Wall clock time and date at job start Tue Mar 31 2020 12:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46951 * 2 1 4 4 N 1.46502 * 109.46670 * 119.99174 * 2 1 3 5 5 C 1.34774 * 120.00319 * 274.99885 * 4 2 1 6 6 O 1.21588 * 119.99987 * 0.02562 * 5 4 2 7 7 C 1.47579 * 120.00239 * 180.02562 * 5 4 2 8 8 C 1.38037 * 119.72856 * 179.72725 * 7 5 4 9 9 N 1.34883 * 119.94940 * 179.74490 * 8 7 5 10 10 H 0.97000 * 120.31364 * 180.24778 * 9 8 7 11 11 C 1.34953 * 119.38234 * 0.52843 * 9 8 7 12 12 O 1.21862 * 120.27545 * 179.70268 * 11 9 8 13 13 C 1.41792 * 119.45674 * 359.71872 * 11 9 8 14 14 N 1.30597 * 120.03710 * 0.03150 * 13 11 9 15 15 C 1.53000 * 109.47315 * 239.99416 * 2 1 3 16 16 C 1.53035 * 109.45674 * 180.02562 * 15 2 1 17 17 C 1.53192 * 109.30900 * 178.61485 * 16 15 2 18 18 N 1.46922 * 108.77816 * 54.63458 * 17 16 15 19 19 C 1.36941 * 120.63017 * 126.41183 * 18 17 16 20 20 H 1.07997 * 119.99820 * 207.66659 * 19 18 17 21 21 C 1.38810 * 120.00020 * 27.66657 * 19 18 17 22 22 N 1.31615 * 120.00013 * 17.36752 * 21 19 18 23 23 Si 1.86795 * 119.99814 * 197.36706 * 21 19 18 24 24 H 1.48499 * 109.47435 * 90.00376 * 23 21 19 25 25 H 1.48500 * 109.47090 * 210.00129 * 23 21 19 26 26 H 1.48495 * 109.47535 * 329.99678 * 23 21 19 27 27 C 1.46927 * 118.73888 * 306.39278 * 18 17 16 28 28 C 1.53033 * 109.45753 * 59.99838 * 15 2 1 29 29 H 1.08996 * 109.47244 * 60.00504 * 1 2 3 30 30 H 1.09004 * 109.47286 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47624 * 300.00549 * 1 2 3 32 32 H 0.97005 * 119.99553 * 95.00940 * 4 2 1 33 33 H 1.07998 * 120.02643 * 0.02562 * 8 7 5 34 34 H 1.08005 * 119.98304 * 180.02562 * 13 11 9 35 35 H 1.09002 * 109.44688 * 300.03326 * 15 2 1 36 36 H 1.08995 * 109.50193 * 298.56587 * 16 15 2 37 37 H 1.09007 * 109.49838 * 58.66512 * 16 15 2 38 38 H 1.09002 * 109.58798 * 294.84796 * 17 16 15 39 39 H 1.09000 * 109.58774 * 174.42521 * 17 16 15 40 40 H 0.97006 * 120.00037 * 179.97438 * 22 21 19 41 41 H 1.08997 * 109.58787 * 293.81972 * 27 18 17 42 42 H 1.09002 * 109.58807 * 173.39408 * 27 18 17 43 43 H 1.08990 * 109.50187 * 301.33552 * 28 15 2 44 44 H 1.09007 * 109.49526 * 61.43854 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1469 -0.0180 2.3572 6 8 1.8574 1.1616 2.4118 7 6 2.6393 -0.7134 3.5622 8 6 2.7743 -0.0179 4.7468 9 7 3.2190 -0.6503 5.8521 10 1 3.3125 -0.1675 6.6882 11 6 3.5381 -1.9597 5.7825 12 8 3.9466 -2.5458 6.7698 13 6 3.3946 -2.6479 4.5512 14 7 2.9573 -2.0151 3.4957 15 6 2.0400 -0.7214 -1.2492 16 6 3.5704 -0.7217 -1.2484 17 6 4.0773 -1.4747 -2.4825 18 7 3.4746 -0.8772 -3.6818 19 6 4.2604 -0.4518 -4.7195 20 1 3.9214 0.3484 -5.3607 21 6 5.4926 -1.0489 -4.9471 22 7 5.7654 -2.2198 -4.4116 23 14 6.7635 -0.1907 -6.0137 24 1 7.6193 0.6756 -5.1638 25 1 7.6074 -1.2067 -6.6926 26 1 6.0744 0.6411 -7.0326 27 6 2.0127 -0.7453 -3.7468 28 6 1.5298 0.0001 -2.4985 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.2490 -1.6317 1.1528 33 1 2.5198 1.0308 4.7898 34 1 3.6472 -3.6960 4.4860 35 1 1.6760 -1.7488 -1.2490 36 1 3.9345 0.3053 -1.2739 37 1 3.9337 -1.2147 -0.3467 38 1 3.7907 -2.5241 -2.4136 39 1 5.1628 -1.3934 -2.5398 40 1 6.6264 -2.6373 -4.5710 41 1 1.5576 -1.7351 -3.7809 42 1 1.7359 -0.1826 -4.6383 43 1 0.4401 0.0212 -2.4870 44 1 1.9138 1.0202 -2.5119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997279971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:20 Heat of formation + Delta-G solvation = -13.985070 kcal Electronic energy + Delta-G solvation = -26936.462003 eV Core-core repulsion = 23082.658112 eV Total energy + Delta-G solvation = -3853.803891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.17531 -39.92282 -38.21316 -37.59556 -35.75263 -35.29072 -32.88991 -31.37171 -30.46937 -30.19593 -28.74111 -25.91558 -25.50482 -24.93255 -23.22037 -21.97721 -21.63742 -20.42109 -19.66014 -18.91480 -18.81999 -17.46351 -16.72580 -16.48872 -16.36376 -15.93559 -15.18835 -15.03046 -14.77573 -14.55886 -14.07662 -13.72542 -13.48725 -13.40492 -13.32756 -13.02826 -12.76639 -12.36345 -12.26534 -12.18927 -11.96491 -11.65619 -11.49282 -11.19178 -10.94752 -10.68646 -10.42736 -10.35128 -10.17814 -10.13427 -9.88195 -9.84643 -9.49084 -9.43551 -9.01907 -8.69385 -8.43765 -6.64030 -5.76028 -3.17790 0.01385 0.80958 2.01421 2.56528 3.06170 3.37357 3.39605 3.46636 3.47504 3.69779 3.76921 4.28012 4.52148 4.53762 4.80900 4.97854 5.23414 5.35476 5.41188 5.43582 5.53400 5.65322 5.66495 5.76234 5.83910 5.86082 6.00006 6.11335 6.13815 6.29553 6.35315 6.47482 6.60148 6.65202 6.72756 6.81356 6.87385 6.99520 7.02232 7.18448 7.41291 7.56933 7.69454 7.82453 8.14298 8.48222 9.24681 9.88527 10.45005 11.32251 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016211 B = 0.002912 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.837496 B = 9612.027690 C =10654.366850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.087 0.913 4 N -0.697 5.697 5 C 0.588 3.412 6 O -0.549 6.549 7 C -0.074 4.074 8 C 0.173 3.827 9 N -0.587 5.587 10 H 0.425 0.575 11 C 0.477 3.523 12 O -0.522 6.522 13 C 0.045 3.955 14 N -0.370 5.370 15 C -0.084 4.084 16 C -0.134 4.134 17 C 0.172 3.828 18 N -0.593 5.593 19 C -0.251 4.251 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.146 3.854 28 C -0.125 4.125 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.410 0.590 33 H 0.191 0.809 34 H 0.196 0.804 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.017 0.983 39 H 0.086 0.914 40 H 0.253 0.747 41 H 0.017 0.983 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.118 2.910 18.916 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.105 0.895 4 N -0.346 5.346 5 C 0.373 3.627 6 O -0.428 6.428 7 C -0.198 4.198 8 C 0.037 3.963 9 N -0.220 5.220 10 H 0.265 0.735 11 C 0.273 3.727 12 O -0.397 6.397 13 C -0.146 4.146 14 N -0.085 5.085 15 C -0.103 4.103 16 C -0.173 4.173 17 C 0.046 3.954 18 N -0.315 5.315 19 C -0.380 4.380 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.731 3.269 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.019 3.981 28 C -0.165 4.165 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.247 0.753 33 H 0.208 0.792 34 H 0.212 0.788 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.035 0.965 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.078 2.941 18.571 20.879 hybrid contribution 1.005 0.555 0.629 1.309 sum -8.073 3.496 19.200 21.119 Atomic orbital electron populations 1.22211 0.95519 1.02017 1.02272 1.21228 0.93620 0.97609 0.83560 0.89472 1.45881 1.65052 1.14789 1.08867 1.17167 0.77623 0.85682 0.82262 1.90800 1.52122 1.14990 1.84869 1.20515 1.13577 0.90949 0.94747 1.23223 0.87678 1.00132 0.85238 1.43694 1.52591 1.12503 1.13184 0.73471 1.18822 0.80208 0.81296 0.92403 1.91014 1.45682 1.65202 1.37795 1.24787 1.01703 1.02056 0.86076 1.67714 1.02486 1.07454 1.30860 1.21333 0.97305 0.99108 0.92603 1.22222 0.93548 1.01533 1.00007 1.20762 0.99416 0.92689 0.82560 1.44067 0.99532 1.72025 1.15924 1.19202 0.99154 1.12084 1.07605 0.91726 1.25021 1.00042 0.95331 0.99339 1.70035 1.22658 1.14033 1.48003 0.86304 0.81777 0.78750 0.80032 1.21516 1.21819 1.20475 1.20893 0.86109 0.96422 0.94660 1.22081 0.98703 0.99989 0.95727 0.91035 0.92570 0.92714 0.75349 0.79233 0.78768 0.91358 0.92773 0.93349 0.96539 0.89591 0.93705 0.96543 0.92844 0.92668 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.13 37.16 0.34 -1.56 16 2 C 0.14 1.92 2.16 -67.93 -0.15 1.78 16 3 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 4 N -0.70 -8.66 4.35 -54.83 -0.24 -8.89 16 5 C 0.59 7.29 7.75 -12.45 -0.10 7.20 16 6 O -0.55 -7.98 15.94 5.29 0.08 -7.89 16 7 C -0.07 -0.73 6.71 -83.11 -0.56 -1.29 16 8 C 0.17 1.15 10.77 -16.28 -0.18 0.98 16 9 N -0.59 -3.46 5.28 -14.20 -0.08 -3.54 16 10 H 0.43 1.28 8.92 -40.82 -0.36 0.92 16 11 C 0.48 4.26 7.74 -14.82 -0.11 4.15 16 12 O -0.52 -6.30 17.95 5.04 0.09 -6.21 16 13 C 0.04 0.38 11.23 -16.72 -0.19 0.19 16 14 N -0.37 -3.65 9.62 -9.34 -0.09 -3.74 16 15 C -0.08 -1.30 1.79 -90.58 -0.16 -1.46 16 16 C -0.13 -2.45 5.22 -26.61 -0.14 -2.59 16 17 C 0.17 4.00 5.31 -3.71 -0.02 3.98 16 18 N -0.59 -14.60 2.99 -172.32 -0.52 -15.12 16 19 C -0.25 -6.85 9.59 -15.06 -0.14 -6.99 16 20 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 21 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 22 N -0.90 -26.10 11.19 55.49 0.62 -25.48 16 23 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.15 2.95 6.52 -3.71 -0.02 2.93 16 28 C -0.13 -2.04 5.04 -26.61 -0.13 -2.17 16 29 H 0.07 0.79 6.40 -51.93 -0.33 0.46 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.41 4.84 7.70 -40.82 -0.31 4.52 16 33 H 0.19 0.83 7.58 -52.49 -0.40 0.44 16 34 H 0.20 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.81 7.41 -51.92 -0.38 0.43 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 2.28 6.04 -51.93 -0.31 1.97 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 43 H 0.05 0.75 6.36 -51.93 -0.33 0.42 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 359.26 15.07 5.41 5.41 Total: -1.00 -33.72 359.26 -7.56 -41.28 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.17 Total: 2.39 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -1.65 Total: 5.08 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.30 Total: -56.77 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.17 Total: -14.10 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.72 -7.56 -41.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997279971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.299 kcal (2) G-P(sol) polarization free energy of solvation -33.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds