Wall clock time and date at job start Tue Mar 31 2020 13:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47181 * 2 1 4 4 C 1.35481 * 116.99892 * 180.02562 * 3 2 1 5 5 C 1.39635 * 119.97164 * 180.02562 * 4 3 2 6 6 N 1.31528 * 120.03691 * 180.02562 * 5 4 3 7 7 C 1.33207 * 119.99071 * 359.97438 * 6 5 4 8 8 C 1.47907 * 120.02906 * 179.97438 * 7 6 5 9 9 O 1.21549 * 120.00439 * 186.04778 * 8 7 6 10 10 N 1.34781 * 119.99540 * 6.03849 * 8 7 6 11 11 C 1.46496 * 120.00216 * 4.82713 * 10 8 7 12 12 C 1.53005 * 109.46903 * 274.86634 * 11 10 8 13 13 C 1.46497 * 119.99595 * 184.81794 * 10 8 7 14 14 C 1.53497 * 114.20758 * 52.51525 * 13 10 8 15 15 N 1.47071 * 87.98631 * 220.14221 * 14 13 10 16 16 C 1.36932 * 136.06038 * 207.08051 * 15 14 13 17 17 H 1.08002 * 120.00087 * 5.12337 * 16 15 14 18 18 C 1.38804 * 120.00206 * 185.12509 * 16 15 14 19 19 N 1.31621 * 120.00026 * 5.10172 * 18 16 15 20 20 Si 1.86800 * 120.00227 * 185.10702 * 18 16 15 21 21 H 1.48500 * 109.47073 * 264.99845 * 20 18 16 22 22 H 1.48494 * 109.47087 * 24.99788 * 20 18 16 23 23 H 1.48502 * 109.47470 * 144.99688 * 20 18 16 24 24 C 1.47073 * 87.88351 * 27.34143 * 15 14 13 25 25 C 1.39395 * 119.95295 * 0.25510 * 7 6 5 26 26 N 1.32078 * 119.95430 * 359.50234 * 25 7 6 27 27 H 1.09006 * 109.47064 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46961 * 299.99646 * 1 2 3 29 29 H 1.08994 * 109.47328 * 59.99975 * 1 2 3 30 30 H 1.09001 * 109.46961 * 240.00353 * 2 1 3 31 31 H 1.08995 * 109.47207 * 120.00559 * 2 1 3 32 32 H 1.08002 * 119.98177 * 359.97438 * 5 4 3 33 33 H 1.09007 * 109.47262 * 34.85918 * 11 10 8 34 34 H 1.08991 * 109.47310 * 154.86696 * 11 10 8 35 35 H 1.09001 * 109.47283 * 59.99384 * 12 11 10 36 36 H 1.09000 * 109.46839 * 180.02562 * 12 11 10 37 37 H 1.09007 * 109.46576 * 299.99704 * 12 11 10 38 38 H 1.09000 * 113.28180 * 185.57942 * 13 10 8 39 39 H 1.09002 * 113.47074 * 105.36264 * 14 13 10 40 40 H 1.09006 * 113.46581 * 334.92203 * 14 13 10 41 41 H 0.97002 * 119.99945 * 180.02562 * 19 18 16 42 42 H 1.09000 * 113.47036 * 87.43373 * 24 15 14 43 43 H 1.08995 * 113.46670 * 217.88138 * 24 15 14 44 44 H 1.08000 * 120.02329 * 179.72761 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3495 1.5247 -0.0005 5 6 3.8826 2.8153 0.0000 6 7 5.1864 2.9891 -0.0011 7 6 5.9988 1.9335 -0.0021 8 6 7.4650 2.1279 -0.0038 9 8 8.2051 1.1702 -0.1156 10 7 7.9805 3.3672 0.1184 11 6 7.0944 4.5088 0.3589 12 6 6.5559 5.0265 -0.9764 13 6 9.4271 3.5727 0.0110 14 6 10.0551 2.9762 -1.2563 15 7 11.1935 2.5496 -0.4287 16 6 12.5244 2.3022 -0.6348 17 1 12.9672 2.4993 -1.6000 18 6 13.3046 1.7981 0.3966 19 7 12.7466 1.4633 1.5407 20 14 15.1465 1.5948 0.1611 21 1 15.4403 0.2032 -0.2660 22 1 15.6200 2.5424 -0.8796 23 1 15.8435 1.8772 1.4416 24 6 10.2720 2.4991 0.7164 25 6 5.4662 0.6453 -0.0074 26 7 4.1567 0.4731 -0.0015 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.2240 3.6713 0.0004 33 1 6.2621 4.1961 0.9896 34 1 7.6509 5.3018 0.8583 35 1 5.9995 4.2334 -1.4759 36 1 5.8970 5.8762 -0.7975 37 1 7.3883 5.3392 -1.6070 38 1 9.7336 4.5972 0.2220 39 1 10.3182 3.7245 -2.0039 40 1 9.4858 2.1452 -1.6730 41 1 13.2918 1.1114 2.2616 42 1 9.7599 1.5424 0.8197 43 1 10.7200 2.8410 1.6494 44 1 6.1238 -0.2113 -0.0127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957465840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:11 Heat of formation + Delta-G solvation = 73.646612 kcal Electronic energy + Delta-G solvation = -27191.817508 eV Core-core repulsion = 23341.813612 eV Total energy + Delta-G solvation = -3850.003896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.71138 -40.03410 -38.77498 -36.89620 -35.67004 -34.11796 -32.56301 -32.01814 -30.61131 -29.95089 -27.39496 -25.57476 -25.09275 -24.41172 -23.28102 -23.16564 -22.90320 -20.46938 -19.28530 -18.92578 -17.93709 -17.04503 -16.82910 -16.51346 -15.62803 -15.36446 -15.25194 -14.94948 -14.65022 -14.44456 -14.34810 -13.88495 -13.70044 -13.33817 -13.14209 -13.05109 -12.70539 -12.33419 -12.19334 -12.10688 -11.76779 -11.65757 -11.52740 -11.27577 -11.19969 -11.13194 -10.84166 -10.73331 -10.48293 -10.04346 -9.98048 -9.77341 -9.28289 -9.14392 -8.98319 -8.53989 -7.99508 -6.70467 -5.66852 -2.96767 0.32820 0.76258 2.44371 2.81986 3.17141 3.45741 3.50075 3.52478 3.66588 3.74574 3.87483 4.19190 4.55691 4.57558 4.59489 4.67747 4.91776 4.97883 5.16580 5.25256 5.31145 5.38898 5.41213 5.48954 5.57226 5.62291 5.67402 5.72191 5.79079 5.93147 5.98751 6.14101 6.43221 6.47499 6.59684 6.65742 6.70761 6.83479 7.01220 7.32658 7.36636 7.63250 7.71094 7.86385 8.07399 8.49315 9.14315 9.80453 10.77384 11.51744 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026602 B = 0.002765 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.297109 B =10123.285038 C =10847.670850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.297 6.297 4 C 0.291 3.709 5 C 0.033 3.967 6 N -0.363 5.363 7 C -0.012 4.012 8 C 0.568 3.432 9 O -0.504 6.504 10 N -0.578 5.578 11 C 0.111 3.889 12 C -0.153 4.153 13 C 0.080 3.920 14 C 0.112 3.888 15 N -0.603 5.603 16 C -0.213 4.213 17 H 0.081 0.919 18 C -0.009 4.009 19 N -0.917 5.917 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.280 1.280 23 H -0.290 1.290 24 C 0.146 3.854 25 C 0.158 3.842 26 N -0.503 5.503 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.181 0.819 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.110 0.890 39 H 0.034 0.966 40 H 0.043 0.957 41 H 0.252 0.748 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.882 3.532 -1.997 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.202 6.202 4 C 0.107 3.893 5 C -0.133 4.133 6 N -0.081 5.081 7 C -0.150 4.150 8 C 0.353 3.647 9 O -0.379 6.379 10 N -0.310 5.310 11 C -0.012 4.012 12 C -0.211 4.211 13 C -0.023 4.023 14 C -0.016 4.016 15 N -0.329 5.329 16 C -0.341 4.341 17 H 0.098 0.902 18 C -0.206 4.206 19 N -0.564 5.564 20 Si 0.742 3.258 21 H -0.217 1.217 22 H -0.206 1.206 23 H -0.217 1.217 24 C 0.019 3.981 25 C -0.001 4.001 26 N -0.232 5.232 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.198 0.802 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.128 0.872 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -25.310 3.079 -1.958 25.571 hybrid contribution 0.863 -0.429 -0.129 0.973 sum -24.446 2.650 -2.088 24.678 Atomic orbital electron populations 1.21826 0.92603 1.03152 1.03443 1.22752 0.95093 0.80567 1.03004 1.86229 1.15978 1.31348 1.86626 1.21296 0.85104 0.91847 0.91018 1.23112 0.92153 0.94995 1.03030 1.69104 1.02570 1.31454 1.04997 1.22253 0.96102 0.90918 1.05768 1.17497 0.84904 0.83830 0.78453 1.90870 1.58076 1.40188 1.48776 1.47857 1.07856 1.06267 1.69002 1.21790 0.93591 0.87936 0.97919 1.22088 1.00539 1.00674 0.97831 1.23961 0.75874 1.01073 1.01406 1.22708 0.89256 0.96254 0.93344 1.45345 1.02414 1.79197 1.05913 1.18903 0.80979 1.36601 0.97582 0.90160 1.24825 0.98212 1.00925 0.96618 1.69876 1.33976 1.48330 1.04169 0.86099 0.84981 0.77795 0.76882 1.21684 1.20578 1.21682 1.22739 0.87021 0.95770 0.92525 1.23569 0.89677 0.98025 0.88847 1.68257 1.05374 1.32509 1.17098 0.90080 0.91499 0.91519 0.91210 0.91187 0.80231 0.88945 0.91250 0.92132 0.92316 0.93250 0.87247 0.94769 0.93908 0.93762 0.91096 0.92732 0.79574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.28 37.16 0.38 -0.37 16 2 C 0.06 0.45 6.04 37.16 0.22 0.68 16 3 O -0.30 -2.73 10.12 -18.14 -0.18 -2.92 16 4 C 0.29 3.06 7.50 -16.71 -0.13 2.93 16 5 C 0.03 0.32 11.18 -17.16 -0.19 0.12 16 6 N -0.36 -4.20 4.11 -9.48 -0.04 -4.24 16 7 C -0.01 -0.16 6.49 -82.88 -0.54 -0.70 16 8 C 0.57 9.92 7.08 -12.30 -0.09 9.83 16 9 O -0.50 -10.77 11.92 5.32 0.06 -10.71 16 10 N -0.58 -9.59 2.77 -166.81 -0.46 -10.05 16 11 C 0.11 1.38 5.72 -4.04 -0.02 1.36 16 12 C -0.15 -1.70 9.50 37.16 0.35 -1.34 16 13 C 0.08 1.60 4.80 -67.67 -0.32 1.28 16 14 C 0.11 2.53 8.10 -8.50 -0.07 2.46 16 15 N -0.60 -16.64 3.77 -184.58 -0.70 -17.34 16 16 C -0.21 -6.30 10.74 -15.06 -0.16 -6.46 16 17 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 19 N -0.92 -28.61 11.72 55.49 0.65 -27.96 16 20 Si 0.91 22.93 29.56 -169.99 -5.02 17.91 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 C 0.15 3.71 6.61 -8.36 -0.06 3.65 16 25 C 0.16 2.04 10.76 -17.02 -0.18 1.86 16 26 N -0.50 -5.99 9.37 -12.76 -0.12 -6.11 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 31 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 32 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.09 1.10 5.67 -51.93 -0.29 0.80 16 34 H 0.07 0.80 7.90 -51.93 -0.41 0.39 16 35 H 0.06 0.73 6.23 -51.93 -0.32 0.40 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.11 2.01 7.93 -51.93 -0.41 1.60 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.04 1.02 6.48 -51.93 -0.34 0.69 16 41 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.07 1.96 5.21 -51.93 -0.27 1.69 16 43 H 0.05 1.51 7.47 -51.93 -0.39 1.12 16 44 H 0.19 2.34 7.65 -52.49 -0.40 1.94 16 LS Contribution 358.78 15.07 5.41 5.41 Total: -1.00 -34.89 358.78 -7.48 -42.38 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -6.18 Total: -1.30 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: -0.90 Total: 14.93 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: -0.67 Total: -65.70 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.12 Total: -13.62 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.89 -7.48 -42.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957465840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.023 kcal (2) G-P(sol) polarization free energy of solvation -34.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds