Wall clock time and date at job start Tue Mar 31 2020 13:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47332 * 2 1 4 4 C 1.35481 * 117.00318 * 180.02562 * 3 2 1 5 5 C 1.39629 * 119.97796 * 180.02562 * 4 3 2 6 6 N 1.31536 * 120.03893 * 179.74380 * 5 4 3 7 7 C 1.33206 * 119.98868 * 0.50531 * 6 5 4 8 8 C 1.47904 * 120.02282 * 179.74090 * 7 6 5 9 9 O 1.21550 * 119.99660 * 179.72920 * 8 7 6 10 10 N 1.34777 * 120.00221 * 359.73083 * 8 7 6 11 11 C 1.47429 * 125.64684 * 0.04280 * 10 8 7 12 12 C 1.54906 * 104.83044 * 204.09161 * 11 10 8 13 13 C 1.55150 * 101.58255 * 322.98719 * 12 11 10 14 14 H 1.09001 * 110.87634 * 277.07295 * 13 12 11 15 15 N 1.46505 * 110.72044 * 153.86571 * 13 12 11 16 16 C 1.36931 * 119.99788 * 91.47904 * 15 13 12 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 13 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48508 * 109.46872 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 119.99997 * 20 18 16 23 23 H 1.48498 * 109.47018 * 240.00044 * 20 18 16 24 24 C 1.47019 * 125.64806 * 179.97438 * 10 8 7 25 25 H 1.08993 * 110.01157 * 298.46695 * 24 10 8 26 26 C 1.53000 * 109.88069 * 59.56206 * 24 10 8 27 27 C 1.39394 * 119.95058 * 359.47184 * 7 6 5 28 28 N 1.32079 * 119.96260 * 0.27716 * 27 7 6 29 29 H 1.09001 * 109.47381 * 60.00088 * 1 2 3 30 30 H 1.09000 * 109.47281 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47432 * 299.99890 * 1 2 3 32 32 H 1.09000 * 109.47426 * 240.00035 * 2 1 3 33 33 H 1.09004 * 109.46945 * 120.00174 * 2 1 3 34 34 H 1.08000 * 119.98246 * 0.02562 * 5 4 3 35 35 H 1.09004 * 110.36263 * 322.92750 * 11 10 8 36 36 H 1.08994 * 110.36854 * 85.13808 * 11 10 8 37 37 H 1.09000 * 111.00550 * 204.91393 * 12 11 10 38 38 H 1.09000 * 111.00625 * 81.06327 * 12 11 10 39 39 H 0.97000 * 119.99792 * 271.47699 * 15 13 12 40 40 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.46741 * 177.80599 * 26 24 10 42 42 H 1.08992 * 109.46874 * 297.80799 * 26 24 10 43 43 H 1.08999 * 109.46961 * 57.81039 * 26 24 10 44 44 H 1.08000 * 120.01422 * 180.29326 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3495 1.5248 -0.0005 5 6 3.8826 2.8152 0.0000 6 7 5.1864 2.9890 0.0045 7 6 5.9988 1.9334 -0.0015 8 6 7.4650 2.1279 -0.0022 9 8 8.2059 1.1643 -0.0027 10 7 7.9796 3.3736 -0.0021 11 6 7.2003 4.6251 -0.0006 12 6 8.1505 5.6845 -0.6124 13 6 9.5203 5.2486 -0.0287 14 1 9.6564 5.6426 0.9785 15 7 10.6157 5.6757 -0.9028 16 6 11.2214 6.8868 -0.6996 17 1 10.8918 7.5272 0.1053 18 6 12.2631 7.2889 -1.5242 19 7 12.6651 6.5084 -2.5047 20 14 13.0945 8.9378 -1.2422 21 1 12.4608 9.6202 -0.0854 22 1 14.5368 8.7234 -0.9617 23 1 12.9462 9.7809 -2.4556 24 6 9.4109 3.7094 -0.0022 25 1 9.8856 3.3193 0.8980 26 6 10.0839 3.1187 -1.2428 27 6 5.4661 0.6452 -0.0015 28 7 4.1566 0.4730 -0.0011 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2241 3.6713 0.0012 35 1 6.3070 4.5164 -0.6157 36 1 6.9275 4.9008 1.0180 37 1 7.8846 6.6874 -0.2781 38 1 8.1528 5.6252 -1.7008 39 1 10.9120 5.1004 -1.6254 40 1 13.3929 6.7895 -3.0811 41 1 11.1357 3.4043 -1.2562 42 1 10.0026 2.0321 -1.2175 43 1 9.5927 3.4990 -2.1384 44 1 6.1239 -0.2114 -0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987615352.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:50 Heat of formation + Delta-G solvation = 9.319028 kcal Electronic energy + Delta-G solvation = -26716.729355 eV Core-core repulsion = 22863.936005 eV Total energy + Delta-G solvation = -3852.793350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.74970 -39.95871 -38.82724 -37.41775 -34.77681 -33.99749 -32.66730 -31.68562 -30.76670 -30.52325 -28.79739 -25.74762 -25.16476 -25.00259 -23.42334 -23.18342 -22.40154 -20.37742 -19.10125 -18.90773 -18.15036 -17.56788 -16.98110 -16.93604 -15.93704 -15.71505 -15.21179 -14.93678 -14.87518 -14.48818 -14.27705 -13.87410 -13.63326 -13.27108 -13.10468 -13.09292 -12.81558 -12.50872 -12.31355 -12.06389 -11.98376 -11.68134 -11.63043 -11.30696 -11.21728 -11.14129 -10.95284 -10.76524 -10.41434 -10.31832 -10.08068 -9.89306 -9.64388 -9.39359 -9.12727 -8.91963 -8.35559 -7.00583 -5.80691 -3.10102 0.20113 0.66409 2.34980 2.66046 3.01097 3.41836 3.47612 3.49847 3.54679 3.62535 3.78087 4.08611 4.51228 4.51938 4.56455 4.57590 4.81973 4.88894 5.09410 5.18472 5.19618 5.28601 5.33211 5.47179 5.52776 5.62755 5.65451 5.68255 5.80926 5.94745 6.13294 6.23423 6.27870 6.40791 6.56547 6.58424 6.64617 6.71687 6.75021 6.85247 7.01666 7.25630 7.68126 7.71873 8.21241 8.37854 9.49540 10.04819 10.39926 11.41840 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033181 B = 0.002427 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.655221 B =11535.831814 C =12099.602060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.295 6.295 4 C 0.293 3.707 5 C 0.043 3.957 6 N -0.369 5.369 7 C -0.008 4.008 8 C 0.587 3.413 9 O -0.538 6.538 10 N -0.585 5.585 11 C 0.101 3.899 12 C -0.157 4.157 13 C 0.173 3.827 14 H 0.066 0.934 15 N -0.717 5.717 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.125 3.875 25 H 0.074 0.926 26 C -0.159 4.159 27 C 0.156 3.844 28 N -0.502 5.502 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.183 0.817 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.391 0.609 40 H 0.256 0.744 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.497 -11.684 5.676 26.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.200 6.200 4 C 0.109 3.891 5 C -0.124 4.124 6 N -0.086 5.086 7 C -0.147 4.147 8 C 0.373 3.627 9 O -0.415 6.415 10 N -0.317 5.317 11 C -0.022 4.022 12 C -0.198 4.198 13 C 0.061 3.939 14 H 0.084 0.916 15 N -0.360 5.360 16 C -0.373 4.373 17 H 0.090 0.910 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C 0.022 3.978 25 H 0.092 0.908 26 C -0.217 4.217 27 C -0.003 4.003 28 N -0.232 5.232 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.200 0.800 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.228 0.772 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -23.227 -11.930 5.731 26.733 hybrid contribution 0.463 0.548 -0.169 0.737 sum -22.764 -11.381 5.562 26.052 Atomic orbital electron populations 1.21829 0.92505 1.03192 1.03548 1.22767 0.95197 0.80480 1.02966 1.86242 1.15820 1.31426 1.86484 1.21298 0.85167 0.91791 0.90844 1.23109 0.91886 0.95137 1.02279 1.68760 1.02845 1.31952 1.05061 1.22044 0.95625 0.90978 1.06029 1.17049 0.85093 0.82567 0.77970 1.90789 1.59318 1.39538 1.51889 1.48418 1.08637 1.05191 1.69435 1.22676 0.95487 0.82814 1.01249 1.23602 0.97218 0.97649 1.01370 1.21200 0.88445 0.89112 0.95118 0.91589 1.42667 1.37318 1.20649 1.35330 1.19302 1.11654 0.94498 1.11890 0.90973 1.24762 0.99230 0.98670 0.98171 1.69670 1.30788 1.37141 1.20290 0.86103 0.79241 0.83457 0.77266 1.20514 1.21868 1.21894 1.21974 0.79086 0.97546 0.99187 0.90803 1.22013 1.02015 1.00765 0.96919 1.23519 0.89767 0.97782 0.89221 1.68259 1.05293 1.32524 1.17075 0.91437 0.90039 0.91454 0.91176 0.91198 0.79960 0.88785 0.91795 0.90615 0.90884 0.77152 0.93457 0.89965 0.92113 0.92569 0.79626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 10.28 37.16 0.38 -0.30 16 2 C 0.06 0.41 6.04 37.16 0.22 0.64 16 3 O -0.30 -2.59 10.12 -18.13 -0.18 -2.77 16 4 C 0.29 2.94 7.50 -16.71 -0.13 2.82 16 5 C 0.04 0.41 11.18 -17.16 -0.19 0.22 16 6 N -0.37 -4.39 6.76 -9.49 -0.06 -4.46 16 7 C -0.01 -0.10 6.71 -82.88 -0.56 -0.66 16 8 C 0.59 9.39 7.62 -12.30 -0.09 9.29 16 9 O -0.54 -9.71 15.24 5.32 0.08 -9.63 16 10 N -0.59 -9.46 3.08 -164.10 -0.51 -9.96 16 11 C 0.10 1.44 5.94 -2.53 -0.02 1.43 16 12 C -0.16 -2.64 6.77 -24.59 -0.17 -2.81 16 13 C 0.17 3.36 3.49 -66.09 -0.23 3.13 16 14 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 15 N -0.72 -17.33 4.94 -51.65 -0.25 -17.59 16 16 C -0.24 -6.51 9.96 -15.06 -0.15 -6.66 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 20 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 C 0.13 2.26 3.48 -66.95 -0.23 2.02 16 25 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 26 C -0.16 -3.01 7.93 37.16 0.29 -2.71 16 27 C 0.16 1.81 10.76 -17.01 -0.18 1.63 16 28 N -0.50 -5.49 9.37 -12.76 -0.12 -5.61 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 33 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 34 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.09 1.27 5.90 -51.93 -0.31 0.96 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.39 10.00 5.06 -40.82 -0.21 9.79 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.08 1.69 6.77 -51.93 -0.35 1.34 16 42 H 0.06 1.13 6.76 -51.93 -0.35 0.78 16 43 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 44 H 0.19 1.93 7.64 -52.49 -0.40 1.53 16 LS Contribution 362.24 15.07 5.46 5.46 Total: -1.00 -31.32 362.24 -7.25 -38.57 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.22 Total: 8.28 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -1.14 Total: 7.60 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -0.22 Total: -64.48 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.10 Total: -12.40 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.32 -7.25 -38.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987615352.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.893 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds