Wall clock time and date at job start Tue Mar 31 2020 13:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47197 * 2 1 4 4 C 1.34774 * 119.99849 * 274.70900 * 3 2 1 5 5 O 1.21576 * 120.00126 * 184.49625 * 4 3 2 6 6 C 1.47718 * 119.99952 * 4.48776 * 4 3 2 7 7 C 1.41300 * 125.95041 * 185.41886 * 6 4 3 8 8 C 1.34856 * 107.70473 * 179.97438 * 7 6 4 9 9 N 1.36390 * 107.92706 * 0.11886 * 8 7 6 10 10 N 1.32119 * 125.95425 * 5.10982 * 6 4 3 11 11 C 1.46725 * 123.62777 * 179.76639 * 9 8 7 12 12 C 1.53534 * 107.95526 * 343.02596 * 11 9 8 13 13 C 1.53227 * 109.29865 * 47.29024 * 12 11 9 14 14 O 1.36029 * 128.63489 * 180.15891 * 8 7 6 15 15 C 1.46506 * 120.00144 * 94.70754 * 3 2 1 16 16 C 1.53496 * 114.20605 * 232.58600 * 15 3 2 17 17 N 1.47063 * 87.98543 * 220.15014 * 16 15 3 18 18 C 1.36942 * 136.05401 * 207.08878 * 17 16 15 19 19 H 1.07994 * 120.00297 * 5.13419 * 18 17 16 20 20 C 1.38815 * 119.99693 * 185.13398 * 18 17 16 21 21 N 1.31617 * 119.99919 * 5.11863 * 20 18 17 22 22 Si 1.86793 * 119.99844 * 185.12081 * 20 18 17 23 23 H 1.48509 * 109.46984 * 264.99977 * 22 20 18 24 24 H 1.48501 * 109.47254 * 24.99980 * 22 20 18 25 25 H 1.48501 * 109.47418 * 145.00128 * 22 20 18 26 26 C 1.47061 * 87.88519 * 27.34033 * 17 16 15 27 27 H 1.09002 * 109.47392 * 300.00582 * 1 2 3 28 28 H 1.09002 * 109.46896 * 59.99853 * 1 2 3 29 29 H 1.08998 * 109.47389 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47155 * 239.99490 * 2 1 3 31 31 H 1.09007 * 109.46787 * 119.99419 * 2 1 3 32 32 H 1.08000 * 126.14522 * 359.95369 * 7 6 4 33 33 H 1.09001 * 109.76328 * 223.41353 * 11 9 8 34 34 H 1.08996 * 109.80691 * 102.66711 * 11 9 8 35 35 H 1.08989 * 109.50179 * 287.34167 * 12 11 9 36 36 H 1.09000 * 109.49964 * 167.23227 * 12 11 9 37 37 H 1.08993 * 109.50353 * 175.46129 * 13 12 11 38 38 H 1.09003 * 109.50678 * 55.34464 * 13 12 11 39 39 H 1.09002 * 113.27889 * 5.64758 * 15 3 2 40 40 H 1.08998 * 113.46931 * 105.36075 * 16 15 3 41 41 H 1.09000 * 113.46963 * 334.92763 * 16 15 3 42 42 H 0.97001 * 120.00081 * 180.02562 * 21 20 18 43 43 H 1.08995 * 113.46745 * 87.44124 * 26 17 16 44 44 H 1.09003 * 113.47087 * 217.88050 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1526 2.0484 -1.1633 5 8 2.6344 3.1646 -1.1717 6 6 1.7146 1.4235 -2.4280 7 6 1.8930 1.9591 -3.7233 8 6 1.3571 1.0897 -4.6040 9 7 0.8513 0.0369 -3.8997 10 7 1.0929 0.2636 -2.5456 11 6 0.1819 -1.1107 -4.5224 12 6 -0.2103 -0.7114 -5.9521 13 6 0.9864 -0.0439 -6.6378 14 8 1.2978 1.1822 -5.9598 15 6 2.3607 2.0371 1.2645 16 6 1.6756 3.3945 1.4751 17 7 2.9411 3.8872 2.0394 18 6 3.3102 4.8509 2.9396 19 1 2.5553 5.4056 3.4769 20 6 4.6549 5.1149 3.1614 21 7 5.5723 4.5118 2.4355 22 14 5.1621 6.3259 4.4901 23 1 5.3629 7.6677 3.8863 24 1 4.0978 6.4020 5.5229 25 1 6.4289 5.8707 5.1173 26 6 3.6360 2.8940 1.2068 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.3721 2.8964 -3.9647 33 1 -0.7114 -1.3695 -3.9538 34 1 0.8604 -1.9633 -4.5509 35 1 -1.0464 -0.0129 -5.9184 36 1 -0.5007 -1.6006 -6.5116 37 1 0.7382 0.1682 -7.6777 38 1 1.8476 -0.7109 -6.5974 39 1 2.3049 1.3701 2.1247 40 1 0.8610 3.3620 2.1986 41 1 1.3941 3.8877 0.5446 42 1 6.5120 4.6959 2.5908 43 1 3.8714 3.2551 0.2057 44 1 4.4918 2.4350 1.7019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950839094.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:57 Heat of formation + Delta-G solvation = 104.353668 kcal Electronic energy + Delta-G solvation = -27652.761783 eV Core-core repulsion = 23804.089445 eV Total energy + Delta-G solvation = -3848.672338 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.95936 -40.00138 -38.61751 -36.77067 -35.31554 -34.95929 -32.04985 -31.06336 -29.95656 -29.52833 -27.53622 -26.64754 -24.51711 -24.30408 -23.45033 -23.09740 -21.84471 -20.24610 -19.91472 -18.92311 -17.58209 -16.81902 -16.64046 -16.30978 -15.91897 -15.78370 -15.19693 -14.92822 -14.82311 -14.43737 -14.30996 -14.10418 -13.63119 -13.53531 -13.34603 -12.90843 -12.69152 -12.33371 -12.13778 -12.03062 -11.74002 -11.63794 -11.57039 -11.35773 -11.13531 -10.91243 -10.81215 -10.70934 -10.46985 -9.99122 -9.93100 -9.36071 -9.22567 -9.16607 -8.51932 -8.48897 -7.93118 -6.64305 -5.61374 -2.91122 1.37142 1.95028 2.17436 2.70360 3.36676 3.49642 3.53989 3.56128 3.66816 3.72768 3.93325 4.29238 4.32921 4.59509 4.63049 4.71208 4.83236 4.96307 5.16716 5.23861 5.28823 5.30978 5.43672 5.53672 5.65414 5.67761 5.78882 5.83375 5.84794 5.96346 5.98782 6.11199 6.29373 6.48783 6.54169 6.67594 6.77659 7.05246 7.08610 7.33065 7.40616 7.69064 7.78967 7.94971 8.12856 8.63655 9.19659 9.85787 10.83409 11.57224 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028008 B = 0.002952 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.474017 B = 9481.848688 C =10138.912808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.106 3.894 3 N -0.585 5.585 4 C 0.587 3.413 5 O -0.495 6.495 6 C 0.062 3.938 7 C -0.225 4.225 8 C 0.258 3.742 9 N -0.402 5.402 10 N -0.238 5.238 11 C 0.130 3.870 12 C -0.175 4.175 13 C 0.049 3.951 14 O -0.287 6.287 15 C 0.082 3.918 16 C 0.111 3.889 17 N -0.603 5.603 18 C -0.213 4.213 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.916 5.916 22 Si 0.912 3.088 23 H -0.290 1.290 24 H -0.281 1.281 25 H -0.291 1.291 26 C 0.145 3.855 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.165 0.835 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.072 0.928 39 H 0.109 0.891 40 H 0.034 0.966 41 H 0.045 0.955 42 H 0.252 0.748 43 H 0.072 0.928 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.288 -17.927 -18.582 29.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.017 4.017 3 N -0.317 5.317 4 C 0.372 3.628 5 O -0.367 6.367 6 C -0.105 4.105 7 C -0.254 4.254 8 C 0.093 3.907 9 N -0.199 5.199 10 N -0.069 5.069 11 C 0.009 3.991 12 C -0.214 4.214 13 C -0.026 4.026 14 O -0.194 6.194 15 C -0.021 4.021 16 C -0.016 4.016 17 N -0.329 5.329 18 C -0.340 4.340 19 H 0.098 0.902 20 C -0.206 4.206 21 N -0.563 5.563 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.206 1.206 25 H -0.217 1.217 26 C 0.019 3.981 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.183 0.817 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.127 0.873 37 H 0.136 0.864 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.251 -17.964 -18.004 28.678 hybrid contribution 0.410 0.952 0.016 1.037 sum -12.841 -17.012 -17.988 27.891 Atomic orbital electron populations 1.22100 0.96055 1.01379 1.02090 1.21701 0.94652 0.82456 1.02932 1.47850 1.63919 1.13835 1.06135 1.16972 0.79369 0.85201 0.81305 1.90869 1.42212 1.18390 1.85263 1.22251 1.00041 0.93082 0.95110 1.20253 1.12328 1.04086 0.88740 1.19432 0.97761 0.90790 0.82763 1.49476 1.47583 1.17963 1.04912 1.77886 1.20951 1.16815 0.91240 1.21899 0.98459 0.86242 0.92519 1.22638 0.99736 1.03872 0.95134 1.23091 0.97261 0.85199 0.97050 1.86664 1.87106 1.33206 1.12424 1.23923 1.01640 0.93140 0.83402 1.22721 0.91197 0.91286 0.96444 1.45337 1.01765 1.40289 1.45462 1.18904 0.91288 1.11527 1.12304 0.90182 1.24822 0.95671 1.00257 0.99842 1.69879 0.99696 1.45767 1.40941 0.86106 0.77835 0.80677 0.81178 1.21702 1.20619 1.21721 1.22743 0.92104 0.86739 0.96517 0.92918 0.92068 0.92406 0.89399 0.90726 0.81710 0.87970 0.89297 0.89245 0.87266 0.86352 0.90950 0.87275 0.94795 0.93780 0.93793 0.91041 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.63 37.16 0.36 -1.52 16 2 C 0.11 1.42 5.72 -4.04 -0.02 1.40 16 3 N -0.58 -10.29 2.77 -166.88 -0.46 -10.75 16 4 C 0.59 11.27 7.11 -12.39 -0.09 11.18 16 5 O -0.50 -11.55 12.47 5.30 0.07 -11.49 16 6 C 0.06 1.01 6.59 -82.71 -0.54 0.46 16 7 C -0.22 -3.41 10.59 -39.62 -0.42 -3.83 16 8 C 0.26 3.23 7.57 -16.72 -0.13 3.11 16 9 N -0.40 -4.43 4.08 -60.93 -0.25 -4.68 16 10 N -0.24 -3.21 7.43 33.43 0.25 -2.96 16 11 C 0.13 0.76 7.41 -3.64 -0.03 0.73 16 12 C -0.18 -0.65 6.16 -26.34 -0.16 -0.81 16 13 C 0.05 0.26 7.00 37.27 0.26 0.52 16 14 O -0.29 -2.98 10.65 -19.83 -0.21 -3.19 16 15 C 0.08 1.70 4.80 -67.68 -0.32 1.37 16 16 C 0.11 2.59 8.10 -8.52 -0.07 2.52 16 17 N -0.60 -16.99 3.77 -184.65 -0.70 -17.68 16 18 C -0.21 -6.39 10.74 -15.06 -0.16 -6.55 16 19 H 0.08 2.30 7.83 -52.49 -0.41 1.89 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 21 N -0.92 -29.01 11.73 55.49 0.65 -28.36 16 22 Si 0.91 23.24 29.56 -169.99 -5.02 18.21 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 26 C 0.15 3.80 6.61 -8.39 -0.06 3.75 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.81 6.42 -51.93 -0.33 0.47 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.09 1.15 5.78 -51.93 -0.30 0.85 16 31 H 0.07 0.90 7.90 -51.92 -0.41 0.49 16 32 H 0.17 2.51 8.06 -52.49 -0.42 2.08 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.41 8.14 -51.94 -0.42 -0.02 16 36 H 0.11 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.11 2.05 7.94 -51.93 -0.41 1.64 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.04 1.10 6.48 -51.93 -0.34 0.76 16 42 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.07 2.05 5.21 -51.93 -0.27 1.78 16 44 H 0.05 1.54 7.47 -51.93 -0.39 1.15 16 LS Contribution 351.96 15.07 5.30 5.30 Total: -1.00 -37.43 351.96 -8.08 -45.50 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -6.22 Total: -1.87 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: -1.48 Total: 11.95 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: -0.51 Total: -64.43 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.15 Total: -14.67 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.21 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -37.43 -8.08 -45.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950839094.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.858 kcal (2) G-P(sol) polarization free energy of solvation -37.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds