Wall clock time and date at job start Tue Mar 31 2020 13:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47072 * 2 1 4 4 C 1.35489 * 116.99637 * 179.97438 * 3 2 1 5 5 C 1.39634 * 119.96994 * 179.97438 * 4 3 2 6 6 N 1.31538 * 120.03284 * 180.02562 * 5 4 3 7 7 C 1.33207 * 119.99346 * 359.97438 * 6 5 4 8 8 C 1.47896 * 120.02551 * 180.02562 * 7 6 5 9 9 O 1.21551 * 120.00322 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00429 * 359.97438 * 8 7 6 11 11 C 1.47422 * 125.64361 * 359.94769 * 10 8 7 12 12 C 1.54906 * 104.83284 * 204.17309 * 11 10 8 13 13 H 1.09000 * 111.03945 * 204.89940 * 12 11 10 14 14 N 1.46504 * 111.00538 * 81.06220 * 12 11 10 15 15 C 1.36943 * 119.99781 * 92.80655 * 14 12 11 16 16 H 1.08002 * 119.99788 * 359.97438 * 15 14 12 17 17 C 1.38811 * 119.99622 * 180.27904 * 15 14 12 18 18 N 1.31614 * 120.00467 * 359.72375 * 17 15 14 19 19 Si 1.86801 * 119.99700 * 179.72266 * 17 15 14 20 20 H 1.48496 * 109.47031 * 59.99836 * 19 17 15 21 21 H 1.48497 * 109.47267 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47169 * 300.00118 * 19 17 15 23 23 C 1.55153 * 101.58297 * 322.99022 * 12 11 10 24 24 C 1.47023 * 125.65309 * 180.02562 * 10 8 7 25 25 H 1.08997 * 109.88266 * 59.47387 * 24 10 8 26 26 C 1.53003 * 109.87964 * 298.31322 * 24 10 8 27 27 C 1.39394 * 119.94995 * 0.27404 * 7 6 5 28 28 N 1.32080 * 119.95781 * 359.46011 * 27 7 6 29 29 H 1.09005 * 109.46813 * 60.00318 * 1 2 3 30 30 H 1.09000 * 109.47089 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47214 * 300.00389 * 1 2 3 32 32 H 1.09002 * 109.47401 * 239.99430 * 2 1 3 33 33 H 1.09005 * 109.46813 * 119.99682 * 2 1 3 34 34 H 1.07996 * 119.98748 * 0.02562 * 5 4 3 35 35 H 1.09006 * 110.36998 * 85.33360 * 11 10 8 36 36 H 1.09005 * 110.37180 * 323.01170 * 11 10 8 37 37 H 0.97000 * 120.00410 * 272.80980 * 14 12 11 38 38 H 0.96995 * 120.00147 * 180.02562 * 18 17 15 39 39 H 1.09003 * 110.72723 * 153.86049 * 23 12 11 40 40 H 1.09000 * 110.72556 * 277.13946 * 23 12 11 41 41 H 1.09002 * 109.46729 * 302.19093 * 26 24 10 42 42 H 1.08997 * 109.47153 * 62.19314 * 26 24 10 43 43 H 1.08998 * 109.46547 * 182.19329 * 26 24 10 44 44 H 1.07996 * 120.02067 * 179.70384 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3496 1.5247 0.0005 5 6 3.8827 2.8153 0.0000 6 7 5.1865 2.9890 0.0000 7 6 5.9989 1.9334 0.0011 8 6 7.4651 2.1278 0.0016 9 8 8.2060 1.1643 0.0030 10 7 7.9797 3.3735 0.0006 11 6 7.2005 4.6249 -0.0022 12 6 8.1514 5.6828 -0.6155 13 1 7.8854 6.6868 -0.2847 14 7 8.1566 5.5992 -2.0782 15 6 7.3033 6.3797 -2.8116 16 1 6.6263 7.0566 -2.3118 17 6 7.3041 6.2962 -4.1972 18 7 8.1288 5.4708 -4.8063 19 14 6.1347 7.3553 -5.1974 20 1 6.4088 8.7889 -4.9241 21 1 6.3322 7.0809 -6.6434 22 1 4.7339 7.0384 -4.8197 23 6 9.5205 5.2484 -0.0289 24 6 9.4110 3.7094 0.0005 25 1 9.8910 3.2864 -0.8820 26 6 10.0733 3.1649 1.2678 27 6 5.4662 0.6452 -0.0037 28 7 4.1567 0.4730 0.0016 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.2242 3.6713 -0.0004 35 1 6.9279 4.9045 1.0156 36 1 6.3079 4.5148 -0.6181 37 1 8.7643 4.9909 -2.5271 38 1 8.1296 5.4128 -5.7745 39 1 10.3365 5.5643 -0.6789 40 1 9.6522 5.6453 0.9777 41 1 9.5745 3.5780 2.1445 42 1 9.9922 2.0781 1.2819 43 1 11.1250 3.4510 1.2796 44 1 6.1238 -0.2114 -0.0077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989864754.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:56 Heat of formation + Delta-G solvation = 1.677899 kcal Electronic energy + Delta-G solvation = -27301.906187 eV Core-core repulsion = 23448.781493 eV Total energy + Delta-G solvation = -3853.124694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.49467 -39.77642 -38.61222 -37.25051 -34.42397 -33.91685 -32.49502 -31.56974 -31.26846 -30.16867 -28.39289 -25.68220 -25.20003 -24.83593 -23.67876 -22.96837 -22.08009 -20.07824 -19.29561 -18.82740 -17.97266 -17.27627 -16.74115 -16.69347 -16.14645 -15.37613 -14.97521 -14.94468 -14.49137 -14.43269 -13.91243 -13.82866 -13.54030 -13.26558 -13.00252 -12.95163 -12.77888 -12.58458 -12.19794 -12.14140 -11.89176 -11.72314 -11.47399 -11.38625 -11.12686 -11.02010 -10.88145 -10.67352 -10.49559 -10.30476 -9.99977 -9.95925 -9.67883 -9.24351 -8.91275 -8.87719 -8.16548 -6.98728 -5.78624 -3.08258 0.45290 0.93995 2.57299 2.88296 3.22726 3.42401 3.47005 3.48155 3.79913 3.86214 4.05940 4.33806 4.56561 4.68051 4.69961 4.79167 5.01704 5.06716 5.16918 5.23802 5.31724 5.36055 5.43581 5.49647 5.58623 5.65151 5.68021 5.71550 5.84387 5.89593 5.97172 6.09020 6.29786 6.37964 6.44446 6.55200 6.69847 6.75129 6.79602 6.98962 7.01694 7.52253 7.67749 7.91213 8.38807 8.40937 9.50389 10.06528 10.41098 11.43480 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009503 B = 0.004443 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.665752 B = 6300.927582 C = 8537.405067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.295 6.295 4 C 0.291 3.709 5 C 0.045 3.955 6 N -0.360 5.360 7 C -0.005 4.005 8 C 0.590 3.410 9 O -0.548 6.548 10 N -0.575 5.575 11 C 0.072 3.928 12 C 0.164 3.836 13 H 0.074 0.926 14 N -0.711 5.711 15 C -0.243 4.243 16 H 0.072 0.928 17 C -0.010 4.010 18 N -0.930 5.930 19 Si 0.906 3.094 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.286 1.286 23 C -0.140 4.140 24 C 0.136 3.864 25 H 0.076 0.924 26 C -0.159 4.159 27 C 0.152 3.848 28 N -0.504 5.504 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.183 0.817 35 H 0.053 0.947 36 H 0.108 0.892 37 H 0.385 0.615 38 H 0.256 0.744 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.808 -8.212 13.876 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.200 6.200 4 C 0.107 3.893 5 C -0.121 4.121 6 N -0.077 5.077 7 C -0.144 4.144 8 C 0.377 3.623 9 O -0.427 6.427 10 N -0.305 5.305 11 C -0.054 4.054 12 C 0.052 3.948 13 H 0.092 0.908 14 N -0.351 5.351 15 C -0.374 4.374 16 H 0.090 0.910 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.737 3.263 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.179 4.179 24 C 0.034 3.966 25 H 0.094 0.906 26 C -0.217 4.217 27 C -0.007 4.007 28 N -0.233 5.233 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.200 0.800 35 H 0.072 0.928 36 H 0.126 0.874 37 H 0.219 0.781 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.760 -8.489 13.771 18.397 hybrid contribution -0.569 0.062 -0.880 1.050 sum -9.330 -8.427 12.892 18.007 Atomic orbital electron populations 1.21826 0.92637 1.03047 1.03535 1.22739 0.95101 0.80697 1.02858 1.86245 1.15923 1.31191 1.86649 1.21286 0.85045 0.91832 0.91127 1.23137 0.91980 0.95058 1.01954 1.68816 1.02748 1.31734 1.04406 1.21973 0.95646 0.90928 1.05817 1.17025 0.85215 0.82476 0.77610 1.90749 1.59473 1.39728 1.52760 1.48243 1.07908 1.05530 1.68852 1.23725 0.97823 0.83646 1.00213 1.21426 0.91276 0.95993 0.86129 0.90834 1.42317 1.45546 1.48646 0.98597 1.19200 1.13612 1.15949 0.88656 0.90996 1.24743 0.99587 0.99695 0.96586 1.69653 1.39811 1.39824 1.08495 0.86293 0.80632 0.80020 0.79368 1.21175 1.21777 1.21276 1.23099 1.00368 0.93000 1.01418 1.21568 0.80898 0.95837 0.98335 0.90550 1.22134 1.00152 1.02348 0.97102 1.23454 0.89772 0.97698 0.89742 1.68212 1.05281 1.32541 1.17258 0.91414 0.90158 0.91520 0.91231 0.91329 0.80029 0.92847 0.87434 0.78124 0.93431 0.89773 0.90786 0.92845 0.91565 0.91880 0.79843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.06 0.56 6.04 37.16 0.22 0.78 16 3 O -0.30 -3.43 10.12 -18.16 -0.18 -3.61 16 4 C 0.29 3.84 7.50 -16.71 -0.13 3.72 16 5 C 0.05 0.61 11.18 -17.16 -0.19 0.42 16 6 N -0.36 -5.72 6.76 -9.49 -0.06 -5.79 16 7 C 0.00 -0.08 6.71 -82.89 -0.56 -0.64 16 8 C 0.59 10.83 7.63 -12.31 -0.09 10.74 16 9 O -0.55 -10.77 15.38 5.32 0.08 -10.68 16 10 N -0.58 -10.27 3.06 -164.10 -0.50 -10.77 16 11 C 0.07 1.26 5.64 -2.53 -0.01 1.25 16 12 C 0.16 3.07 3.72 -65.78 -0.24 2.83 16 13 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 14 N -0.71 -17.16 5.23 -51.35 -0.27 -17.43 16 15 C -0.24 -6.50 9.96 -15.06 -0.15 -6.65 16 16 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 19 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.14 -2.18 6.07 -24.90 -0.15 -2.33 16 24 C 0.14 2.25 3.45 -66.95 -0.23 2.02 16 25 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 26 C -0.16 -2.22 9.10 37.16 0.34 -1.88 16 27 C 0.15 2.20 10.76 -17.01 -0.18 2.02 16 28 N -0.50 -6.93 9.37 -12.76 -0.12 -7.05 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 33 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 34 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.11 2.13 5.89 -51.93 -0.31 1.83 16 37 H 0.38 10.15 7.86 -40.82 -0.32 9.83 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.07 1.02 6.90 -51.93 -0.36 0.66 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.18 2.36 7.64 -52.49 -0.40 1.96 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -31.83 367.19 -7.32 -39.16 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -6.41 Total: 9.47 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: -1.09 Total: 11.28 kcal Atomic # 7 Polarization: -67.97 SS G_CDS: -0.23 Total: -68.20 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.10 Total: -14.29 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.83 -7.32 -39.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989864754.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.836 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds