Wall clock time and date at job start Tue Mar 31 2020 12:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46854 * 2 1 4 4 N 1.46497 * 109.47057 * 239.99921 * 2 1 3 5 5 C 1.34778 * 120.00302 * 84.99814 * 4 2 1 6 6 O 1.21596 * 119.99715 * 359.97438 * 5 4 2 7 7 C 1.47536 * 120.00429 * 179.97438 * 5 4 2 8 8 C 1.39804 * 120.97609 * 359.97438 * 7 5 4 9 9 N 1.32186 * 118.97667 * 179.73135 * 8 7 5 10 10 C 1.31937 * 121.14387 * 0.24646 * 9 8 7 11 11 N 1.31727 * 122.19098 * 0.02562 * 10 9 8 12 12 C 1.32766 * 120.87773 * 359.97438 * 11 10 9 13 13 O 1.35271 * 120.61796 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47503 * 119.99610 * 2 1 3 15 15 C 1.53043 * 109.45887 * 60.06869 * 14 2 1 16 16 C 1.53196 * 109.31390 * 178.61526 * 15 14 2 17 17 N 1.46933 * 108.77354 * 54.63460 * 16 15 14 18 18 C 1.36933 * 120.62903 * 126.41501 * 17 16 15 19 19 H 1.07997 * 120.00103 * 207.66817 * 18 17 16 20 20 C 1.38818 * 119.99931 * 27.66233 * 18 17 16 21 21 N 1.31620 * 120.00162 * 17.36902 * 20 18 17 22 22 Si 1.86796 * 119.99984 * 197.36650 * 20 18 17 23 23 H 1.48510 * 109.47311 * 60.00039 * 22 20 18 24 24 H 1.48497 * 109.47447 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47370 * 300.00397 * 22 20 18 26 26 C 1.46918 * 118.73773 * 306.39308 * 17 16 15 27 27 C 1.53045 * 109.45979 * 300.00261 * 14 2 1 28 28 H 1.08999 * 109.47499 * 60.00759 * 1 2 3 29 29 H 1.09006 * 109.46854 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47089 * 300.00077 * 1 2 3 31 31 H 0.97002 * 120.00301 * 264.99071 * 4 2 1 32 32 H 1.08001 * 120.51336 * 0.02562 * 8 7 5 33 33 H 1.07998 * 118.90077 * 179.97438 * 10 9 8 34 34 H 0.96702 * 113.99849 * 89.99719 * 13 12 11 35 35 H 1.09000 * 109.46280 * 180.02562 * 14 2 1 36 36 H 1.09001 * 109.49978 * 298.56557 * 15 14 2 37 37 H 1.08997 * 109.49417 * 58.66499 * 15 14 2 38 38 H 1.09002 * 109.58520 * 294.85267 * 16 15 14 39 39 H 1.08999 * 109.58540 * 174.42405 * 16 15 14 40 40 H 0.96992 * 120.00307 * 179.97438 * 21 20 18 41 41 H 1.09003 * 109.58826 * 293.81687 * 26 17 16 42 42 H 1.09004 * 109.58482 * 173.39704 * 26 17 16 43 43 H 1.09000 * 109.49700 * 301.33659 * 27 14 2 44 44 H 1.09001 * 109.49738 * 61.43537 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3572 6 8 1.8573 1.1613 -2.4119 7 6 2.6393 -0.7137 -3.5617 8 6 2.9787 -2.0693 -3.5217 9 7 3.4106 -2.6541 -4.6257 10 6 3.5291 -1.9799 -5.7536 11 7 3.2275 -0.7006 -5.8414 12 6 2.7858 -0.0305 -4.7838 13 8 2.4772 1.2830 -4.8800 14 6 2.0401 -0.7211 1.2492 15 6 1.5312 -2.1645 1.2482 16 6 2.0722 -2.8933 2.4824 17 7 1.7087 -2.1262 3.6817 18 6 1.0457 -2.7257 4.7190 19 1 0.4036 -2.1399 5.3600 20 6 1.1988 -4.0865 4.9465 21 7 2.2124 -4.7334 4.4113 22 14 -0.0338 -4.9997 6.0125 23 1 -1.3873 -4.8864 5.4119 24 1 0.3508 -6.4314 6.0982 25 1 -0.0454 -4.4073 7.3742 26 6 2.0707 -0.7038 3.7469 27 6 1.5298 0.0006 2.4986 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 2.2491 -1.6318 -1.1526 32 1 2.8849 -2.6313 -2.6042 33 1 3.8860 -2.4938 -6.6338 34 1 1.5565 1.4540 -5.1214 35 1 3.1301 -0.7206 1.2493 36 1 0.4415 -2.1661 1.2733 37 1 1.8756 -2.6709 0.3466 38 1 3.1572 -2.9720 2.4139 39 1 1.6342 -3.8898 2.5394 40 1 2.3196 -5.6841 4.5705 41 1 3.1556 -0.6039 3.7816 42 1 1.6318 -0.2556 4.6384 43 1 1.8731 1.0350 2.4870 44 1 0.4401 -0.0215 2.5120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997632872.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:17 Heat of formation + Delta-G solvation = -5.254961 kcal Electronic energy + Delta-G solvation = -27207.598121 eV Core-core repulsion = 23354.172796 eV Total energy + Delta-G solvation = -3853.425325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.71961 -39.83635 -38.23971 -37.78823 -35.36533 -33.96541 -33.05824 -32.12695 -30.77577 -30.05663 -28.80621 -25.92908 -25.37019 -24.59749 -23.36746 -22.46270 -21.23542 -20.43801 -19.61676 -18.81621 -18.35132 -17.92525 -16.87576 -16.69294 -15.82782 -15.59005 -14.95451 -14.79167 -14.67739 -14.40004 -14.25507 -14.08251 -13.80902 -13.58495 -13.08258 -12.80386 -12.58462 -12.53565 -12.23889 -11.74201 -11.63364 -11.54614 -11.24782 -11.10785 -10.89515 -10.73663 -10.55909 -10.23871 -10.22995 -10.06605 -10.02409 -9.87817 -9.80205 -9.62585 -9.42070 -9.11182 -8.49403 -6.70624 -5.82257 -3.23917 -0.02959 0.46413 2.58457 2.79993 2.98958 3.35479 3.35899 3.41943 3.43025 3.58796 3.85889 4.31884 4.43054 4.47198 4.78272 4.97632 5.00811 5.09670 5.26275 5.35767 5.47561 5.58317 5.66065 5.66865 5.77807 5.94853 6.05509 6.08750 6.20729 6.27581 6.33101 6.37276 6.47975 6.53424 6.66874 6.70780 6.77749 6.96252 7.01372 7.29648 7.33909 7.50753 7.60021 7.76349 7.99821 8.41845 9.18439 9.82011 10.38522 11.26264 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020922 B = 0.002883 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.994391 B = 9711.160028 C =10601.218635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.085 0.915 4 N -0.714 5.714 5 C 0.566 3.434 6 O -0.521 6.521 7 C -0.259 4.259 8 C 0.199 3.801 9 N -0.527 5.527 10 C 0.339 3.661 11 N -0.545 5.545 12 C 0.418 3.582 13 O -0.454 6.454 14 C -0.087 4.087 15 C -0.137 4.137 16 C 0.171 3.829 17 N -0.591 5.591 18 C -0.252 4.252 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.145 3.855 27 C -0.126 4.126 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.399 0.601 32 H 0.177 0.823 33 H 0.207 0.793 34 H 0.414 0.586 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.041 0.959 38 H 0.016 0.984 39 H 0.087 0.913 40 H 0.254 0.746 41 H 0.016 0.984 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.378 6.508 -18.029 19.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 H 0.103 0.897 4 N -0.366 5.366 5 C 0.350 3.650 6 O -0.398 6.398 7 C -0.268 4.268 8 C 0.033 3.967 9 N -0.242 5.242 10 C 0.052 3.948 11 N -0.270 5.270 12 C 0.229 3.771 13 O -0.262 6.262 14 C -0.106 4.106 15 C -0.176 4.176 16 C 0.045 3.955 17 N -0.314 5.314 18 C -0.382 4.382 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.731 3.269 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.019 3.981 27 C -0.165 4.165 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.235 0.765 32 H 0.194 0.806 33 H 0.223 0.777 34 H 0.275 0.725 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.034 0.966 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.034 0.966 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.314 6.895 -18.645 19.881 hybrid contribution -1.114 -0.640 1.086 1.682 sum -0.800 6.254 -17.558 18.656 Atomic orbital electron populations 1.22231 0.95140 1.02607 1.02092 1.21170 0.94346 0.96890 0.83250 0.89666 1.46145 1.66606 1.14225 1.09609 1.17576 0.78376 0.86515 0.82492 1.90818 1.49636 1.14753 1.84594 1.22134 1.10233 0.96866 0.97607 1.23574 0.86007 0.89950 0.97203 1.68455 1.15757 1.40187 0.99760 1.25111 0.88433 0.85550 0.95713 1.68152 1.15756 1.10541 1.32515 1.19476 0.86697 0.84225 0.86667 1.84645 1.34579 1.15974 1.91015 1.21342 1.00144 0.96339 0.92767 1.22312 1.01197 0.94406 0.99703 1.20763 0.96329 0.95829 0.82568 1.44032 1.66807 1.04701 1.15881 1.19148 1.19330 0.91996 1.07736 0.91748 1.25023 0.97108 0.98229 0.99278 1.70016 1.27855 1.08962 1.47941 0.86384 0.81263 0.78839 0.80368 1.21063 1.21651 1.20905 1.20894 0.96256 0.86297 0.94677 1.22073 1.01145 0.97691 0.95624 0.92981 0.91865 0.90996 0.76470 0.80591 0.77654 0.72458 0.91306 0.91902 0.94077 0.96560 0.89437 0.93599 0.96571 0.92749 0.92970 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 8.78 37.16 0.33 -1.71 16 2 C 0.15 1.89 2.40 -67.93 -0.16 1.73 16 3 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 4 N -0.71 -8.15 4.95 -54.85 -0.27 -8.42 16 5 C 0.57 7.01 7.74 -12.47 -0.10 6.92 16 6 O -0.52 -7.93 14.98 -15.86 -0.24 -8.17 16 7 C -0.26 -2.76 5.92 -104.56 -0.62 -3.38 16 8 C 0.20 1.81 10.80 -16.81 -0.18 1.63 16 9 N -0.53 -4.93 10.42 -14.29 -0.15 -5.08 16 10 C 0.34 2.82 12.27 -92.09 -1.13 1.70 16 11 N -0.54 -5.57 10.45 -14.32 -0.15 -5.72 16 12 C 0.42 4.59 7.85 -16.19 -0.13 4.46 16 13 O -0.45 -4.88 11.81 -38.65 -0.46 -5.34 16 14 C -0.09 -1.28 2.14 -90.58 -0.19 -1.47 16 15 C -0.14 -2.24 4.81 -26.61 -0.13 -2.37 16 16 C 0.17 3.77 5.31 -3.70 -0.02 3.75 16 17 N -0.59 -14.07 2.99 -172.31 -0.52 -14.59 16 18 C -0.25 -6.70 9.59 -15.06 -0.14 -6.85 16 19 H 0.06 1.69 7.89 -52.49 -0.41 1.27 16 20 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 21 N -0.90 -25.41 11.19 55.49 0.62 -24.79 16 22 Si 0.90 21.16 29.59 -169.99 -5.03 16.13 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.15 2.88 6.51 -3.71 -0.02 2.86 16 27 C -0.13 -1.99 4.96 -26.61 -0.13 -2.12 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.80 6.46 -51.93 -0.34 0.47 16 30 H 0.07 0.89 6.46 -51.93 -0.34 0.56 16 31 H 0.40 3.88 4.97 -40.82 -0.20 3.67 16 32 H 0.18 1.18 6.53 -52.49 -0.34 0.84 16 33 H 0.21 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.41 2.61 9.06 45.56 0.41 3.02 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.07 6.51 -51.93 -0.34 0.74 16 37 H 0.04 0.56 6.46 -51.93 -0.34 0.22 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 2.19 6.04 -51.93 -0.31 1.88 16 40 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 1.05 6.51 -51.93 -0.34 0.71 16 LS Contribution 351.18 15.07 5.29 5.29 Total: -1.00 -32.82 351.18 -8.64 -41.46 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.02 Total: 4.10 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -2.72 Total: 5.12 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.47 Total: -58.60 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.69 Total: -13.51 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.82 -8.64 -41.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997632872.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.205 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds