Wall clock time and date at job start Tue Mar 31 2020 12:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46646 * 2 1 4 4 N 1.46502 * 109.47071 * 240.00356 * 2 1 3 5 5 C 1.34768 * 120.00012 * 84.99943 * 4 2 1 6 6 O 1.21542 * 120.00444 * 359.97438 * 5 4 2 7 7 C 1.47939 * 120.00276 * 180.02562 * 5 4 2 8 8 C 1.39974 * 120.12432 * 180.02562 * 7 5 4 9 9 C 1.38415 * 117.97561 * 179.97438 * 8 7 5 10 10 C 1.39350 * 118.03486 * 0.02562 * 9 8 7 11 11 O 1.35516 * 120.03110 * 179.97438 * 10 9 8 12 12 N 1.32683 * 119.94007 * 359.97438 * 10 9 8 13 13 N 1.28353 * 122.19817 * 359.70666 * 12 10 9 14 14 C 1.53002 * 109.46882 * 120.00175 * 2 1 3 15 15 C 1.53047 * 109.45489 * 179.97438 * 14 2 1 16 16 C 1.53167 * 109.32342 * 181.38790 * 15 14 2 17 17 N 1.46924 * 108.76511 * 305.35609 * 16 15 14 18 18 C 1.36944 * 120.62885 * 233.62893 * 17 16 15 19 19 H 1.08001 * 119.99893 * 152.60039 * 18 17 16 20 20 C 1.38804 * 120.00084 * 332.60549 * 18 17 16 21 21 N 1.31621 * 120.00078 * 159.35740 * 20 18 17 22 22 Si 1.86799 * 119.99938 * 339.36118 * 20 18 17 23 23 H 1.48502 * 109.47406 * 92.90053 * 22 20 18 24 24 H 1.48504 * 109.47139 * 212.90194 * 22 20 18 25 25 H 1.48494 * 109.47265 * 332.89921 * 22 20 18 26 26 C 1.46927 * 118.74200 * 53.61048 * 17 16 15 27 27 C 1.53029 * 109.45981 * 300.02620 * 14 2 1 28 28 H 1.09005 * 109.46967 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47546 * 299.99876 * 1 2 3 30 30 H 1.09001 * 109.47379 * 59.99855 * 1 2 3 31 31 H 0.96998 * 119.99584 * 265.00009 * 4 2 1 32 32 H 1.08003 * 121.01125 * 359.97438 * 8 7 5 33 33 H 1.07996 * 120.98321 * 179.97438 * 9 8 7 34 34 H 0.96700 * 113.99629 * 89.99502 * 11 10 9 35 35 H 1.08994 * 109.45780 * 60.00278 * 14 2 1 36 36 H 1.09001 * 109.49978 * 301.32138 * 15 14 2 37 37 H 1.08999 * 109.49526 * 61.42229 * 15 14 2 38 38 H 1.08992 * 109.58991 * 185.57128 * 16 15 14 39 39 H 1.09004 * 109.70724 * 65.20613 * 16 15 14 40 40 H 0.96998 * 119.99967 * 179.97438 * 21 20 18 41 41 H 1.09003 * 109.58754 * 186.60098 * 26 17 16 42 42 H 1.09004 * 109.70203 * 66.25247 * 26 17 16 43 43 H 1.09002 * 109.50118 * 298.57955 * 27 14 2 44 44 H 1.09006 * 109.50157 * 58.68191 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8575 1.1610 -2.4118 7 6 2.6396 -0.7156 -3.5652 8 6 2.7747 -0.0196 -4.7721 9 6 3.2400 -0.7155 -5.8744 10 6 3.5448 -2.0660 -5.7156 11 8 4.0028 -2.7862 -6.7681 12 7 3.3862 -2.6460 -4.5328 13 7 2.9607 -2.0024 -3.5070 14 6 2.0399 -0.7213 1.2493 15 6 3.5704 -0.7217 1.2486 16 6 4.0776 -1.4745 2.4824 17 7 3.4750 -0.8767 3.6816 18 6 4.2610 -0.4502 4.7187 19 1 3.9199 0.3472 5.3623 20 6 5.4961 -1.0427 4.9428 21 7 6.4139 -0.4075 5.6402 22 14 5.8555 -2.7417 4.2544 23 1 6.5067 -2.6101 2.9263 24 1 6.7609 -3.4693 5.1797 25 1 4.5848 -3.4963 4.1101 26 6 2.0131 -0.7447 3.7468 27 6 1.5291 -0.0001 2.4986 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 2.2490 -1.6317 -1.1527 32 1 2.5236 1.0286 -4.8411 33 1 3.3624 -0.2266 -6.8295 34 1 4.9656 -2.7825 -6.8580 35 1 1.6765 -1.7489 1.2490 36 1 3.9338 -1.2150 0.3471 37 1 3.9344 0.3054 1.2738 38 1 5.1630 -1.3931 2.5395 39 1 3.7928 -2.5245 2.4151 40 1 7.2769 -0.8218 5.7971 41 1 1.7364 -0.1818 4.6383 42 1 1.5561 -1.7336 3.7827 43 1 1.9125 1.0202 2.5120 44 1 0.4393 0.0203 2.4869 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997464130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:03 Heat of formation + Delta-G solvation = 6.232534 kcal Electronic energy + Delta-G solvation = -26967.072830 eV Core-core repulsion = 23114.145640 eV Total energy + Delta-G solvation = -3852.927190 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.75134 -39.99380 -38.37034 -37.94391 -35.64314 -33.72373 -33.17232 -32.14373 -31.08752 -30.50154 -29.26338 -25.97817 -25.40157 -24.93105 -23.31275 -22.25260 -21.56148 -20.62019 -19.73278 -19.56376 -18.50936 -17.98590 -16.77896 -16.65664 -16.14045 -15.61145 -15.30531 -14.98232 -14.60462 -14.31355 -14.18741 -13.90596 -13.80834 -13.69641 -13.34653 -12.93899 -12.84911 -12.62449 -12.39809 -12.31846 -12.08957 -11.73604 -11.50051 -11.21829 -10.89146 -10.79405 -10.50548 -10.47196 -10.36859 -10.24641 -10.09877 -10.05869 -9.83001 -9.65326 -9.42650 -9.14960 -8.58405 -6.94445 -5.92641 -3.27930 -0.13666 0.18736 2.20258 2.67012 2.87130 3.18701 3.34219 3.50363 3.53353 3.55444 4.03518 4.15842 4.38708 4.42104 4.55398 4.77733 4.98474 5.03921 5.06182 5.22419 5.25094 5.38579 5.41486 5.44455 5.57717 5.68358 5.80427 5.87758 5.98226 6.09672 6.11545 6.21584 6.31607 6.38912 6.46917 6.53543 6.66578 6.68912 6.70243 6.74055 6.99754 7.28182 7.87640 7.99487 8.02379 8.35420 8.97326 9.75052 10.13255 11.23502 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015291 B = 0.003193 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.728178 B = 8765.990655 C = 9998.375801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.092 0.908 4 N -0.695 5.695 5 C 0.576 3.424 6 O -0.529 6.529 7 C 0.017 3.983 8 C -0.048 4.048 9 C -0.140 4.140 10 C 0.273 3.727 11 O -0.473 6.473 12 N -0.254 5.254 13 N -0.180 5.180 14 C -0.086 4.086 15 C -0.128 4.128 16 C 0.126 3.874 17 N -0.606 5.606 18 C -0.258 4.258 19 H 0.085 0.915 20 C 0.022 3.978 21 N -0.910 5.910 22 Si 0.883 3.117 23 H -0.289 1.289 24 H -0.304 1.304 25 H -0.271 1.271 26 C 0.149 3.851 27 C -0.127 4.127 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.411 0.589 32 H 0.169 0.831 33 H 0.164 0.836 34 H 0.411 0.589 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.024 0.976 40 H 0.262 0.738 41 H 0.063 0.937 42 H 0.022 0.978 43 H 0.065 0.935 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.848 -0.726 -23.901 25.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.110 0.890 4 N -0.345 5.345 5 C 0.359 3.641 6 O -0.404 6.404 7 C -0.130 4.130 8 C -0.077 4.077 9 C -0.170 4.170 10 C 0.088 3.912 11 O -0.279 6.279 12 N -0.107 5.107 13 N -0.030 5.030 14 C -0.105 4.105 15 C -0.167 4.167 16 C 0.001 3.999 17 N -0.330 5.330 18 C -0.386 4.386 19 H 0.103 0.897 20 C -0.177 4.177 21 N -0.553 5.553 22 Si 0.714 3.286 23 H -0.217 1.217 24 H -0.232 1.232 25 H -0.196 1.196 26 C 0.023 3.977 27 C -0.167 4.167 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.247 0.753 32 H 0.186 0.814 33 H 0.182 0.818 34 H 0.270 0.730 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.040 0.960 43 H 0.084 0.916 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.335 -1.355 -23.093 24.945 hybrid contribution 0.959 -0.189 -1.359 1.674 sum -8.376 -1.544 -24.452 25.893 Atomic orbital electron populations 1.22217 0.95090 1.02218 1.02582 1.21270 0.93969 0.97734 0.83123 0.89025 1.46007 1.64689 1.14853 1.08989 1.17400 0.78406 0.86019 0.82306 1.90818 1.50531 1.14676 1.84420 1.23013 1.00543 0.93278 0.96196 1.22441 0.92010 1.02770 0.90443 1.22594 0.99495 0.93679 1.01242 1.21067 0.94319 0.88108 0.87667 1.84730 1.28611 1.72397 1.42168 1.73118 1.11180 1.30264 0.96174 1.73298 1.04537 1.05782 1.19395 1.21349 0.96680 0.99464 0.93046 1.22058 0.94121 1.01972 0.98599 1.21314 0.98069 0.94444 0.86111 1.44361 1.00979 1.72393 1.15276 1.18930 0.98770 1.13787 1.07154 0.89740 1.25280 0.96478 0.98133 0.97796 1.69842 1.04805 1.37207 1.43442 0.86943 0.77644 0.87005 0.77011 1.21702 1.23239 1.19567 1.20911 0.84511 0.96851 0.95439 1.22083 0.99138 1.00285 0.95147 0.92423 0.90734 0.92528 0.75250 0.81399 0.81845 0.72955 0.91065 0.92916 0.91626 0.91073 0.95794 0.92828 0.91832 0.96041 0.91626 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.13 37.16 0.34 -1.46 16 2 C 0.14 1.81 2.16 -67.93 -0.15 1.66 16 3 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 4 N -0.70 -8.44 4.35 -54.72 -0.24 -8.67 16 5 C 0.58 7.29 7.77 -12.29 -0.10 7.19 16 6 O -0.53 -7.82 16.05 5.33 0.09 -7.73 16 7 C 0.02 0.18 6.83 -82.84 -0.57 -0.38 16 8 C -0.05 -0.39 9.72 -38.87 -0.38 -0.77 16 9 C -0.14 -0.89 10.14 -39.10 -0.40 -1.29 16 10 C 0.27 2.29 7.85 -16.77 -0.13 2.16 16 11 O -0.47 -2.97 13.56 -18.24 -0.25 -3.22 16 12 N -0.25 -2.91 11.54 30.55 0.35 -2.56 16 13 N -0.18 -2.15 10.73 33.32 0.36 -1.80 16 14 C -0.09 -1.24 1.79 -90.58 -0.16 -1.40 16 15 C -0.13 -2.21 5.22 -26.62 -0.14 -2.35 16 16 C 0.13 2.72 4.21 -3.72 -0.02 2.71 16 17 N -0.61 -14.24 2.77 -172.34 -0.48 -14.71 16 18 C -0.26 -7.22 10.03 -15.06 -0.15 -7.37 16 19 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 20 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 21 N -0.91 -28.10 13.97 55.49 0.78 -27.32 16 22 Si 0.88 22.58 24.34 -169.99 -4.14 18.45 16 23 H -0.29 -7.16 6.62 56.52 0.37 -6.79 16 24 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 25 H -0.27 -6.78 6.63 56.52 0.37 -6.40 16 26 C 0.15 2.83 6.52 -3.71 -0.02 2.80 16 27 C -0.13 -1.93 5.04 -26.62 -0.13 -2.06 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.77 6.40 -51.93 -0.33 0.43 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.41 4.69 7.73 -40.82 -0.32 4.38 16 32 H 0.17 1.11 7.71 -52.48 -0.40 0.70 16 33 H 0.16 0.48 8.06 -52.49 -0.42 0.05 16 34 H 0.41 0.46 9.06 45.56 0.41 0.87 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.82 7.41 -51.93 -0.38 0.43 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.07 1.71 4.49 -51.93 -0.23 1.48 16 39 H 0.02 0.51 7.07 -51.93 -0.37 0.15 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.06 0.76 6.36 -51.93 -0.33 0.43 16 LS Contribution 354.34 15.07 5.34 5.34 Total: -1.00 -34.87 354.34 -5.61 -40.48 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.33 Total: 1.76 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.09 Total: -0.01 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.77 Total: -55.07 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.16 Total: -10.95 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.14 Total: 18.45 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.87 -5.61 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997464130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.716 kcal (2) G-P(sol) polarization free energy of solvation -34.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds