Wall clock time and date at job start Tue Mar 31 2020 12:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47202 * 2 1 4 4 N 1.46498 * 109.47465 * 120.00209 * 2 1 3 5 5 C 1.34777 * 120.00024 * 275.00190 * 4 2 1 6 6 O 1.21579 * 119.99907 * 359.97438 * 5 4 2 7 7 C 1.47535 * 119.99808 * 179.97438 * 5 4 2 8 8 C 1.39804 * 120.97864 * 359.97438 * 7 5 4 9 9 N 1.32189 * 118.97817 * 180.02562 * 8 7 5 10 10 C 1.31946 * 121.13900 * 0.02562 * 9 8 7 11 11 N 1.31718 * 122.19780 * 359.97438 * 10 9 8 12 12 C 1.32774 * 120.87082 * 359.97438 * 11 10 9 13 13 O 1.35284 * 120.61241 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.46856 * 240.00549 * 2 1 3 15 15 C 1.53051 * 109.45844 * 180.02562 * 14 2 1 16 16 C 1.53195 * 109.31033 * 178.59866 * 15 14 2 17 17 N 1.46932 * 108.76597 * 54.65309 * 16 15 14 18 18 C 1.36939 * 120.62906 * 126.40300 * 17 16 15 19 19 H 1.08003 * 119.99591 * 331.83145 * 18 17 16 20 20 C 1.38807 * 119.99872 * 151.82783 * 18 17 16 21 21 N 1.31617 * 120.00334 * 343.07333 * 20 18 17 22 22 Si 1.86811 * 119.99885 * 163.06969 * 20 18 17 23 23 H 1.48495 * 109.46786 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46731 * 119.99888 * 22 20 18 25 25 H 1.48494 * 109.46871 * 240.00376 * 22 20 18 26 26 C 1.46919 * 118.73781 * 306.38523 * 17 16 15 27 27 C 1.53043 * 109.46336 * 59.97028 * 14 2 1 28 28 H 1.09008 * 109.46955 * 299.99702 * 1 2 3 29 29 H 1.09000 * 109.47364 * 59.99591 * 1 2 3 30 30 H 1.09004 * 109.47202 * 179.97438 * 1 2 3 31 31 H 0.96999 * 119.99602 * 94.99539 * 4 2 1 32 32 H 1.07999 * 120.51224 * 0.04710 * 8 7 5 33 33 H 1.08003 * 118.89947 * 179.97438 * 10 9 8 34 34 H 0.96703 * 114.00069 * 90.00211 * 13 12 11 35 35 H 1.09001 * 109.46315 * 299.99497 * 14 2 1 36 36 H 1.08998 * 109.49465 * 298.55804 * 15 14 2 37 37 H 1.09000 * 109.49701 * 58.66201 * 15 14 2 38 38 H 1.09001 * 109.59729 * 294.86621 * 16 15 14 39 39 H 1.08999 * 109.69943 * 174.50523 * 16 15 14 40 40 H 0.96996 * 119.99935 * 180.02562 * 21 20 18 41 41 H 1.08993 * 109.58919 * 293.81474 * 26 17 16 42 42 H 1.09009 * 109.70409 * 173.46352 * 26 17 16 43 43 H 1.08998 * 109.49470 * 301.33329 * 27 14 2 44 44 H 1.08995 * 109.49552 * 61.43578 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8583 1.1614 2.4116 7 6 2.6384 -0.7140 3.5618 8 6 2.9758 -2.0702 3.5223 9 7 3.4115 -2.6541 4.6253 10 6 3.5305 -1.9796 5.7530 11 7 3.2258 -0.7013 5.8418 12 6 2.7812 -0.0319 4.7849 13 8 2.4703 1.2812 4.8818 14 6 2.0399 -0.7211 -1.2493 15 6 3.5704 -0.7216 -1.2488 16 6 4.0772 -1.4747 -2.4828 17 7 3.4746 -0.8768 -3.6820 18 6 4.2604 -0.4512 -4.7196 19 1 5.2716 -0.1218 -4.5312 20 6 3.7575 -0.4433 -6.0133 21 7 2.6776 -1.1374 -6.3038 22 14 4.6132 0.5527 -7.3420 23 1 5.7963 1.2377 -6.7624 24 1 5.0519 -0.3529 -8.4341 25 1 3.6719 1.5643 -7.8858 26 6 2.0128 -0.7445 -3.7470 27 6 1.5290 0.0002 -2.4987 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 2.2490 -1.6318 1.1524 32 1 2.8823 -2.6320 2.6047 33 1 3.8898 -2.4929 6.6328 34 1 3.2100 1.8754 4.6953 35 1 1.6765 -1.7488 -1.2492 36 1 3.9344 0.3055 -1.2742 37 1 3.9337 -1.2147 -0.3472 38 1 3.7903 -2.5240 -2.4141 39 1 5.1628 -1.3958 -2.5412 40 1 2.3264 -1.1321 -7.2080 41 1 1.5575 -1.7342 -3.7814 42 1 1.7338 -0.1828 -4.6385 43 1 0.4393 0.0207 -2.4868 44 1 1.9125 1.0203 -2.5122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997167204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:13 Heat of formation + Delta-G solvation = -7.741848 kcal Electronic energy + Delta-G solvation = -27128.794929 eV Core-core repulsion = 23275.261764 eV Total energy + Delta-G solvation = -3853.533165 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.74290 -39.80894 -38.18588 -37.75545 -35.39763 -33.98846 -33.03070 -32.18053 -31.07450 -29.73814 -29.07837 -25.90673 -25.36040 -24.61398 -23.15855 -22.09180 -21.21907 -20.61488 -19.61638 -19.26140 -18.39033 -17.90975 -16.88463 -16.72035 -16.01667 -15.45582 -15.06430 -14.84614 -14.59663 -14.27164 -14.22095 -13.99367 -13.61640 -13.41178 -13.34461 -12.97949 -12.61010 -12.39167 -12.30000 -11.88186 -11.68295 -11.43679 -11.17125 -11.13727 -11.01753 -10.74976 -10.47369 -10.25552 -10.20978 -10.08504 -10.05247 -9.91886 -9.82939 -9.59555 -9.48569 -9.08136 -8.49500 -6.69118 -5.81353 -3.23719 -0.05439 0.43434 2.57043 2.77619 2.96882 3.33318 3.35393 3.43659 3.45650 3.54804 3.82667 4.28660 4.40794 4.47786 4.74983 4.91009 4.96700 5.14466 5.27581 5.35420 5.47659 5.61668 5.63011 5.65786 5.80703 5.88586 6.01747 6.10190 6.21923 6.28210 6.29910 6.36937 6.44188 6.57308 6.66546 6.72409 6.80177 6.94459 7.00360 7.27913 7.35967 7.47696 7.63327 7.77865 7.98887 8.43129 9.19510 9.82879 10.39296 11.27127 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024290 B = 0.002687 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.458925 B =10416.662018 C =10727.552387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.089 0.911 4 N -0.713 5.713 5 C 0.566 3.434 6 O -0.518 6.518 7 C -0.258 4.258 8 C 0.198 3.802 9 N -0.528 5.528 10 C 0.339 3.661 11 N -0.544 5.544 12 C 0.418 3.582 13 O -0.454 6.454 14 C -0.085 4.085 15 C -0.126 4.126 16 C 0.145 3.855 17 N -0.592 5.592 18 C -0.252 4.252 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.172 3.828 27 C -0.134 4.134 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.397 0.603 32 H 0.176 0.824 33 H 0.207 0.793 34 H 0.415 0.585 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.052 0.948 40 H 0.253 0.747 41 H 0.017 0.983 42 H 0.087 0.913 43 H 0.054 0.946 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.047 -1.602 20.905 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 H 0.107 0.893 4 N -0.364 5.364 5 C 0.350 3.650 6 O -0.395 6.395 7 C -0.267 4.267 8 C 0.032 3.968 9 N -0.243 5.243 10 C 0.052 3.948 11 N -0.269 5.269 12 C 0.230 3.770 13 O -0.263 6.263 14 C -0.104 4.104 15 C -0.165 4.165 16 C 0.019 3.981 17 N -0.315 5.315 18 C -0.381 4.381 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.215 1.215 26 C 0.046 3.954 27 C -0.173 4.173 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.232 0.768 32 H 0.193 0.807 33 H 0.223 0.777 34 H 0.277 0.723 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.106 0.894 43 H 0.073 0.927 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.563 -1.316 21.675 21.771 hybrid contribution 0.578 0.570 -1.505 1.710 sum -0.986 -0.745 20.170 20.208 Atomic orbital electron populations 1.22212 0.95307 1.02080 1.02538 1.21235 0.93869 0.97606 0.83040 0.89332 1.46045 1.66785 1.13928 1.09635 1.17551 0.78439 0.86621 0.82345 1.90828 1.49292 1.14886 1.84456 1.22133 1.10272 0.97783 0.96538 1.23537 0.86308 0.89842 0.97139 1.68449 1.16257 1.39661 0.99935 1.25099 0.88518 0.85501 0.95711 1.68157 1.15039 1.11408 1.32313 1.19494 0.84791 0.86802 0.85947 1.84640 1.38873 1.10972 1.91781 1.21357 0.96438 0.99364 0.93209 1.22051 0.94476 1.01418 0.98567 1.20887 0.96563 0.93892 0.86761 1.44055 1.02053 1.69867 1.15532 1.19219 0.97243 1.36068 0.85593 0.91748 1.25037 0.98410 0.99134 0.97062 1.70032 1.24592 1.40924 1.19192 0.86248 0.78974 0.79830 0.81888 1.20273 1.21742 1.21537 1.20760 0.83261 0.96825 0.94568 1.22270 0.98916 1.00107 0.96033 0.92646 0.90767 0.92579 0.76847 0.80661 0.77680 0.72323 0.91375 0.92297 0.93541 0.96632 0.92951 0.93690 0.96489 0.89445 0.92714 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.13 37.16 0.34 -1.62 16 2 C 0.15 1.86 2.16 -67.93 -0.15 1.71 16 3 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 4 N -0.71 -7.60 4.32 -54.85 -0.24 -7.83 16 5 C 0.57 6.80 7.74 -12.47 -0.10 6.70 16 6 O -0.52 -7.91 14.98 -15.85 -0.24 -8.15 16 7 C -0.26 -2.61 5.92 -104.57 -0.62 -3.23 16 8 C 0.20 1.62 10.80 -16.81 -0.18 1.44 16 9 N -0.53 -4.54 10.42 -14.29 -0.15 -4.69 16 10 C 0.34 2.66 12.27 -92.09 -1.13 1.53 16 11 N -0.54 -5.39 10.45 -14.32 -0.15 -5.54 16 12 C 0.42 4.47 7.85 -16.19 -0.13 4.35 16 13 O -0.45 -4.86 11.81 -38.69 -0.46 -5.31 16 14 C -0.08 -1.23 1.79 -90.57 -0.16 -1.39 16 15 C -0.13 -1.97 5.22 -26.60 -0.14 -2.10 16 16 C 0.15 2.86 6.52 -3.71 -0.02 2.84 16 17 N -0.59 -14.26 2.99 -172.32 -0.52 -14.78 16 18 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 19 H 0.06 1.72 7.89 -52.48 -0.41 1.30 16 20 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 21 N -0.90 -25.71 11.19 55.49 0.62 -25.09 16 22 Si 0.90 21.41 29.59 -169.99 -5.03 16.38 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 C 0.17 3.88 5.30 -3.71 -0.02 3.86 16 27 C -0.13 -2.33 5.04 -26.61 -0.13 -2.46 16 28 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 29 H 0.07 0.89 6.40 -51.93 -0.33 0.56 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.40 3.24 6.52 -40.82 -0.27 2.98 16 32 H 0.18 0.94 6.53 -52.49 -0.34 0.60 16 33 H 0.21 0.82 8.06 -52.48 -0.42 0.40 16 34 H 0.41 2.68 9.06 45.56 0.41 3.10 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.60 7.41 -51.93 -0.38 0.21 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.63 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 2.26 6.07 -51.92 -0.31 1.94 16 43 H 0.05 0.85 6.36 -51.93 -0.33 0.52 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 356.40 15.07 5.37 5.37 Total: -1.00 -33.46 356.40 -8.75 -42.21 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.29 Total: 2.74 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -2.67 Total: 4.68 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.43 Total: -57.93 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.69 Total: -13.46 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.46 -8.75 -42.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997167204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.470 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds