Wall clock time and date at job start Tue Mar 31 2020 12:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46998 * 2 1 4 4 N 1.46495 * 109.47426 * 239.99857 * 2 1 3 5 5 C 1.34777 * 120.00279 * 84.99925 * 4 2 1 6 6 O 1.21596 * 119.99678 * 0.02562 * 5 4 2 7 7 C 1.47570 * 120.00255 * 180.02562 * 5 4 2 8 8 C 1.38048 * 119.72879 * 180.02562 * 7 5 4 9 9 N 1.34882 * 119.95054 * 179.97438 * 8 7 5 10 10 H 0.96998 * 120.30581 * 180.02562 * 9 8 7 11 11 C 1.34954 * 119.38057 * 0.02562 * 9 8 7 12 12 O 1.21858 * 120.26581 * 179.97438 * 11 9 8 13 13 C 1.41789 * 119.46287 * 359.97438 * 11 9 8 14 14 N 1.30606 * 120.03063 * 0.02562 * 13 11 9 15 15 C 1.53007 * 109.46954 * 119.99685 * 2 1 3 16 16 C 1.53039 * 109.45845 * 60.02684 * 15 2 1 17 17 C 1.53192 * 109.31232 * 178.59984 * 16 15 2 18 18 N 1.46920 * 108.76436 * 54.65424 * 17 16 15 19 19 C 1.36942 * 120.63193 * 126.40926 * 18 17 16 20 20 H 1.08003 * 119.99357 * 331.82420 * 19 18 17 21 21 C 1.38805 * 120.00404 * 151.82723 * 19 18 17 22 22 N 1.31618 * 119.99801 * 343.07091 * 21 19 18 23 23 Si 1.86803 * 120.00194 * 163.06489 * 21 19 18 24 24 H 1.48503 * 109.46735 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46996 * 119.99774 * 23 21 19 26 26 H 1.48490 * 109.47578 * 240.00171 * 23 21 19 27 27 C 1.46929 * 118.74151 * 306.38634 * 18 17 16 28 28 C 1.53039 * 109.45875 * 299.97065 * 15 2 1 29 29 H 1.08995 * 109.47369 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46952 * 300.00405 * 1 2 3 31 31 H 1.09002 * 109.46907 * 60.00181 * 1 2 3 32 32 H 0.97004 * 119.99986 * 265.00254 * 4 2 1 33 33 H 1.08001 * 120.02567 * 359.97438 * 8 7 5 34 34 H 1.07993 * 119.98353 * 180.02562 * 13 11 9 35 35 H 1.09003 * 109.45763 * 180.02562 * 15 2 1 36 36 H 1.08991 * 109.49681 * 298.56764 * 16 15 2 37 37 H 1.09001 * 109.49704 * 58.66588 * 16 15 2 38 38 H 1.09006 * 109.59516 * 294.86761 * 17 16 15 39 39 H 1.08991 * 109.70572 * 174.50734 * 17 16 15 40 40 H 0.97003 * 119.99669 * 179.97438 * 22 21 19 41 41 H 1.09004 * 109.58768 * 293.81683 * 27 18 17 42 42 H 1.09001 * 109.70309 * 173.46952 * 27 18 17 43 43 H 1.08994 * 109.50000 * 301.33854 * 28 15 2 44 44 H 1.09000 * 109.49641 * 61.43490 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1472 -0.0183 -2.3571 6 8 1.8584 1.1616 -2.4116 7 6 2.6386 -0.7141 -3.5621 8 6 2.7688 -0.0199 -4.7482 9 7 3.2181 -0.6514 -5.8522 10 1 3.3119 -0.1685 -6.6882 11 6 3.5357 -1.9611 -5.7827 12 8 3.9427 -2.5477 -6.7703 13 6 3.3922 -2.6492 -4.5513 14 7 2.9551 -2.0161 -3.4959 15 6 2.0400 -0.7212 1.2494 16 6 1.5302 -2.1642 1.2488 17 6 2.0713 -2.8932 2.4827 18 7 1.7085 -2.1257 3.6819 19 6 1.0454 -2.7248 4.7195 20 1 0.3977 -3.5683 4.5312 21 6 1.2056 -2.2480 6.0132 22 7 2.2200 -1.4613 6.3037 23 14 -0.0186 -2.7228 7.3420 24 1 -1.0589 -3.6099 6.7623 25 1 0.6890 -3.4383 8.4341 26 1 -0.6586 -1.4982 7.8859 27 6 2.0711 -0.7034 3.7470 28 6 1.5303 0.0009 2.4987 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6318 -1.1525 33 1 2.5112 1.0280 -4.7922 34 1 3.6443 -3.6973 -4.4861 35 1 3.1300 -0.7207 1.2494 36 1 0.4406 -2.1651 1.2741 37 1 1.8741 -2.6712 0.3472 38 1 3.1563 -2.9724 2.4140 39 1 1.6351 -3.8903 2.5412 40 1 2.3317 -1.1277 7.2077 41 1 3.1560 -0.6040 3.7814 42 1 1.6345 -0.2533 4.6386 43 1 1.8741 1.0352 2.4868 44 1 0.4406 -0.0206 2.5121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997734990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:24 Heat of formation + Delta-G solvation = -11.877412 kcal Electronic energy + Delta-G solvation = -26866.867217 eV Core-core repulsion = 23013.154721 eV Total energy + Delta-G solvation = -3853.712496 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.22408 -39.98645 -38.31512 -37.65961 -35.79669 -35.28079 -32.86033 -31.43453 -30.66788 -29.73179 -28.79781 -25.96721 -25.55780 -24.96255 -23.38507 -22.43314 -21.63618 -20.39612 -19.47046 -18.91025 -18.59476 -17.52956 -16.67566 -16.52702 -16.39831 -15.92544 -15.22357 -15.05283 -14.84479 -14.54402 -14.22664 -13.93596 -13.68695 -13.52086 -13.19768 -12.96775 -12.58593 -12.47056 -12.30805 -12.13498 -12.00948 -11.65295 -11.38510 -11.23638 -10.90237 -10.70784 -10.43090 -10.40048 -10.14770 -10.07980 -9.94727 -9.84581 -9.49530 -9.38960 -9.07543 -8.74109 -8.45257 -6.64184 -5.77106 -3.19329 -0.03605 0.76024 1.96781 2.51930 3.02979 3.32499 3.37904 3.46044 3.48012 3.64966 3.72252 4.24074 4.48943 4.51222 4.76823 5.04875 5.16597 5.35900 5.40102 5.41511 5.54847 5.61666 5.68147 5.75433 5.81166 5.86777 6.04836 6.12769 6.17315 6.29141 6.39881 6.47096 6.55011 6.65879 6.74957 6.79961 6.84431 6.95198 7.02504 7.13735 7.40015 7.53741 7.68769 7.81761 8.10714 8.47420 9.23770 9.87453 10.44279 11.31337 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028283 B = 0.002501 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.763578 B =11192.425446 C =11748.171296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.085 0.915 4 N -0.699 5.699 5 C 0.586 3.414 6 O -0.549 6.549 7 C -0.075 4.075 8 C 0.174 3.826 9 N -0.587 5.587 10 H 0.425 0.575 11 C 0.477 3.523 12 O -0.522 6.522 13 C 0.044 3.956 14 N -0.371 5.371 15 C -0.085 4.085 16 C -0.130 4.130 17 C 0.146 3.854 18 N -0.592 5.592 19 C -0.250 4.250 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.171 3.829 28 C -0.134 4.134 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.410 0.590 33 H 0.191 0.809 34 H 0.196 0.804 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.052 0.948 40 H 0.253 0.747 41 H 0.016 0.984 42 H 0.087 0.913 43 H 0.050 0.950 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.786 3.626 -22.528 22.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.103 0.897 4 N -0.349 5.349 5 C 0.371 3.629 6 O -0.428 6.428 7 C -0.199 4.199 8 C 0.038 3.962 9 N -0.220 5.220 10 H 0.266 0.734 11 C 0.273 3.727 12 O -0.396 6.396 13 C -0.146 4.146 14 N -0.086 5.086 15 C -0.104 4.104 16 C -0.169 4.169 17 C 0.019 3.981 18 N -0.315 5.315 19 C -0.379 4.379 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.045 3.955 28 C -0.173 4.173 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.248 0.752 33 H 0.208 0.792 34 H 0.212 0.788 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.715 3.805 -22.059 22.396 hybrid contribution -0.281 0.022 -0.397 0.486 sum 0.434 3.827 -22.456 22.784 Atomic orbital electron populations 1.22230 0.95186 1.02494 1.02127 1.21210 0.94363 0.96979 0.83371 0.89665 1.46027 1.65022 1.14922 1.08977 1.17200 0.77667 0.85729 0.82310 1.90804 1.52102 1.15016 1.84863 1.20523 1.13654 0.90938 0.94740 1.23234 0.87611 1.00162 0.85217 1.43700 1.52481 1.12514 1.13273 0.73448 1.18820 0.80243 0.81283 0.92394 1.91015 1.45739 1.65151 1.37745 1.24786 1.01713 1.02056 0.86087 1.67711 1.02476 1.07428 1.30984 1.21327 1.00112 0.95832 0.93144 1.22120 1.01188 0.94982 0.98589 1.20878 0.96194 0.94292 0.86716 1.44052 1.66803 1.05092 1.15520 1.19222 1.18882 1.14250 0.85583 0.91726 1.25040 0.97116 1.00529 0.97057 1.70042 1.27909 1.37670 1.19152 0.86251 0.80995 0.77767 0.81936 1.20289 1.21796 1.21596 1.20761 0.96391 0.83744 0.94561 1.22260 1.01005 0.97954 0.96101 0.92015 0.90925 0.92984 0.75238 0.79205 0.78761 0.91350 0.91707 0.93496 0.96634 0.92899 0.93735 0.96556 0.89465 0.93180 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 8.78 37.16 0.33 -1.80 16 2 C 0.14 1.95 2.40 -67.93 -0.16 1.79 16 3 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 4 N -0.70 -8.49 4.99 -54.83 -0.27 -8.76 16 5 C 0.59 7.01 7.75 -12.45 -0.10 6.91 16 6 O -0.55 -7.74 15.94 5.28 0.08 -7.66 16 7 C -0.07 -0.70 6.71 -83.12 -0.56 -1.25 16 8 C 0.17 1.05 10.77 -16.28 -0.18 0.88 16 9 N -0.59 -3.12 5.28 -14.19 -0.08 -3.19 16 10 H 0.43 1.04 8.92 -40.82 -0.36 0.68 16 11 C 0.48 3.97 7.74 -14.82 -0.11 3.85 16 12 O -0.52 -5.99 17.95 5.05 0.09 -5.90 16 13 C 0.04 0.35 11.23 -16.72 -0.19 0.16 16 14 N -0.37 -3.42 9.62 -9.34 -0.09 -3.51 16 15 C -0.09 -1.31 2.14 -90.58 -0.19 -1.51 16 16 C -0.13 -2.06 4.81 -26.61 -0.13 -2.19 16 17 C 0.15 2.93 6.52 -3.71 -0.02 2.90 16 18 N -0.59 -14.41 2.99 -172.32 -0.52 -14.92 16 19 C -0.25 -6.74 9.58 -15.06 -0.14 -6.88 16 20 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16 21 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 22 N -0.90 -25.99 11.19 55.49 0.62 -25.37 16 23 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.17 3.96 5.30 -3.71 -0.02 3.94 16 28 C -0.13 -2.39 4.97 -26.61 -0.13 -2.52 16 29 H 0.06 0.81 6.46 -51.93 -0.34 0.47 16 30 H 0.07 0.97 6.46 -51.93 -0.34 0.63 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.41 4.71 6.16 -40.82 -0.25 4.46 16 33 H 0.19 0.73 7.58 -52.49 -0.40 0.33 16 34 H 0.20 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.07 6.51 -51.93 -0.34 0.73 16 37 H 0.05 0.63 6.46 -51.93 -0.34 0.29 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 40 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 2.28 6.07 -51.93 -0.31 1.96 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 1.12 6.51 -51.93 -0.34 0.78 16 LS Contribution 354.10 15.07 5.34 5.34 Total: -1.00 -33.38 354.10 -7.45 -40.83 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.90 Total: 2.46 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -1.70 Total: 4.21 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.33 Total: -55.76 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.17 Total: -13.55 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.38 -7.45 -40.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997734990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.950 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds