Wall clock time and date at job start Tue Mar 31 2020 12:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46794 * 2 1 4 4 N 1.46498 * 109.47227 * 240.00186 * 2 1 3 5 5 C 1.34777 * 120.00229 * 84.99444 * 4 2 1 6 6 O 1.21521 * 119.99732 * 0.02562 * 5 4 2 7 7 C 1.48142 * 120.00216 * 179.72518 * 5 4 2 8 8 C 1.39898 * 121.12037 * 359.97438 * 7 5 4 9 9 N 1.31767 * 119.78243 * 179.75301 * 8 7 5 10 10 N 1.28274 * 122.42210 * 0.54433 * 9 8 7 11 11 C 1.32273 * 122.43751 * 359.71799 * 10 9 8 12 12 O 1.35696 * 120.08459 * 180.02562 * 11 10 9 13 13 C 1.39240 * 119.83920 * 359.97438 * 11 10 9 14 14 C 1.52994 * 109.47051 * 119.99840 * 2 1 3 15 15 C 1.53041 * 109.46254 * 60.07361 * 14 2 1 16 16 C 1.53188 * 109.31590 * 178.61438 * 15 14 2 17 17 N 1.46921 * 108.77574 * 54.62897 * 16 15 14 18 18 C 1.36941 * 120.62712 * 126.41862 * 17 16 15 19 19 H 1.08006 * 119.99860 * 207.65818 * 18 17 16 20 20 C 1.38808 * 120.00407 * 27.66303 * 18 17 16 21 21 N 1.31624 * 120.00012 * 17.36331 * 20 18 17 22 22 Si 1.86801 * 120.00251 * 197.36889 * 20 18 17 23 23 H 1.48505 * 109.47102 * 59.99659 * 22 20 18 24 24 H 1.48501 * 109.47326 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47007 * 299.99976 * 22 20 18 26 26 C 1.46928 * 118.74199 * 306.39048 * 17 16 15 27 27 C 1.53041 * 109.46504 * 300.00080 * 14 2 1 28 28 H 1.09007 * 109.46983 * 299.99949 * 1 2 3 29 29 H 1.08998 * 109.47572 * 59.99863 * 1 2 3 30 30 H 1.08997 * 109.47324 * 180.02562 * 1 2 3 31 31 H 0.96998 * 119.99762 * 265.00476 * 4 2 1 32 32 H 1.07993 * 120.11102 * 359.97438 * 8 7 5 33 33 H 0.96699 * 114.00931 * 269.98060 * 12 11 10 34 34 H 1.07992 * 121.12446 * 179.97438 * 13 11 10 35 35 H 1.09011 * 109.46033 * 180.02562 * 14 2 1 36 36 H 1.09002 * 109.49129 * 298.56358 * 15 14 2 37 37 H 1.09004 * 109.49985 * 58.65327 * 15 14 2 38 38 H 1.09002 * 109.58573 * 294.83938 * 16 15 14 39 39 H 1.09003 * 109.58873 * 174.41872 * 16 15 14 40 40 H 0.96995 * 119.99859 * 180.02562 * 21 20 18 41 41 H 1.08994 * 109.58549 * 293.82670 * 26 17 16 42 42 H 1.09003 * 109.58613 * 173.39816 * 26 17 16 43 43 H 1.08999 * 109.49530 * 301.33629 * 27 14 2 44 44 H 1.08997 * 109.49530 * 61.39794 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8583 1.1609 -2.4116 7 6 2.6466 -0.7150 -3.5652 8 6 2.9921 -2.0701 -3.5274 9 7 3.4292 -2.6649 -4.6189 10 7 3.5643 -2.0441 -5.7333 11 6 3.2699 -0.7620 -5.8714 12 8 3.4307 -0.1528 -7.0732 13 6 2.7937 -0.0391 -4.7808 14 6 2.0399 -0.7212 1.2492 15 6 1.5312 -2.1646 1.2481 16 6 2.0720 -2.8934 2.4822 17 7 1.7086 -2.1263 3.6815 18 6 1.0456 -2.7260 4.7188 19 1 0.4035 -2.1401 5.3600 20 6 1.1986 -4.0867 4.9463 21 7 2.2122 -4.7336 4.4110 22 14 -0.0340 -5.0000 6.0122 23 1 -1.3875 -4.8866 5.4117 24 1 0.3507 -6.4317 6.0979 25 1 -0.0455 -4.4076 7.3739 26 6 2.0706 -0.7039 3.7469 27 6 1.5297 0.0004 2.4987 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 2.2490 -1.6317 -1.1526 32 1 2.8977 -2.6278 -2.6074 33 1 4.3057 0.2380 -7.2024 34 1 2.5473 1.0086 -4.8701 35 1 3.1301 -0.7207 1.2493 36 1 0.4415 -2.1661 1.2732 37 1 1.8755 -2.6710 0.3464 38 1 3.1570 -2.9722 2.4137 39 1 1.6341 -3.8899 2.5392 40 1 2.3190 -5.6845 4.5697 41 1 3.1555 -0.6042 3.7815 42 1 1.6318 -0.2558 4.6384 43 1 1.8731 1.0348 2.4871 44 1 0.4400 -0.0210 2.5116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997627496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:10 Heat of formation + Delta-G solvation = 3.815048 kcal Electronic energy + Delta-G solvation = -26895.410537 eV Core-core repulsion = 23042.378517 eV Total energy + Delta-G solvation = -3853.032020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.77384 -40.09265 -38.25592 -38.02710 -35.52008 -33.92965 -32.99047 -31.90022 -31.00321 -30.09257 -28.91275 -26.18383 -25.36348 -24.94951 -23.40793 -22.50501 -21.42162 -20.56512 -19.53189 -18.77319 -18.57272 -17.70121 -16.83264 -16.69760 -16.17817 -15.95792 -15.38248 -14.89462 -14.54900 -14.37335 -14.28711 -13.96047 -13.82883 -13.62247 -13.13195 -12.87045 -12.73189 -12.57558 -12.29220 -11.83687 -11.75757 -11.59817 -11.28174 -10.92789 -10.76172 -10.74527 -10.73572 -10.57783 -10.27393 -10.26192 -10.22952 -9.95786 -9.86152 -9.66727 -9.45499 -9.25373 -8.50678 -6.72372 -5.83527 -3.25384 -0.18445 0.24660 2.31694 2.61624 2.87486 3.14596 3.35291 3.41579 3.42512 3.71088 3.88419 4.12793 4.31909 4.46008 4.49561 4.87042 5.03435 5.06108 5.19648 5.28262 5.33381 5.41441 5.44282 5.53234 5.61359 5.72621 5.87880 6.00128 6.05101 6.16009 6.24064 6.28322 6.44027 6.47545 6.63301 6.67027 6.74618 6.77443 6.93219 7.16458 7.29750 7.58393 7.75181 7.79075 8.11086 8.40522 9.17079 9.80517 10.36763 11.25000 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021355 B = 0.002706 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.880227 B =10346.289004 C =11212.071387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.145 3.855 3 H 0.087 0.913 4 N -0.706 5.706 5 C 0.560 3.440 6 O -0.526 6.526 7 C -0.112 4.112 8 C 0.061 3.939 9 N -0.210 5.210 10 N -0.244 5.244 11 C 0.256 3.744 12 O -0.470 6.470 13 C -0.077 4.077 14 C -0.087 4.087 15 C -0.138 4.138 16 C 0.171 3.829 17 N -0.591 5.591 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.145 3.855 27 C -0.126 4.126 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.402 0.598 32 H 0.182 0.818 33 H 0.408 0.592 34 H 0.169 0.831 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.041 0.959 38 H 0.017 0.983 39 H 0.088 0.912 40 H 0.254 0.746 41 H 0.017 0.983 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.204 9.741 -16.773 19.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.042 3.958 3 H 0.105 0.895 4 N -0.358 5.358 5 C 0.344 3.656 6 O -0.403 6.403 7 C -0.126 4.126 8 C -0.104 4.104 9 N -0.053 5.053 10 N -0.096 5.096 11 C 0.070 3.930 12 O -0.276 6.276 13 C -0.108 4.108 14 C -0.106 4.106 15 C -0.177 4.177 16 C 0.045 3.955 17 N -0.314 5.314 18 C -0.382 4.382 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.731 3.269 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.019 3.981 27 C -0.165 4.165 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.239 0.761 32 H 0.199 0.801 33 H 0.267 0.733 34 H 0.186 0.814 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.035 0.965 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.034 0.966 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.009 8.925 -17.614 19.848 hybrid contribution -0.501 0.454 1.189 1.368 sum 1.508 9.379 -16.425 18.974 Atomic orbital electron populations 1.22245 0.94924 1.02813 1.02247 1.21243 0.94548 0.96892 0.83121 0.89524 1.46174 1.65708 1.14471 1.09476 1.17854 0.78515 0.86527 0.82729 1.90802 1.49890 1.15028 1.84578 1.21346 1.00452 0.95085 0.95705 1.24685 0.93615 0.92129 1.00016 1.73115 1.09310 1.28599 0.94321 1.72825 1.11883 1.07787 1.17129 1.20792 0.96136 0.90080 0.85987 1.84817 1.38992 1.73029 1.30770 1.22789 0.94595 1.03042 0.90342 1.21350 1.00184 0.96396 0.92659 1.22325 1.01272 0.94332 0.99794 1.20761 0.96344 0.95863 0.82528 1.44033 1.66800 1.04689 1.15885 1.19142 1.19363 0.91994 1.07747 0.91743 1.25025 0.97097 0.98235 0.99269 1.70017 1.27838 1.08979 1.47925 0.86385 0.81259 0.78856 0.80361 1.21056 1.21634 1.20889 1.20893 0.96257 0.86327 0.94656 1.22074 1.01190 0.97667 0.95600 0.90835 0.92887 0.91706 0.76054 0.80065 0.73268 0.81368 0.91217 0.91844 0.94018 0.96530 0.89387 0.93569 0.96557 0.92717 0.92970 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 8.78 37.16 0.33 -1.67 16 2 C 0.15 1.77 2.40 -67.94 -0.16 1.61 16 3 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 4 N -0.71 -7.55 4.96 -54.66 -0.27 -7.82 16 5 C 0.56 6.38 7.77 -12.19 -0.09 6.29 16 6 O -0.53 -7.53 16.15 5.35 0.09 -7.44 16 7 C -0.11 -1.08 5.92 -104.60 -0.62 -1.70 16 8 C 0.06 0.56 10.84 -16.96 -0.18 0.38 16 9 N -0.21 -2.40 11.48 30.79 0.35 -2.04 16 10 N -0.24 -2.81 11.50 30.49 0.35 -2.46 16 11 C 0.26 2.39 7.85 -16.99 -0.13 2.26 16 12 O -0.47 -3.38 13.57 -18.79 -0.26 -3.64 16 13 C -0.08 -0.69 9.72 -38.60 -0.38 -1.06 16 14 C -0.09 -1.22 2.14 -90.58 -0.19 -1.42 16 15 C -0.14 -2.21 4.81 -26.61 -0.13 -2.34 16 16 C 0.17 3.72 5.31 -3.72 -0.02 3.70 16 17 N -0.59 -13.89 2.99 -172.32 -0.52 -14.40 16 18 C -0.25 -6.66 9.59 -15.06 -0.14 -6.80 16 19 H 0.06 1.67 7.89 -52.48 -0.41 1.26 16 20 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 21 N -0.90 -25.31 11.19 55.49 0.62 -24.68 16 22 Si 0.90 21.11 29.59 -169.99 -5.03 16.08 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 C 0.15 2.82 6.52 -3.71 -0.02 2.80 16 27 C -0.13 -1.92 4.97 -26.61 -0.13 -2.06 16 28 H 0.07 0.88 6.46 -51.93 -0.34 0.55 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.80 6.46 -51.93 -0.34 0.47 16 31 H 0.40 3.63 4.99 -40.82 -0.20 3.43 16 32 H 0.18 1.19 6.53 -52.49 -0.34 0.85 16 33 H 0.41 0.73 9.06 45.56 0.41 1.14 16 34 H 0.17 1.31 7.79 -52.49 -0.41 0.90 16 35 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 36 H 0.06 1.07 6.51 -51.93 -0.34 0.73 16 37 H 0.04 0.55 6.46 -51.93 -0.34 0.22 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 2.19 6.04 -51.93 -0.31 1.88 16 40 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.05 1.06 7.93 -51.93 -0.41 0.64 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 1.03 6.51 -51.93 -0.34 0.69 16 LS Contribution 353.50 15.07 5.33 5.33 Total: -1.00 -32.61 353.50 -6.31 -38.92 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.01 Total: 2.21 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.97 Total: -0.04 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.54 Total: -51.41 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.17 Total: -11.08 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.61 -6.31 -38.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997627496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.734 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds