Wall clock time and date at job start Tue Mar 31 2020 13:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42891 * 109.47024 * 2 1 4 4 C 1.35484 * 116.99970 * 179.97438 * 3 2 1 5 5 C 1.39639 * 119.97663 * 180.02562 * 4 3 2 6 6 N 1.31532 * 120.03985 * 179.70225 * 5 4 3 7 7 C 1.33220 * 119.98734 * 0.54982 * 6 5 4 8 8 C 1.47897 * 120.02335 * 179.72030 * 7 6 5 9 9 O 1.21546 * 119.99822 * 179.72323 * 8 7 6 10 10 N 1.34776 * 119.99957 * 359.73335 * 8 7 6 11 11 C 1.47017 * 125.65312 * 359.96813 * 10 8 7 12 12 C 1.54315 * 107.27451 * 179.00099 * 11 10 8 13 13 H 1.09005 * 110.72207 * 96.17382 * 12 11 10 14 14 N 1.46500 * 110.87331 * 219.37528 * 12 11 10 15 15 C 1.36943 * 119.99932 * 268.60704 * 14 12 11 16 16 H 1.07997 * 119.99971 * 0.02562 * 15 14 12 17 17 C 1.38813 * 120.00002 * 179.97438 * 15 14 12 18 18 N 1.31615 * 119.99848 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99960 * 179.97438 * 17 15 14 20 20 H 1.48510 * 109.46876 * 90.00465 * 19 17 15 21 21 H 1.48497 * 109.47307 * 210.00318 * 19 17 15 22 22 H 1.48502 * 109.47488 * 330.00891 * 19 17 15 23 23 C 1.55156 * 102.94436 * 337.80810 * 12 11 10 24 24 C 1.47471 * 125.62717 * 179.97438 * 10 8 7 25 25 H 1.09008 * 110.34870 * 85.22524 * 24 10 8 26 26 C 1.53001 * 110.40642 * 322.89443 * 24 10 8 27 27 C 1.39391 * 119.94570 * 359.44922 * 7 6 5 28 28 N 1.32072 * 119.96803 * 0.27444 * 27 7 6 29 29 H 1.09000 * 109.47249 * 60.00041 * 1 2 3 30 30 H 1.08998 * 109.47161 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47371 * 299.99776 * 1 2 3 32 32 H 1.09003 * 109.46673 * 240.00102 * 2 1 3 33 33 H 1.08994 * 109.46742 * 120.00432 * 2 1 3 34 34 H 1.07997 * 119.97903 * 359.97438 * 5 4 3 35 35 H 1.08998 * 109.88206 * 59.58080 * 11 10 8 36 36 H 1.09004 * 110.01118 * 298.49173 * 11 10 8 37 37 H 0.96999 * 120.00052 * 88.60774 * 14 12 11 38 38 H 0.97000 * 119.99817 * 180.02562 * 18 17 15 39 39 H 1.09002 * 111.00677 * 153.57697 * 23 12 11 40 40 H 1.09002 * 111.00564 * 277.38955 * 23 12 11 41 41 H 1.08998 * 109.46676 * 304.59236 * 26 24 10 42 42 H 1.09000 * 109.47559 * 64.59168 * 26 24 10 43 43 H 1.09001 * 109.47084 * 184.59703 * 26 24 10 44 44 H 1.08003 * 120.01050 * 180.29447 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3495 1.5247 0.0005 5 6 3.8826 2.8153 0.0011 6 7 5.1864 2.9891 0.0076 7 6 5.9989 1.9334 0.0025 8 6 7.4650 2.1279 0.0034 9 8 8.2059 1.1644 0.0039 10 7 7.9795 3.3736 0.0041 11 6 7.2025 4.6217 0.0032 12 6 8.2110 5.7894 0.0301 13 1 8.3963 6.1622 -0.9773 14 7 7.7376 6.8680 0.9010 15 6 6.9855 7.8876 0.3812 16 1 6.7410 7.8962 -0.6707 17 6 6.5364 8.9094 1.2065 18 7 6.8339 8.8985 2.4886 19 14 5.5111 10.3004 0.4974 20 1 4.0717 9.9429 0.5733 21 1 5.7546 11.5414 1.2757 22 1 5.8917 10.5228 -0.9207 23 6 9.4885 5.1318 0.6156 24 6 9.4153 3.7100 0.0056 25 1 9.8049 3.7137 -1.0125 26 6 10.1947 2.7182 0.8715 27 6 5.4661 0.6453 0.0019 28 7 4.1567 0.4730 0.0010 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.2241 3.6713 0.0007 35 1 6.5650 4.6620 0.8864 36 1 6.5916 4.6801 -0.8977 37 1 7.9568 6.8601 1.8459 38 1 6.5198 9.6124 3.0654 39 1 10.3850 5.6546 0.2822 40 1 9.4439 5.0924 1.7040 41 1 9.7671 2.6969 1.8738 42 1 10.1339 1.7237 0.4293 43 1 11.2384 3.0274 0.9282 44 1 6.1238 -0.2113 0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989864755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:59 Heat of formation + Delta-G solvation = 1.826735 kcal Electronic energy + Delta-G solvation = -26951.838407 eV Core-core repulsion = 23098.720167 eV Total energy + Delta-G solvation = -3853.118240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.57632 -39.89393 -38.67987 -37.28617 -34.50556 -34.11075 -32.57254 -31.68316 -31.35692 -30.22499 -28.39081 -25.72975 -25.14517 -24.88642 -23.77358 -22.99298 -21.93793 -20.23905 -19.50835 -18.88460 -18.04982 -17.23353 -16.79224 -16.74413 -16.27192 -15.53909 -15.04687 -14.98029 -14.75252 -14.33843 -14.05985 -13.74284 -13.64377 -13.24766 -13.06099 -12.96242 -12.88715 -12.63202 -12.23501 -12.03550 -11.89677 -11.76323 -11.64615 -11.45895 -11.19932 -11.08356 -10.97587 -10.70822 -10.64744 -10.27596 -10.04003 -9.87503 -9.71466 -9.31983 -8.96910 -8.92029 -8.27278 -7.05029 -5.81725 -3.11899 0.35466 0.86574 2.50638 2.75565 3.08648 3.41429 3.47014 3.48393 3.68944 3.77714 3.96934 4.25345 4.54110 4.63416 4.64679 4.70782 4.95543 5.01202 5.12288 5.17736 5.25328 5.28298 5.37985 5.45485 5.50432 5.62046 5.64598 5.75809 5.82401 5.86240 5.96064 6.16540 6.19518 6.37116 6.43214 6.52104 6.68042 6.69940 6.75188 6.91808 6.97530 7.45306 7.66354 7.77633 8.26631 8.35971 9.47667 10.02017 10.36959 11.40423 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009545 B = 0.003983 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.778269 B = 7028.291841 C = 9668.540958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.294 6.294 4 C 0.293 3.707 5 C 0.048 3.952 6 N -0.359 5.359 7 C -0.013 4.013 8 C 0.590 3.410 9 O -0.546 6.546 10 N -0.587 5.587 11 C 0.088 3.912 12 C 0.167 3.833 13 H 0.066 0.934 14 N -0.711 5.711 15 C -0.244 4.244 16 H 0.072 0.928 17 C -0.010 4.010 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.281 1.281 23 C -0.138 4.138 24 C 0.135 3.865 25 H 0.076 0.924 26 C -0.161 4.161 27 C 0.153 3.847 28 N -0.505 5.505 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.185 0.815 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.482 -17.746 -5.343 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.199 6.199 4 C 0.109 3.891 5 C -0.119 4.119 6 N -0.076 5.076 7 C -0.152 4.152 8 C 0.376 3.624 9 O -0.425 6.425 10 N -0.318 5.318 11 C -0.037 4.037 12 C 0.055 3.945 13 H 0.084 0.916 14 N -0.351 5.351 15 C -0.375 4.375 16 H 0.090 0.910 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.177 4.177 24 C 0.032 3.968 25 H 0.093 0.907 26 C -0.218 4.218 27 C -0.007 4.007 28 N -0.234 5.234 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.202 0.798 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.221 0.779 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.420 -17.968 -5.423 19.535 hybrid contribution -0.761 0.607 0.033 0.974 sum -6.182 -17.361 -5.389 19.201 Atomic orbital electron populations 1.21829 0.92577 1.03070 1.03619 1.22745 0.95172 0.80633 1.02826 1.86259 1.15863 1.31233 1.86501 1.21319 0.85084 0.91812 0.90881 1.23172 0.91902 0.95116 1.01747 1.68856 1.02881 1.31850 1.04054 1.22006 0.95694 0.90976 1.06504 1.17100 0.85246 0.82475 0.77576 1.90717 1.59153 1.39835 1.52830 1.48505 1.08354 1.05716 1.69258 1.23394 0.95519 0.82034 1.02763 1.21277 0.90176 0.87737 0.95330 0.91568 1.42354 1.62077 1.22615 1.08056 1.19256 1.24754 0.99754 0.93747 0.90961 1.24751 1.01192 0.99079 0.95567 1.69661 1.50090 1.34548 1.03524 0.86196 0.80182 0.81844 0.77977 1.21637 1.21806 1.20687 1.23186 0.99909 0.93281 1.01336 1.21953 0.80259 0.95103 0.99444 0.90650 1.22131 0.99117 1.00635 0.99930 1.23457 0.89809 0.97643 0.89761 1.68223 1.05269 1.32547 1.17375 0.91448 0.90132 0.91398 0.91294 0.91263 0.79848 0.90060 0.91650 0.77926 0.93421 0.90115 0.90528 0.92726 0.90089 0.92171 0.79857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.56 16 2 C 0.06 0.52 6.04 37.16 0.22 0.74 16 3 O -0.29 -3.26 10.12 -18.14 -0.18 -3.44 16 4 C 0.29 3.65 7.50 -16.71 -0.13 3.52 16 5 C 0.05 0.62 11.18 -17.16 -0.19 0.43 16 6 N -0.36 -5.48 7.01 -9.49 -0.07 -5.55 16 7 C -0.01 -0.19 6.71 -82.88 -0.56 -0.75 16 8 C 0.59 9.64 7.61 -12.31 -0.09 9.55 16 9 O -0.55 -9.36 14.06 5.33 0.07 -9.29 16 10 N -0.59 -9.63 3.24 -164.12 -0.53 -10.16 16 11 C 0.09 1.58 5.16 -3.07 -0.02 1.57 16 12 C 0.17 3.16 3.61 -66.10 -0.24 2.92 16 13 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 14 N -0.71 -16.95 5.16 -51.65 -0.27 -17.22 16 15 C -0.24 -6.46 9.96 -15.06 -0.15 -6.61 16 16 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 17 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 18 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 19 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.14 -2.19 6.13 -24.60 -0.15 -2.34 16 24 C 0.14 2.00 3.77 -66.40 -0.25 1.75 16 25 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 26 C -0.16 -2.22 8.60 37.16 0.32 -1.90 16 27 C 0.15 1.97 10.76 -17.02 -0.18 1.79 16 28 N -0.50 -6.37 9.37 -12.76 -0.12 -6.49 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 33 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 34 H 0.18 2.04 8.06 -52.49 -0.42 1.62 16 35 H 0.08 1.64 7.30 -51.93 -0.38 1.26 16 36 H 0.07 1.18 7.55 -51.93 -0.39 0.79 16 37 H 0.39 9.88 7.76 -40.82 -0.32 9.56 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.08 1.28 7.93 -51.93 -0.41 0.87 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 1.20 6.09 -51.93 -0.32 0.89 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.18 2.05 7.64 -52.48 -0.40 1.65 16 LS Contribution 365.46 15.07 5.51 5.51 Total: -1.00 -30.56 365.46 -7.42 -37.98 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.41 Total: 8.75 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -1.13 Total: 9.76 kcal Atomic # 7 Polarization: -65.72 SS G_CDS: -0.26 Total: -65.98 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.11 Total: -12.73 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.56 -7.42 -37.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989864755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.805 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds