Wall clock time and date at job start Tue Mar 31 2020 13:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.46938 * 2 1 4 4 C 1.35483 * 116.99693 * 180.02562 * 3 2 1 5 5 C 1.39640 * 119.97502 * 180.02562 * 4 3 2 6 6 N 1.31525 * 120.04179 * 180.02562 * 5 4 3 7 7 C 1.33216 * 119.98566 * 359.97438 * 6 5 4 8 8 C 1.47905 * 120.02488 * 179.97438 * 7 6 5 9 9 O 1.21542 * 120.00347 * 179.97438 * 8 7 6 10 10 N 1.34783 * 119.99764 * 0.02562 * 8 7 6 11 11 C 1.47426 * 125.64979 * 0.02562 * 10 8 7 12 12 C 1.54901 * 104.83400 * 155.83628 * 11 10 8 13 13 C 1.55157 * 101.58260 * 37.01041 * 12 11 10 14 14 H 1.08996 * 110.72695 * 82.85914 * 13 12 11 15 15 N 1.46499 * 110.72303 * 206.13825 * 13 12 11 16 16 C 1.36943 * 119.99777 * 273.54475 * 15 13 12 17 17 H 1.07998 * 119.99804 * 359.97438 * 16 15 13 18 18 C 1.38812 * 119.99784 * 179.97438 * 16 15 13 19 19 N 1.31619 * 120.00339 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99463 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47242 * 90.00473 * 20 18 16 22 22 H 1.48509 * 109.46791 * 210.00207 * 20 18 16 23 23 H 1.48498 * 109.47461 * 329.99786 * 20 18 16 24 24 C 1.47019 * 125.64644 * 179.97438 * 10 8 7 25 25 H 1.09000 * 109.88042 * 61.67850 * 24 10 8 26 26 C 1.53001 * 109.88261 * 300.51020 * 24 10 8 27 27 C 1.39386 * 119.95592 * 0.25616 * 7 6 5 28 28 N 1.32085 * 119.95784 * 359.50366 * 27 7 6 29 29 H 1.09001 * 109.46956 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46957 * 299.99974 * 1 2 3 31 31 H 1.08994 * 109.47007 * 60.00100 * 1 2 3 32 32 H 1.08998 * 109.46957 * 240.00026 * 2 1 3 33 33 H 1.09003 * 109.47057 * 119.99661 * 2 1 3 34 34 H 1.08006 * 119.97785 * 359.97144 * 5 4 3 35 35 H 1.09004 * 110.36498 * 36.99594 * 11 10 8 36 36 H 1.08999 * 110.36381 * 274.67856 * 11 10 8 37 37 H 1.09002 * 111.00715 * 278.93203 * 12 11 10 38 38 H 1.09002 * 111.03940 * 155.09485 * 12 11 10 39 39 H 0.97004 * 120.00550 * 93.53918 * 15 13 12 40 40 H 0.96995 * 119.99745 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.47416 * 302.18643 * 26 24 10 42 42 H 1.08993 * 109.47099 * 62.19782 * 26 24 10 43 43 H 1.09007 * 109.46548 * 182.19195 * 26 24 10 44 44 H 1.08001 * 120.02333 * 179.72694 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3495 1.5248 -0.0005 5 6 3.8827 2.8154 0.0000 6 7 5.1864 2.9892 -0.0011 7 6 5.9988 1.9334 -0.0021 8 6 7.4650 2.1279 -0.0038 9 8 8.2059 1.1644 -0.0043 10 7 7.9796 3.3737 -0.0038 11 6 7.2004 4.6252 -0.0017 12 6 8.1515 5.6835 0.6103 13 6 9.5204 5.2486 0.0235 14 1 9.6517 5.6446 -0.9835 15 7 10.6173 5.6740 0.8964 16 6 11.1540 6.9266 0.7607 17 1 10.7688 7.6006 0.0099 18 6 12.1930 7.3298 1.5882 19 7 12.6628 6.5081 2.5028 20 14 12.9254 9.0382 1.4025 21 1 12.1917 9.9889 2.2759 22 1 14.3571 9.0084 1.7962 23 1 12.8101 9.4753 -0.0120 24 6 9.4109 3.7095 -0.0049 25 1 9.8821 3.3210 -0.9078 26 6 10.0854 3.1168 1.2339 27 6 5.4662 0.6454 -0.0074 28 7 4.1567 0.4731 -0.0016 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.2241 3.6714 0.0003 35 1 6.3080 4.5154 0.6146 36 1 6.9274 4.9038 -1.0195 37 1 8.1558 5.6222 1.6986 38 1 7.8854 6.6872 0.2787 39 1 10.9635 5.0685 1.5705 40 1 13.3891 6.7899 3.0807 41 1 9.5954 3.4957 2.1308 42 1 10.0042 2.0302 1.2069 43 1 11.1373 3.4024 1.2465 44 1 6.1239 -0.2113 -0.0127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987615350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:44 Heat of formation + Delta-G solvation = 10.063378 kcal Electronic energy + Delta-G solvation = -26722.720398 eV Core-core repulsion = 22869.959326 eV Total energy + Delta-G solvation = -3852.761072 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.75082 -39.96437 -38.82954 -37.42417 -34.77764 -33.99347 -32.66728 -31.68565 -30.76875 -30.53094 -28.78857 -25.74777 -25.17519 -25.00179 -23.41861 -23.18654 -22.41004 -20.36857 -19.10126 -18.90722 -18.15203 -17.53514 -16.99812 -16.93732 -15.94113 -15.71818 -15.21297 -14.93943 -14.87893 -14.48967 -14.27918 -13.87776 -13.64057 -13.27530 -13.10455 -13.09259 -12.81964 -12.52576 -12.33345 -12.04196 -11.98448 -11.68552 -11.63234 -11.28838 -11.21807 -11.14161 -10.93887 -10.77132 -10.40541 -10.32539 -10.10415 -9.89189 -9.63340 -9.39234 -9.12834 -8.90696 -8.36046 -6.99785 -5.79945 -3.09425 0.19965 0.66351 2.34901 2.65759 3.00621 3.42444 3.47790 3.49448 3.54492 3.62471 3.77909 4.08490 4.51236 4.51844 4.56726 4.57506 4.81861 4.88848 5.09331 5.18469 5.19586 5.28262 5.33204 5.46948 5.52608 5.62576 5.65084 5.68216 5.80304 5.93933 6.13235 6.22711 6.27570 6.41101 6.56474 6.58334 6.64752 6.71464 6.74799 6.84396 7.02456 7.25508 7.68289 7.71318 8.20762 8.38776 9.50280 10.05640 10.40664 11.42599 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032210 B = 0.002440 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.094581 B =11473.198380 C =12063.538107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.295 6.295 4 C 0.293 3.707 5 C 0.043 3.957 6 N -0.369 5.369 7 C -0.008 4.008 8 C 0.588 3.412 9 O -0.537 6.537 10 N -0.586 5.586 11 C 0.100 3.900 12 C -0.157 4.157 13 C 0.173 3.827 14 H 0.063 0.937 15 N -0.718 5.718 16 C -0.242 4.242 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.909 3.091 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C 0.127 3.873 25 H 0.074 0.926 26 C -0.159 4.159 27 C 0.156 3.844 28 N -0.502 5.502 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.184 0.816 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.391 0.609 40 H 0.256 0.744 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.396 -11.795 -5.753 26.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.200 6.200 4 C 0.109 3.891 5 C -0.124 4.124 6 N -0.086 5.086 7 C -0.147 4.147 8 C 0.373 3.627 9 O -0.415 6.415 10 N -0.317 5.317 11 C -0.023 4.023 12 C -0.198 4.198 13 C 0.061 3.939 14 H 0.081 0.919 15 N -0.362 5.362 16 C -0.373 4.373 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.024 3.976 25 H 0.092 0.908 26 C -0.217 4.217 27 C -0.003 4.003 28 N -0.232 5.232 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.200 0.800 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.229 0.771 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -23.126 -12.045 -5.790 26.710 hybrid contribution 0.410 0.594 0.201 0.750 sum -22.716 -11.450 -5.589 26.045 Atomic orbital electron populations 1.21831 0.92504 1.03191 1.03548 1.22769 0.95200 0.80478 1.02966 1.86244 1.15816 1.31425 1.86481 1.21301 0.85169 0.91790 0.90833 1.23113 0.91888 0.95137 1.02261 1.68759 1.02847 1.31946 1.05059 1.22039 0.95614 0.90982 1.06047 1.17045 0.85101 0.82549 0.77956 1.90787 1.59311 1.39543 1.51879 1.48424 1.08598 1.05216 1.69463 1.22685 0.95516 0.82805 1.01250 1.23600 0.97159 0.97630 1.01409 1.21194 0.88518 0.89109 0.95041 0.91900 1.42683 1.37774 1.15735 1.39959 1.19238 1.12540 0.90892 1.14638 0.91056 1.24757 0.99194 0.98299 0.98571 1.69658 1.29620 1.35396 1.23269 0.86172 0.78336 0.84041 0.77497 1.21727 1.21800 1.20734 1.21916 0.79170 0.97314 0.99185 0.90779 1.22015 1.01926 1.00804 0.96995 1.23518 0.89767 0.97776 0.89223 1.68258 1.05292 1.32529 1.17076 0.90038 0.91431 0.91458 0.91194 0.91176 0.79956 0.88736 0.91802 0.90843 0.90640 0.77104 0.93414 0.92458 0.92053 0.90019 0.79623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 10.28 37.16 0.38 -0.30 16 2 C 0.06 0.41 6.04 37.16 0.22 0.64 16 3 O -0.30 -2.59 10.12 -18.14 -0.18 -2.77 16 4 C 0.29 2.94 7.50 -16.71 -0.13 2.82 16 5 C 0.04 0.41 11.18 -17.16 -0.19 0.22 16 6 N -0.37 -4.40 6.76 -9.48 -0.06 -4.46 16 7 C -0.01 -0.11 6.71 -82.88 -0.56 -0.66 16 8 C 0.59 9.38 7.62 -12.30 -0.09 9.28 16 9 O -0.54 -9.68 15.23 5.33 0.08 -9.60 16 10 N -0.59 -9.46 3.08 -164.10 -0.51 -9.97 16 11 C 0.10 1.44 5.94 -2.53 -0.02 1.43 16 12 C -0.16 -2.65 6.77 -24.59 -0.17 -2.82 16 13 C 0.17 3.36 3.46 -66.09 -0.23 3.13 16 14 H 0.06 1.22 8.12 -51.93 -0.42 0.79 16 15 N -0.72 -17.40 5.02 -51.65 -0.26 -17.66 16 16 C -0.24 -6.50 9.98 -15.06 -0.15 -6.65 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 20 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.13 2.29 3.48 -66.95 -0.23 2.06 16 25 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 26 C -0.16 -3.01 7.95 37.16 0.30 -2.71 16 27 C 0.16 1.81 10.76 -17.02 -0.18 1.63 16 28 N -0.50 -5.49 9.37 -12.76 -0.12 -5.61 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 33 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 34 H 0.18 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.09 1.28 5.89 -51.93 -0.31 0.98 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.39 10.00 4.92 -40.82 -0.20 9.80 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 41 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 42 H 0.06 1.14 6.76 -51.93 -0.35 0.79 16 43 H 0.08 1.67 6.67 -51.92 -0.35 1.32 16 44 H 0.19 1.93 7.64 -52.49 -0.40 1.53 16 LS Contribution 362.18 15.07 5.46 5.46 Total: -1.00 -31.35 362.18 -7.25 -38.59 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.22 Total: 8.30 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -1.14 Total: 7.63 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: -0.22 Total: -64.59 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.10 Total: -12.37 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.35 -7.25 -38.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987615350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.657 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds