Wall clock time and date at job start Tue Mar 31 2020 13:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.46954 * 2 1 4 4 C 1.35486 * 117.00035 * 179.97438 * 3 2 1 5 5 C 1.39624 * 119.97450 * 179.97438 * 4 3 2 6 6 N 1.31537 * 120.03813 * 180.02562 * 5 4 3 7 7 C 1.33208 * 119.98783 * 0.02562 * 6 5 4 8 8 C 1.47898 * 120.02643 * 179.97438 * 7 6 5 9 9 O 1.21553 * 120.00433 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99964 * 0.02562 * 8 7 6 11 11 C 1.47425 * 125.64522 * 359.69798 * 10 8 7 12 12 C 1.55131 * 104.72312 * 155.81650 * 11 10 8 13 13 H 1.09002 * 111.18997 * 279.19239 * 12 11 10 14 14 N 1.46499 * 110.94174 * 155.29021 * 12 11 10 15 15 C 1.36930 * 120.00385 * 92.95239 * 14 12 11 16 16 H 1.07999 * 119.99857 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00222 * 179.97438 * 15 14 12 18 18 N 1.31626 * 119.99829 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00041 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47459 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47144 * 120.00301 * 19 17 15 22 22 H 1.48507 * 109.47026 * 240.00266 * 19 17 15 23 23 C 1.55156 * 101.48719 * 37.29256 * 12 11 10 24 24 C 1.47025 * 125.64985 * 179.97438 * 10 8 7 25 25 H 1.08990 * 109.88427 * 300.44634 * 24 10 8 26 26 C 1.52997 * 109.87964 * 61.61247 * 24 10 8 27 27 C 1.39389 * 119.95310 * 359.97438 * 7 6 5 28 28 N 1.32084 * 119.95999 * 0.02562 * 27 7 6 29 29 H 1.09001 * 109.46823 * 60.00181 * 1 2 3 30 30 H 1.09004 * 109.46940 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47393 * 300.00188 * 1 2 3 32 32 H 1.08991 * 109.47572 * 240.00005 * 2 1 3 33 33 H 1.08996 * 109.46850 * 119.99337 * 2 1 3 34 34 H 1.07998 * 119.98426 * 359.97438 * 5 4 3 35 35 H 1.08999 * 110.36718 * 274.74033 * 11 10 8 36 36 H 1.08998 * 110.36970 * 37.06923 * 11 10 8 37 37 H 0.97003 * 119.99342 * 272.95940 * 14 12 11 38 38 H 0.97000 * 119.99660 * 179.97438 * 18 17 15 39 39 H 1.08998 * 110.71866 * 205.97253 * 23 12 11 40 40 H 1.08998 * 110.72082 * 82.69754 * 23 12 11 41 41 H 1.09002 * 109.47199 * 58.54268 * 26 24 10 42 42 H 1.08998 * 109.47214 * 178.54271 * 26 24 10 43 43 H 1.09007 * 109.47084 * 298.54506 * 26 24 10 44 44 H 1.08004 * 120.02063 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3495 1.5249 0.0005 5 6 3.8826 2.8154 0.0000 6 7 5.1864 2.9892 0.0000 7 6 5.9988 1.9336 0.0000 8 6 7.4650 2.1281 -0.0005 9 8 8.2059 1.1645 -0.0010 10 7 7.9795 3.3738 -0.0005 11 6 7.2003 4.6252 -0.0063 12 6 8.1509 5.6845 0.6107 13 1 8.1543 5.6246 1.6991 14 7 7.7936 7.0328 0.1630 15 6 6.9436 7.8007 0.9132 16 1 6.5369 7.4124 1.8353 17 6 6.6054 9.0785 0.4892 18 7 7.1014 9.5518 -0.6344 19 14 5.4464 10.1261 1.5131 20 1 5.0320 9.3693 2.7216 21 1 6.1394 11.3735 1.9242 22 1 4.2467 10.4688 0.7075 23 6 9.5203 5.2488 0.0256 24 6 9.4109 3.7096 -0.0005 25 1 9.8904 3.2887 0.8831 26 6 10.0737 3.1626 -1.2663 27 6 5.4662 0.6455 0.0005 28 7 4.1566 0.4732 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.2240 3.6714 -0.0012 35 1 6.9326 4.9007 -1.0263 36 1 6.3049 4.5174 0.6059 37 1 8.1591 7.3816 -0.6651 38 1 6.8648 10.4446 -0.9308 39 1 10.3359 5.5663 0.6753 40 1 9.6524 5.6435 -0.9818 41 1 9.5837 3.5839 -2.1441 42 1 11.1284 3.4374 -1.2720 43 1 9.9810 2.0766 -1.2846 44 1 6.1239 -0.2112 0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989864757.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:06 Heat of formation + Delta-G solvation = 1.262310 kcal Electronic energy + Delta-G solvation = -26909.520801 eV Core-core repulsion = 23056.378086 eV Total energy + Delta-G solvation = -3853.142715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.60979 -39.88101 -38.69369 -37.32855 -34.54313 -34.13853 -32.57856 -31.67000 -31.33715 -30.27089 -28.37728 -25.75442 -25.21628 -24.94293 -23.77122 -23.01632 -21.92816 -20.26531 -19.43194 -18.92943 -18.10308 -17.28049 -16.85683 -16.80617 -16.22583 -15.54515 -15.07344 -14.97679 -14.74441 -14.30173 -14.03926 -13.87878 -13.60168 -13.25070 -13.04495 -12.97886 -12.86951 -12.67808 -12.24762 -12.13675 -12.10772 -11.73991 -11.65327 -11.49657 -11.12189 -11.09082 -10.97824 -10.67983 -10.61158 -10.22901 -10.09609 -9.97429 -9.74524 -9.33950 -8.99650 -8.92037 -8.30163 -7.04419 -5.82460 -3.12397 0.32844 0.82766 2.48289 2.73371 3.06858 3.40772 3.47080 3.48920 3.66121 3.75169 3.94660 4.22555 4.52702 4.61913 4.63448 4.69808 4.93284 4.99297 5.09234 5.18248 5.25044 5.26859 5.35419 5.44025 5.51870 5.62285 5.62824 5.74080 5.79834 5.84905 5.88835 6.15205 6.20778 6.33199 6.39953 6.52351 6.60240 6.69021 6.81332 6.87912 6.92450 7.41519 7.66824 7.76421 8.23870 8.35387 9.47185 10.01382 10.36459 11.39760 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009640 B = 0.003936 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.968978 B = 7111.862904 C = 9745.291588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.294 6.294 4 C 0.293 3.707 5 C 0.047 3.953 6 N -0.360 5.360 7 C -0.012 4.012 8 C 0.589 3.411 9 O -0.548 6.548 10 N -0.586 5.586 11 C 0.076 3.924 12 C 0.169 3.831 13 H 0.066 0.934 14 N -0.711 5.711 15 C -0.243 4.243 16 H 0.073 0.927 17 C -0.010 4.010 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.291 1.291 23 C -0.139 4.139 24 C 0.137 3.863 25 H 0.075 0.925 26 C -0.161 4.161 27 C 0.153 3.847 28 N -0.504 5.504 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.185 0.815 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.387 0.613 38 H 0.255 0.745 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.298 -18.831 0.205 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.199 6.199 4 C 0.109 3.891 5 C -0.120 4.120 6 N -0.077 5.077 7 C -0.150 4.150 8 C 0.375 3.625 9 O -0.427 6.427 10 N -0.317 5.317 11 C -0.049 4.049 12 C 0.056 3.944 13 H 0.084 0.916 14 N -0.350 5.350 15 C -0.374 4.374 16 H 0.091 0.909 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.218 1.218 23 C -0.178 4.178 24 C 0.034 3.966 25 H 0.093 0.907 26 C -0.219 4.219 27 C -0.006 4.006 28 N -0.233 5.233 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.202 0.798 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.221 0.779 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.255 -19.114 0.337 20.114 hybrid contribution -0.670 0.546 0.133 0.874 sum -6.924 -18.568 0.470 19.823 Atomic orbital electron populations 1.21832 0.92563 1.03082 1.03624 1.22750 0.95183 0.80606 1.02839 1.86263 1.15844 1.31259 1.86484 1.21313 0.85101 0.91796 0.90867 1.23213 0.91965 0.95167 1.01615 1.68889 1.02855 1.31575 1.04406 1.21986 0.95613 0.91003 1.06424 1.17101 0.85272 0.82469 0.77668 1.90754 1.59486 1.39743 1.52688 1.48489 1.08348 1.05801 1.69112 1.23853 0.96826 0.81740 1.02506 1.21424 0.90225 0.85748 0.96993 0.91571 1.42299 1.55322 1.10231 1.27153 1.19297 1.19607 0.95390 1.03097 0.90923 1.24753 1.00735 0.97583 0.97555 1.69673 1.47941 1.17745 1.22454 0.86125 0.80371 0.80405 0.79314 1.20477 1.21871 1.21809 1.23071 0.99982 0.92043 1.02683 1.21600 0.80691 0.95852 0.98464 0.90743 1.22135 1.00315 1.02155 0.97292 1.23461 0.89808 0.97627 0.89743 1.68232 1.05260 1.32546 1.17301 0.91417 0.90123 0.91418 0.91268 0.91262 0.79782 0.91420 0.88507 0.77910 0.93464 0.90324 0.90377 0.92503 0.91752 0.91570 0.79831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.16 0.38 -0.52 16 2 C 0.06 0.50 6.04 37.16 0.22 0.73 16 3 O -0.29 -3.17 10.12 -18.15 -0.18 -3.35 16 4 C 0.29 3.55 7.50 -16.71 -0.13 3.42 16 5 C 0.05 0.60 11.18 -17.16 -0.19 0.41 16 6 N -0.36 -5.35 6.75 -9.49 -0.06 -5.42 16 7 C -0.01 -0.17 6.71 -82.89 -0.56 -0.73 16 8 C 0.59 9.59 7.63 -12.30 -0.09 9.50 16 9 O -0.55 -9.54 15.37 5.32 0.08 -9.45 16 10 N -0.59 -9.58 3.06 -163.96 -0.50 -10.08 16 11 C 0.08 1.35 5.66 -2.41 -0.01 1.34 16 12 C 0.17 3.20 3.73 -65.66 -0.24 2.96 16 13 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 14 N -0.71 -16.85 5.24 -51.24 -0.27 -17.12 16 15 C -0.24 -6.43 9.96 -15.06 -0.15 -6.58 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -27.14 13.06 55.49 0.72 -26.42 16 19 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 C -0.14 -2.19 6.12 -24.89 -0.15 -2.34 16 24 C 0.14 2.05 3.46 -66.95 -0.23 1.82 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 C -0.16 -2.19 9.10 37.16 0.34 -1.85 16 27 C 0.15 1.94 10.76 -17.01 -0.18 1.76 16 28 N -0.50 -6.22 9.37 -12.76 -0.12 -6.34 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 33 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 34 H 0.19 1.95 8.06 -52.49 -0.42 1.53 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.10 1.78 5.87 -51.93 -0.30 1.47 16 37 H 0.39 9.76 7.76 -40.82 -0.32 9.45 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.08 1.26 7.71 -51.93 -0.40 0.85 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.96 6.88 -51.93 -0.36 0.61 16 44 H 0.18 2.02 7.64 -52.48 -0.40 1.62 16 LS Contribution 366.98 15.07 5.53 5.53 Total: -1.00 -30.60 366.98 -7.31 -37.92 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.39 Total: 8.51 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -1.09 Total: 9.54 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -0.23 Total: -65.37 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.10 Total: -12.80 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.60 -7.31 -37.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989864757.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.177 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds