Wall clock time and date at job start Tue Mar 31 2020 12:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47380 * 2 1 4 4 N 1.46503 * 109.47007 * 119.99913 * 2 1 3 5 5 C 1.34777 * 120.00187 * 275.00319 * 4 2 1 6 6 O 1.21546 * 119.99945 * 359.97438 * 5 4 2 7 7 C 1.47938 * 120.00184 * 179.97438 * 5 4 2 8 8 C 1.39969 * 120.11537 * 179.97438 * 7 5 4 9 9 C 1.38422 * 117.96984 * 180.02562 * 8 7 5 10 10 C 1.39353 * 118.03272 * 359.97438 * 9 8 7 11 11 O 1.35520 * 120.02390 * 179.97438 * 10 9 8 12 12 N 1.32669 * 119.94452 * 0.02562 * 10 9 8 13 13 N 1.28359 * 122.19990 * 359.97438 * 12 10 9 14 14 C 1.52998 * 109.47255 * 239.99846 * 2 1 3 15 15 C 1.53036 * 109.46287 * 180.02562 * 14 2 1 16 16 C 1.53192 * 109.31408 * 178.61533 * 15 14 2 17 17 N 1.46926 * 108.77660 * 54.63504 * 16 15 14 18 18 C 1.36931 * 120.63652 * 126.41274 * 17 16 15 19 19 H 1.07999 * 120.00198 * 207.65850 * 18 17 16 20 20 C 1.38815 * 119.99608 * 27.65737 * 18 17 16 21 21 N 1.31611 * 120.00345 * 17.37385 * 20 18 17 22 22 Si 1.86803 * 119.99648 * 197.38029 * 20 18 17 23 23 H 1.48495 * 109.47283 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47114 * 120.00122 * 22 20 18 25 25 H 1.48503 * 109.46730 * 239.99526 * 22 20 18 26 26 C 1.46932 * 118.73298 * 306.39108 * 17 16 15 27 27 C 1.53040 * 109.45862 * 60.00110 * 14 2 1 28 28 H 1.08998 * 109.47380 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47429 * 300.00354 * 1 2 3 30 30 H 1.09001 * 109.47004 * 60.00208 * 1 2 3 31 31 H 0.96999 * 119.99797 * 94.99761 * 4 2 1 32 32 H 1.08001 * 121.01947 * 0.04303 * 8 7 5 33 33 H 1.07999 * 120.98055 * 179.72976 * 9 8 7 34 34 H 0.96706 * 113.99314 * 90.00965 * 11 10 9 35 35 H 1.09006 * 109.45615 * 300.02959 * 14 2 1 36 36 H 1.09009 * 109.49357 * 298.56570 * 15 14 2 37 37 H 1.08998 * 109.49944 * 58.66105 * 15 14 2 38 38 H 1.08994 * 109.58789 * 294.84172 * 16 15 14 39 39 H 1.09004 * 109.58408 * 174.41751 * 16 15 14 40 40 H 0.97007 * 120.00542 * 179.97438 * 21 20 18 41 41 H 1.08995 * 109.58579 * 293.81772 * 26 17 16 42 42 H 1.09005 * 109.58355 * 173.40193 * 26 17 16 43 43 H 1.09000 * 109.49624 * 301.33537 * 27 14 2 44 44 H 1.08990 * 109.49813 * 61.43591 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3572 6 8 1.8583 1.1611 2.4117 7 6 2.6395 -0.7158 3.5653 8 6 2.7745 -0.0198 4.7721 9 6 3.2398 -0.7158 5.8744 10 6 3.5447 -2.0662 5.7155 11 8 4.0037 -2.7862 6.7679 12 7 3.3861 -2.6462 4.5328 13 7 2.9550 -2.0040 3.5085 14 6 2.0400 -0.7213 -1.2492 15 6 3.5704 -0.7217 -1.2486 16 6 4.0773 -1.4746 -2.4827 17 7 3.4745 -0.8770 -3.6820 18 6 4.2600 -0.4514 -4.7197 19 1 3.9209 0.3487 -5.3609 20 6 5.4923 -1.0485 -4.9474 21 7 5.7653 -2.2194 -4.4120 22 14 6.7633 -0.1899 -6.0138 23 1 6.2147 1.1041 -6.4930 24 1 7.9920 0.0573 -5.2173 25 1 7.0934 -1.0492 -7.1791 26 6 2.0125 -0.7451 -3.7468 27 6 1.5298 0.0004 -2.4986 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2489 -1.6318 1.1526 32 1 2.5231 1.0283 4.8413 33 1 3.3667 -0.2257 6.8284 34 1 3.3071 -3.2080 7.2895 35 1 1.6761 -1.7488 -1.2492 36 1 3.9344 0.3055 -1.2741 37 1 3.9337 -1.2147 -0.3470 38 1 3.7907 -2.5239 -2.4139 39 1 5.1627 -1.3931 -2.5401 40 1 6.6263 -2.6368 -4.5714 41 1 1.5575 -1.7349 -3.7811 42 1 1.7356 -0.1824 -4.6384 43 1 0.4400 0.0214 -2.4870 44 1 1.9137 1.0203 -2.5119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996906844.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:00 Heat of formation + Delta-G solvation = 0.650487 kcal Electronic energy + Delta-G solvation = -26855.008597 eV Core-core repulsion = 23001.839351 eV Total energy + Delta-G solvation = -3853.169246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.68703 -39.88832 -38.20765 -37.79597 -35.42859 -33.66100 -33.11094 -32.08038 -30.74964 -30.20040 -28.78149 -25.89967 -25.34951 -24.88070 -23.18474 -21.96582 -21.35910 -20.47139 -19.66275 -19.28610 -18.42018 -17.90550 -16.70873 -16.61556 -15.99888 -15.43832 -15.14089 -14.80264 -14.61980 -14.10310 -14.01052 -13.83938 -13.48526 -13.36156 -13.29906 -12.92795 -12.79592 -12.37360 -12.28641 -12.20195 -11.67292 -11.51940 -11.19623 -10.95520 -10.83176 -10.67340 -10.43836 -10.31387 -10.19605 -10.15371 -10.13228 -9.99689 -9.85997 -9.50149 -9.44242 -9.01640 -8.43173 -6.63097 -5.75048 -3.16741 -0.07135 0.24739 2.27353 2.75325 2.93036 3.25548 3.39591 3.47582 3.49713 3.62344 4.09775 4.21759 4.44521 4.49098 4.53194 4.92620 5.10743 5.20183 5.30732 5.33893 5.41300 5.46677 5.51605 5.64133 5.73464 5.82072 5.96713 6.09991 6.11332 6.27721 6.33575 6.42397 6.57895 6.64516 6.72587 6.75314 6.80964 6.86927 7.02154 7.36349 7.43880 7.70691 7.83573 7.96287 8.09449 8.49029 9.25472 9.89434 10.45930 11.33258 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015932 B = 0.002908 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.993191 B = 9626.843767 C =10695.075039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.089 0.911 4 N -0.693 5.693 5 C 0.576 3.424 6 O -0.532 6.532 7 C 0.017 3.983 8 C -0.048 4.048 9 C -0.141 4.141 10 C 0.272 3.728 11 O -0.472 6.472 12 N -0.253 5.253 13 N -0.179 5.179 14 C -0.085 4.085 15 C -0.135 4.135 16 C 0.171 3.829 17 N -0.593 5.593 18 C -0.250 4.250 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.902 5.902 22 Si 0.900 3.100 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.146 3.854 27 C -0.125 4.125 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.412 0.588 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.409 0.591 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.017 0.983 39 H 0.086 0.914 40 H 0.253 0.747 41 H 0.017 0.983 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.003 2.079 21.887 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.107 0.893 4 N -0.343 5.343 5 C 0.358 3.642 6 O -0.407 6.407 7 C -0.130 4.130 8 C -0.077 4.077 9 C -0.171 4.171 10 C 0.087 3.913 11 O -0.278 6.278 12 N -0.107 5.107 13 N -0.028 5.028 14 C -0.104 4.104 15 C -0.174 4.174 16 C 0.046 3.954 17 N -0.316 5.316 18 C -0.380 4.380 19 H 0.083 0.917 20 C -0.198 4.198 21 N -0.547 5.547 22 Si 0.730 3.270 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.019 3.981 27 C -0.165 4.165 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.248 0.752 32 H 0.186 0.814 33 H 0.181 0.819 34 H 0.269 0.731 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.035 0.965 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.381 1.635 20.852 22.924 hybrid contribution 0.445 0.909 0.708 1.235 sum -8.936 2.544 21.560 23.477 Atomic orbital electron populations 1.22215 0.95297 1.02156 1.02397 1.21295 0.93782 0.97679 0.83406 0.89285 1.46015 1.64422 1.14887 1.08943 1.17408 0.78401 0.86032 0.82362 1.90809 1.50708 1.14706 1.84526 1.23025 1.00553 0.93250 0.96143 1.22435 0.92327 1.02645 0.90327 1.22589 0.98342 0.94597 1.01548 1.21069 0.91699 0.89447 0.89042 1.84755 1.36016 1.68645 1.38367 1.73121 1.10200 1.30704 0.96632 1.73316 1.04286 1.05928 1.19312 1.21348 0.97361 0.99177 0.92515 1.22237 0.93504 1.01590 1.00096 1.20761 0.99449 0.92714 0.82508 1.44073 0.99528 1.72027 1.15924 1.19223 0.99131 1.12084 1.07564 0.91703 1.25027 1.00056 0.95353 0.99326 1.70041 1.22620 1.14093 1.47920 0.86257 0.81817 0.79117 0.79802 1.20287 1.21610 1.21780 1.20893 0.86134 0.96432 0.94631 1.22080 0.98709 0.99997 0.95681 0.92440 0.92676 0.90846 0.75168 0.81448 0.81896 0.73130 0.91226 0.92710 0.93368 0.96471 0.89551 0.93740 0.96518 0.92810 0.92638 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.13 37.16 0.34 -1.59 16 2 C 0.14 1.95 2.16 -67.93 -0.15 1.80 16 3 H 0.09 1.37 7.58 -51.93 -0.39 0.97 16 4 N -0.69 -9.07 4.35 -54.72 -0.24 -9.31 16 5 C 0.58 7.71 7.77 -12.29 -0.10 7.61 16 6 O -0.53 -8.21 16.05 5.33 0.09 -8.12 16 7 C 0.02 0.20 6.83 -82.85 -0.57 -0.36 16 8 C -0.05 -0.42 9.72 -38.87 -0.38 -0.80 16 9 C -0.14 -0.96 10.14 -39.10 -0.40 -1.35 16 10 C 0.27 2.41 7.85 -16.78 -0.13 2.28 16 11 O -0.47 -3.15 13.56 -18.25 -0.25 -3.40 16 12 N -0.25 -3.05 11.54 30.54 0.35 -2.69 16 13 N -0.18 -2.25 10.73 33.32 0.36 -1.89 16 14 C -0.08 -1.34 1.79 -90.58 -0.16 -1.50 16 15 C -0.13 -2.54 5.22 -26.61 -0.14 -2.68 16 16 C 0.17 4.07 5.31 -3.71 -0.02 4.05 16 17 N -0.59 -14.78 2.99 -172.32 -0.52 -15.29 16 18 C -0.25 -6.90 9.59 -15.06 -0.14 -7.05 16 19 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 20 C 0.00 0.02 4.91 -17.43 -0.09 -0.06 16 21 N -0.90 -26.40 11.19 55.49 0.62 -25.78 16 22 Si 0.90 21.93 29.59 -169.99 -5.03 16.90 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 C 0.15 2.98 6.52 -3.71 -0.02 2.96 16 27 C -0.13 -2.06 5.04 -26.61 -0.13 -2.19 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.82 6.40 -51.93 -0.33 0.49 16 31 H 0.41 5.16 7.73 -40.82 -0.32 4.85 16 32 H 0.17 1.18 7.71 -52.49 -0.40 0.78 16 33 H 0.16 0.54 8.06 -52.49 -0.42 0.11 16 34 H 0.41 0.47 9.06 45.56 0.41 0.88 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 37 H 0.05 0.84 7.41 -51.93 -0.38 0.45 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 40 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 43 H 0.06 0.76 6.36 -51.93 -0.33 0.43 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -33.83 360.76 -6.67 -40.50 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.40 Total: 2.54 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -2.08 Total: 1.13 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.58 Total: -54.97 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.16 Total: -11.52 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.83 -6.67 -40.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996906844.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.146 kcal (2) G-P(sol) polarization free energy of solvation -33.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds