0.154 5.154 11 C 0.074 3.926 12 O -0.289 6.289 13 C -0.029 4.029 14 C -0.054 4.054 15 C -0.012 4.012 16 C 0.023 3.977 17 N -0.330 5.330 18 C -0.340 4.340 19 H 0.095 0.905 20 C -0.208 4.208 21 N -0.567 5.567 22 Si 0.741 3.259 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.015 4.015 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.207 0.793 33 H 0.103 0.897 34 H 0.145 0.855 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.112 -14.004 20.132 27.352 hybrid contribution 0.455 1.705 0.028 1.765 sum -11.657 -12.299 20.161 26.336 Atomic orbital electron populations 1.22003 0.96504 1.01039 1.01428 1.21879 0.94288 0.82678 1.03541 1.47904 1.63549 1.13953 1.06540 1.16852 0.77881 0.85486 0.81756 1.90871 1.47386 1.15045 1.86413 1.20956 1.10666 0.92290 0.93936 1.22441 1.02793 0.95788 0.88601 1.45148 1.48591 1.12717 1.07455 1.24309 1.06207 0.92363 0.88003 1.70431 1.16654 1.14148 1.14151 1.21255 1.00171 0.91857 0.79276 1.88160 1.82284 1.36174 1.22252 1.22978 0.97656 0.83339 0.98942 1.22802 1.03644 1.02003 0.76971 1.24041 0.99956 0.93347 0.83814 1.22807 0.92781 0.86769 0.95332 1.45620 1.00858 1.37531 1.49038 1.18997 0.92135 1.05103 1.17771 0.90468 1.24756 0.95866 0.99008 1.01130 1.69838 1.01890 1.35063 1.49914 0.86114 0.78196 0.82043 0.79534 1.21827 1.21826 1.20667 1.22953 0.90365 0.91395 0.96770 0.92709 0.93431 0.92534 0.91635 0.87650 0.79263 0.89715 0.85460 0.91439 0.86179 0.87831 0.88457 0.87898 0.93281 0.90822 0.93905 0.94757 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.72 37.16 0.36 -1.59 16 2 C 0.10 1.45 5.74 -4.04 -0.02 1.42 16 3 N -0.59 -10.84 2.75 -169.20 -0.47 -11.31 16 4 C 0.59 11.50 7.03 -12.56 -0.09 11.42 16 5 O -0.52 -12.04 12.60 5.25 0.07 -11.98 16 6 C -0.05 -0.78 6.49 -82.89 -0.54 -1.31 16 7 C 0.04 0.54 11.38 -16.95 -0.19 0.35 16 8 N -0.46 -4.54 3.12 -113.32 -0.35 -4.90 16 9 C 0.15 1.64 7.79 -154.61 -1.20 0.44 16 10 N -0.43 -5.78 6.57 -6.95 -0.05 -5.83 16 11 C 0.15 1.07 7.29 36.20 0.26 1.33 16 12 O -0.37 -2.60 10.78 -35.23 -0.38 -2.98 16 13 C 0.05 0.21 6.81 37.39 0.25 0.46 16 14 C 0.07 0.37 7.28 -3.73 -0.03 0.34 16 15 C 0.09 1.98 4.60 -70.14 -0.32 1.65 16 16 C 0.15 3.97 7.00 -2.83 -0.02 3.95 16 17 N -0.60 -17.24 3.70 -177.88 -0.66 -17.89 16 18 C -0.21 -6.44 10.69 -15.06 -0.16 -6.60 16 19 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 21 N -0.92 -28.98 11.29 55.49 0.63 -28.35 16 22 Si 0.91 23.45 29.56 -169.99 -5.02 18.43 16 23 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 26 C 0.11 2.68 8.26 -2.97 -0.02 2.65 16 27 H 0.05 0.77 7.09 -51.93 -0.37 0.40 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.89 7.86 -51.93 -0.41 0.48 16 31 H 0.11 1.51 5.26 -51.92 -0.27 1.24 16 32 H 0.19 2.18 8.06 -52.48 -0.42 1.76 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.13 0.75 8.14 -51.92 -0.42 0.33 16 35 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 36 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 2.08 7.90 -51.93 -0.41 1.66 16 40 H 0.05 1.41 5.77 -51.93 -0.30 1.11 16 41 H 0.07 2.12 6.87 -51.93 -0.36 1.77 16 42 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.05 1.28 6.24 -51.93 -0.32 0.95 16 LS Contribution 351.68 15.07 5.30 5.30 Total: -1.00 -38.09 351.68 -8.96 -47.06 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -6.21 Total: -1.61 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: -1.82 Total: 14.06 kcal Atomic # 7 Polarization: -67.38 SS G_CDS: -0.90 Total: -68.28 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.31 Total: -14.96 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.02 Total: 18.43 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -38.09 -8.96 -47.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950624649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.739 kcal (2) G-P(sol) polarization free energy of solvation -38.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds