Wall clock time and date at job start Tue Mar 31 2020 13:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47454 * 2 1 4 4 C 1.35478 * 117.00568 * 179.97438 * 3 2 1 5 5 C 1.39634 * 119.98048 * 180.02562 * 4 3 2 6 6 N 1.31532 * 120.03862 * 180.02562 * 5 4 3 7 7 C 1.33207 * 119.98859 * 359.97209 * 6 5 4 8 8 C 1.47909 * 120.01964 * 180.02562 * 7 6 5 9 9 O 1.21555 * 119.99774 * 179.97438 * 8 7 6 10 10 N 1.34768 * 120.00399 * 0.02562 * 8 7 6 11 11 C 1.47433 * 125.64669 * 0.04813 * 10 8 7 12 12 C 1.54910 * 104.83102 * 204.08506 * 11 10 8 13 13 H 1.08997 * 111.03758 * 81.07988 * 12 11 10 14 14 N 1.46506 * 111.00124 * 204.91900 * 12 11 10 15 15 C 1.36938 * 119.99629 * 267.19513 * 14 12 11 16 16 H 1.07998 * 120.00011 * 0.02562 * 15 14 12 17 17 C 1.38815 * 119.99969 * 180.02562 * 15 14 12 18 18 N 1.31620 * 119.99451 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00030 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47045 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46902 * 120.00024 * 19 17 15 22 22 H 1.48500 * 109.46833 * 239.99922 * 19 17 15 23 23 C 1.55154 * 101.58203 * 322.99116 * 12 11 10 24 24 C 1.47023 * 125.65460 * 180.02562 * 10 8 7 25 25 H 1.09001 * 109.87803 * 298.40455 * 24 10 8 26 26 C 1.53000 * 109.88335 * 59.56241 * 24 10 8 27 27 C 1.39389 * 119.95703 * 0.28204 * 7 6 5 28 28 N 1.32078 * 119.95503 * 359.45183 * 27 7 6 29 29 H 1.09011 * 109.46780 * 60.00583 * 1 2 3 30 30 H 1.09002 * 109.47282 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47799 * 300.00285 * 1 2 3 32 32 H 1.09000 * 109.47799 * 239.99352 * 2 1 3 33 33 H 1.09000 * 109.46901 * 120.00161 * 2 1 3 34 34 H 1.08002 * 119.97879 * 0.02562 * 5 4 3 35 35 H 1.09006 * 110.36319 * 85.24849 * 11 10 8 36 36 H 1.08995 * 110.36350 * 322.92502 * 11 10 8 37 37 H 0.96995 * 119.99814 * 87.19494 * 14 12 11 38 38 H 0.97000 * 119.99482 * 180.02562 * 18 17 15 39 39 H 1.09002 * 110.72211 * 153.86855 * 23 12 11 40 40 H 1.09005 * 110.72174 * 277.13916 * 23 12 11 41 41 H 1.08999 * 109.47140 * 177.81268 * 26 24 10 42 42 H 1.09008 * 109.47023 * 297.81627 * 26 24 10 43 43 H 1.08998 * 109.46705 * 57.81066 * 26 24 10 44 44 H 1.08000 * 120.01985 * 179.70186 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3495 1.5248 0.0005 5 6 3.8827 2.8153 0.0011 6 7 5.1865 2.9890 0.0011 7 6 5.9988 1.9333 0.0012 8 6 7.4651 2.1279 0.0017 9 8 8.2060 1.1642 0.0022 10 7 7.9796 3.3735 0.0028 11 6 7.2003 4.6250 0.0044 12 6 8.1510 5.6848 -0.6061 13 1 8.1544 5.6267 -1.6945 14 7 7.7934 7.0324 -0.1560 15 6 6.9432 7.8013 -0.9051 16 1 6.5361 7.4142 -1.8275 17 6 6.6047 9.0783 -0.4790 18 7 7.1013 9.5502 0.6448 19 14 5.4444 10.1269 -1.5006 20 1 5.0287 9.3711 -2.7093 21 1 4.2452 10.4678 -0.6937 22 1 6.1366 11.3752 -1.9104 23 6 9.5204 5.2485 -0.0216 24 6 9.4109 3.7094 0.0029 25 1 9.8833 3.3186 0.9042 26 6 10.0840 3.1198 -1.2382 27 6 5.4662 0.6452 -0.0048 28 7 4.1567 0.4730 0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.2241 3.6713 0.0015 35 1 6.9285 4.9012 1.0232 36 1 6.3075 4.5167 -0.6113 37 1 8.1588 7.3799 0.6726 38 1 6.8645 10.4424 0.9428 39 1 10.3360 5.5666 -0.6710 40 1 9.6527 5.6421 0.9863 41 1 11.1358 3.4054 -1.2514 42 1 10.0027 2.0330 -1.2138 43 1 9.5927 3.5009 -2.1334 44 1 6.1239 -0.2114 -0.0096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989864756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:03 Heat of formation + Delta-G solvation = 1.576040 kcal Electronic energy + Delta-G solvation = -26932.843486 eV Core-core repulsion = 23079.714375 eV Total energy + Delta-G solvation = -3853.129111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.61103 -39.89830 -38.70342 -37.34701 -34.54503 -34.12405 -32.58123 -31.69931 -31.28125 -30.27252 -28.30526 -25.75004 -25.24921 -24.96693 -23.77773 -23.02185 -22.03293 -20.26945 -19.38563 -18.91017 -18.06760 -17.33731 -16.97246 -16.80756 -15.95068 -15.58244 -15.07960 -14.89516 -14.79299 -14.36246 -14.16140 -13.86692 -13.42189 -13.15936 -13.02638 -12.96779 -12.93851 -12.83015 -12.40992 -12.14521 -11.90442 -11.81476 -11.65783 -11.48628 -11.17252 -11.10729 -10.94889 -10.65027 -10.61174 -10.21421 -10.07633 -9.94028 -9.74600 -9.35110 -8.99500 -8.91998 -8.30957 -7.04465 -5.82459 -3.12414 0.32770 0.82765 2.48200 2.73285 3.06559 3.40735 3.47010 3.48874 3.66028 3.75087 3.94453 4.22509 4.52780 4.61832 4.63406 4.69476 4.93124 4.99176 5.09539 5.19878 5.23783 5.28143 5.35377 5.43976 5.50775 5.61918 5.63701 5.69092 5.78878 5.89304 5.95046 6.13993 6.25577 6.30397 6.37816 6.51046 6.63074 6.69147 6.80983 6.87926 6.92659 7.41504 7.66758 7.76133 8.23799 8.35434 9.47205 10.01406 10.36483 11.39776 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009740 B = 0.003925 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.952472 B = 7132.023681 C = 9706.112821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.294 6.294 4 C 0.293 3.707 5 C 0.047 3.953 6 N -0.360 5.360 7 C -0.012 4.012 8 C 0.589 3.411 9 O -0.548 6.548 10 N -0.586 5.586 11 C 0.076 3.924 12 C 0.170 3.830 13 H 0.066 0.934 14 N -0.711 5.711 15 C -0.243 4.243 16 H 0.073 0.927 17 C -0.010 4.010 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.292 1.292 23 C -0.139 4.139 24 C 0.137 3.863 25 H 0.072 0.928 26 C -0.161 4.161 27 C 0.153 3.847 28 N -0.504 5.504 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.185 0.815 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.387 0.613 38 H 0.255 0.745 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.296 -18.853 -0.980 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.198 6.198 4 C 0.109 3.891 5 C -0.120 4.120 6 N -0.077 5.077 7 C -0.150 4.150 8 C 0.375 3.625 9 O -0.426 6.426 10 N -0.317 5.317 11 C -0.050 4.050 12 C 0.057 3.943 13 H 0.084 0.916 14 N -0.350 5.350 15 C -0.374 4.374 16 H 0.091 0.909 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.219 1.219 23 C -0.178 4.178 24 C 0.034 3.966 25 H 0.090 0.910 26 C -0.219 4.219 27 C -0.006 4.006 28 N -0.233 5.233 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.202 0.798 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.221 0.779 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.253 -19.137 -1.104 20.163 hybrid contribution -0.677 0.550 -0.125 0.881 sum -6.930 -18.587 -1.229 19.875 Atomic orbital electron populations 1.21830 0.92561 1.03084 1.03624 1.22749 0.95183 0.80606 1.02841 1.86259 1.15845 1.31263 1.86476 1.21317 0.85099 0.91797 0.90859 1.23214 0.91961 0.95165 1.01620 1.68886 1.02860 1.31581 1.04401 1.21987 0.95608 0.91005 1.06437 1.17099 0.85273 0.82461 0.77659 1.90753 1.59474 1.39738 1.52685 1.48480 1.08305 1.05807 1.69142 1.23818 0.96815 0.81756 1.02561 1.21368 0.90170 0.85718 0.96998 0.91633 1.42306 1.55337 1.10303 1.27102 1.19295 1.19590 0.95415 1.03087 0.90939 1.24752 1.00727 0.97590 0.97546 1.69671 1.47916 1.17816 1.22402 0.86127 0.80387 0.80413 0.79306 1.20480 1.21809 1.21862 1.23051 1.00156 0.92072 1.02547 1.21580 0.80665 0.95768 0.98567 0.90987 1.22138 1.00140 1.02107 0.97524 1.23459 0.89808 0.97624 0.89739 1.68231 1.05262 1.32549 1.17305 0.91420 0.90122 0.91415 0.91262 0.91270 0.79782 0.91367 0.88552 0.77910 0.93463 0.90136 0.90566 0.91799 0.91436 0.92384 0.79829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.16 0.38 -0.52 16 2 C 0.06 0.50 6.04 37.16 0.22 0.73 16 3 O -0.29 -3.17 10.12 -18.13 -0.18 -3.35 16 4 C 0.29 3.55 7.50 -16.71 -0.13 3.43 16 5 C 0.05 0.60 11.18 -17.16 -0.19 0.41 16 6 N -0.36 -5.35 6.76 -9.49 -0.06 -5.42 16 7 C -0.01 -0.17 6.71 -82.88 -0.56 -0.73 16 8 C 0.59 9.59 7.62 -12.30 -0.09 9.50 16 9 O -0.55 -9.52 15.24 5.32 0.08 -9.44 16 10 N -0.59 -9.59 3.08 -164.09 -0.51 -10.09 16 11 C 0.08 1.35 5.64 -2.52 -0.01 1.34 16 12 C 0.17 3.23 3.71 -65.78 -0.24 2.99 16 13 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 14 N -0.71 -16.87 5.24 -51.35 -0.27 -17.14 16 15 C -0.24 -6.43 9.96 -15.06 -0.15 -6.58 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -27.15 13.06 55.49 0.72 -26.42 16 19 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 C -0.14 -2.20 6.14 -24.90 -0.15 -2.35 16 24 C 0.14 2.05 3.49 -66.96 -0.23 1.82 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 C -0.16 -2.19 9.05 37.16 0.34 -1.85 16 27 C 0.15 1.94 10.76 -17.02 -0.18 1.76 16 28 N -0.50 -6.22 9.37 -12.76 -0.12 -6.34 16 29 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 33 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 34 H 0.19 1.95 8.06 -52.49 -0.42 1.53 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.10 1.77 5.89 -51.93 -0.31 1.47 16 37 H 0.39 9.77 7.76 -40.82 -0.32 9.45 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.08 1.18 7.83 -51.93 -0.41 0.78 16 40 H 0.08 1.22 8.00 -51.93 -0.42 0.80 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.98 6.77 -51.92 -0.35 0.63 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.18 2.02 7.64 -52.49 -0.40 1.62 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -30.60 366.72 -7.32 -37.92 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.39 Total: 8.50 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: -1.10 Total: 9.56 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -0.23 Total: -65.41 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.10 Total: -12.78 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.60 -7.32 -37.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989864756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.498 kcal (2) G-P(sol) polarization free energy of solvation -30.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds