Wall clock time and date at job start Tue Mar 31 2020 13:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.46636 * 2 1 4 4 C 1.35478 * 116.99688 * 179.97438 * 3 2 1 5 5 C 1.39640 * 119.97554 * 180.02562 * 4 3 2 6 6 N 1.31532 * 120.03874 * 180.02562 * 5 4 3 7 7 C 1.33221 * 119.98785 * 359.97438 * 6 5 4 8 8 C 1.47907 * 120.02132 * 179.97438 * 7 6 5 9 9 O 1.21541 * 119.99730 * 185.13202 * 8 7 6 10 10 N 1.34778 * 120.00064 * 5.12963 * 8 7 6 11 11 C 1.46496 * 119.99975 * 5.59101 * 10 8 7 12 12 C 1.46499 * 119.99979 * 185.58969 * 10 8 7 13 13 C 1.53781 * 113.61224 * 60.92937 * 12 10 8 14 14 C 1.53778 * 87.08232 * 89.11728 * 13 12 10 15 15 N 1.46499 * 113.61546 * 270.80014 * 14 13 12 16 16 C 1.36941 * 120.00161 * 199.25662 * 15 14 13 17 17 H 1.07997 * 119.99699 * 4.47551 * 16 15 14 18 18 C 1.38807 * 119.99929 * 184.47717 * 16 15 14 19 19 N 1.31623 * 120.00247 * 184.73162 * 18 16 15 20 20 Si 1.86803 * 120.00167 * 4.72582 * 18 16 15 21 21 H 1.48500 * 109.47015 * 84.87275 * 20 18 16 22 22 H 1.48498 * 109.47099 * 204.87457 * 20 18 16 23 23 H 1.48506 * 109.47236 * 324.87231 * 20 18 16 24 24 C 1.53781 * 87.17097 * 25.38815 * 14 13 12 25 25 C 1.39383 * 119.95267 * 0.25970 * 7 6 5 26 26 N 1.32083 * 119.96013 * 359.49888 * 25 7 6 27 27 H 1.08998 * 109.47114 * 299.99488 * 1 2 3 28 28 H 1.09000 * 109.47763 * 60.00020 * 1 2 3 29 29 H 1.09003 * 109.46939 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46659 * 240.00233 * 2 1 3 31 31 H 1.09000 * 109.47309 * 120.00261 * 2 1 3 32 32 H 1.07999 * 119.98059 * 359.97438 * 5 4 3 33 33 H 1.09003 * 109.46995 * 181.78165 * 11 10 8 34 34 H 1.09001 * 109.47116 * 301.78161 * 11 10 8 35 35 H 1.09000 * 109.47468 * 61.77971 * 11 10 8 36 36 H 1.08995 * 112.84880 * 289.73575 * 12 10 8 37 37 H 1.08998 * 113.61779 * 334.56326 * 13 12 10 38 38 H 1.09002 * 113.61432 * 203.66708 * 13 12 10 39 39 H 1.09001 * 113.61704 * 139.97729 * 14 13 12 40 40 H 0.97007 * 119.99925 * 19.24651 * 15 14 13 41 41 H 0.96998 * 120.00283 * 179.97438 * 19 18 16 42 42 H 1.08998 * 113.61574 * 89.16197 * 24 14 13 43 43 H 1.09008 * 113.61399 * 220.06193 * 24 14 13 44 44 H 1.08001 * 120.01810 * 179.72185 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3494 1.5249 0.0005 5 6 3.8825 2.8155 0.0011 6 7 5.1863 2.9893 0.0011 7 6 5.9988 1.9336 0.0011 8 6 7.4650 2.1282 0.0006 9 8 8.2053 1.1688 -0.0936 10 7 7.9801 3.3693 0.1044 11 6 7.0949 4.5124 0.3407 12 6 9.4253 3.5752 -0.0189 13 6 9.9951 3.1433 -1.3804 14 6 9.6962 4.5701 -1.8698 15 7 8.3512 4.7294 -2.4282 16 6 8.0707 5.7913 -3.2461 17 1 8.8578 6.4708 -3.5378 18 6 6.7748 5.9943 -3.7002 19 7 6.5220 6.9585 -4.5597 20 14 5.3895 4.8989 -3.0915 21 1 4.8716 5.4256 -1.8032 22 1 4.2950 4.8813 -4.0949 23 1 5.9006 3.5189 -2.8924 24 6 9.8106 5.0156 -0.4023 25 6 5.4662 0.6455 -0.0044 26 7 4.1566 0.4732 0.0004 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.2239 3.6715 0.0007 33 1 7.6838 5.4293 0.3635 34 1 6.3585 4.5733 -0.4606 35 1 6.5837 4.3850 1.2950 36 1 9.9828 3.1835 0.8318 37 1 9.4013 2.3772 -1.8791 38 1 11.0583 2.9048 -1.3530 39 1 10.4733 4.9829 -2.5132 40 1 7.6593 4.0825 -2.2188 41 1 5.6165 7.1002 -4.8772 42 1 10.8232 5.2900 -0.1070 43 1 9.0679 5.7590 -0.1125 44 1 6.1239 -0.2111 -0.0090 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999924596.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:16 Heat of formation + Delta-G solvation = 48.482478 kcal Electronic energy + Delta-G solvation = -28132.262414 eV Core-core repulsion = 24281.167319 eV Total energy + Delta-G solvation = -3851.095095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.64212 -40.20418 -38.84576 -37.67887 -34.92451 -33.92615 -33.09285 -32.44799 -30.69956 -30.33854 -27.07592 -25.68658 -25.41091 -24.74860 -23.94779 -23.00306 -22.45095 -20.43524 -18.94140 -18.54300 -18.04677 -17.54444 -16.96814 -16.80102 -16.28634 -15.59229 -15.16771 -15.07041 -14.92463 -14.57146 -14.31518 -13.93737 -13.80933 -13.26339 -12.98301 -12.94028 -12.92787 -12.66366 -12.47641 -12.07179 -11.98000 -11.77585 -11.62571 -11.47378 -11.08545 -11.07885 -10.84843 -10.75527 -10.27525 -10.18421 -10.08743 -9.75604 -9.59847 -9.18276 -8.99582 -8.91659 -8.22919 -7.28876 -5.81278 -3.16322 0.34338 0.83213 2.49504 2.72315 3.07081 3.33466 3.37530 3.40269 3.65335 3.77254 3.93707 4.23666 4.54810 4.60589 4.64055 4.67242 4.91771 4.99413 5.04462 5.08733 5.24710 5.27396 5.34648 5.39233 5.45973 5.56901 5.64404 5.69160 5.76374 5.80233 5.96224 6.09174 6.15915 6.34767 6.49774 6.53857 6.68929 6.72010 6.77348 6.86963 6.97751 7.40145 7.56979 7.98708 8.24261 8.39175 9.18182 9.90714 10.11458 11.36597 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013366 B = 0.005003 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.385391 B = 5595.092103 C = 7148.190042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.294 6.294 4 C 0.295 3.705 5 C 0.040 3.960 6 N -0.364 5.364 7 C -0.014 4.014 8 C 0.577 3.423 9 O -0.535 6.535 10 N -0.569 5.569 11 C 0.078 3.922 12 C 0.123 3.877 13 C -0.160 4.160 14 C 0.171 3.829 15 N -0.728 5.728 16 C -0.243 4.243 17 H 0.093 0.907 18 C 0.009 3.991 19 N -0.930 5.930 20 Si 0.875 3.125 21 H -0.268 1.268 22 H -0.296 1.296 23 H -0.286 1.286 24 C -0.183 4.183 25 C 0.156 3.844 26 N -0.502 5.502 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.183 0.817 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.364 0.636 41 H 0.259 0.741 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.192 -11.800 13.506 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.015 4.015 3 O -0.199 6.199 4 C 0.111 3.889 5 C -0.126 4.126 6 N -0.081 5.081 7 C -0.153 4.153 8 C 0.363 3.637 9 O -0.413 6.413 10 N -0.299 5.299 11 C -0.064 4.064 12 C 0.021 3.979 13 C -0.200 4.200 14 C 0.059 3.941 15 N -0.370 5.370 16 C -0.373 4.373 17 H 0.110 0.890 18 C -0.187 4.187 19 N -0.578 5.578 20 Si 0.706 3.294 21 H -0.194 1.194 22 H -0.223 1.223 23 H -0.213 1.213 24 C -0.224 4.224 25 C -0.003 4.003 26 N -0.231 5.231 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.200 0.800 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.198 0.802 41 H 0.070 0.930 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -6.016 -11.892 13.291 18.821 hybrid contribution -1.236 -0.948 0.287 1.585 sum -7.252 -12.840 13.578 20.046 Atomic orbital electron populations 1.21829 0.92530 1.03109 1.03591 1.22768 0.95202 0.80564 1.02921 1.86252 1.15780 1.31350 1.86474 1.21267 0.85145 0.91721 0.90729 1.23182 0.92077 0.95265 1.02117 1.69033 1.02873 1.31670 1.04543 1.22038 0.95792 0.91102 1.06393 1.17414 0.85295 0.83362 0.77625 1.90762 1.59417 1.39961 1.51147 1.47384 1.07387 1.06773 1.68398 1.22328 0.93911 0.88390 1.01743 1.21966 0.79488 0.98682 0.97809 1.23703 1.00962 0.99397 0.95918 1.21107 0.88766 0.92682 0.91534 1.42605 1.07416 1.29694 1.57241 1.19107 0.94941 1.02871 1.20397 0.88964 1.24641 0.96907 0.97897 0.99261 1.69693 1.20110 1.33458 1.34529 0.86779 0.83410 0.80541 0.78673 1.19395 1.22322 1.21289 1.24304 1.01470 0.94656 1.01965 1.23474 0.89842 0.97618 0.89363 1.68235 1.05239 1.32426 1.17250 0.91474 0.91385 0.90078 0.91176 0.91223 0.80015 0.89724 0.89410 0.92864 0.90512 0.90983 0.89139 0.91233 0.80200 0.93042 0.89529 0.89728 0.79673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.06 0.56 6.04 37.16 0.22 0.78 16 3 O -0.29 -3.52 10.12 -18.13 -0.18 -3.70 16 4 C 0.29 4.03 7.50 -16.71 -0.13 3.91 16 5 C 0.04 0.58 11.18 -17.16 -0.19 0.39 16 6 N -0.36 -6.01 6.18 -9.48 -0.06 -6.07 16 7 C -0.01 -0.24 6.64 -82.88 -0.55 -0.79 16 8 C 0.58 10.34 7.24 -12.30 -0.09 10.25 16 9 O -0.54 -10.15 15.38 5.33 0.08 -10.07 16 10 N -0.57 -9.88 2.03 -174.00 -0.35 -10.24 16 11 C 0.08 1.33 7.65 59.84 0.46 1.79 16 12 C 0.12 1.99 4.14 -67.03 -0.28 1.71 16 13 C -0.16 -2.73 7.12 -25.92 -0.18 -2.92 16 14 C 0.17 3.28 4.54 -67.12 -0.30 2.98 16 15 N -0.73 -17.24 4.32 -52.64 -0.23 -17.47 16 16 C -0.24 -6.77 10.46 -15.06 -0.16 -6.93 16 17 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 18 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 19 N -0.93 -29.01 13.97 55.49 0.78 -28.24 16 20 Si 0.87 22.30 25.74 -169.99 -4.38 17.93 16 21 H -0.27 -6.36 6.76 56.52 0.38 -5.98 16 22 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 23 H -0.29 -7.29 6.52 56.52 0.37 -6.92 16 24 C -0.18 -2.91 7.22 -25.83 -0.19 -3.09 16 25 C 0.16 2.25 10.76 -17.02 -0.18 2.07 16 26 N -0.50 -6.96 9.37 -12.76 -0.12 -7.07 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 31 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 32 H 0.18 2.19 8.06 -52.49 -0.42 1.77 16 33 H 0.08 1.41 5.07 -51.93 -0.26 1.14 16 34 H 0.09 1.73 3.44 -51.93 -0.18 1.55 16 35 H 0.05 0.79 7.69 -51.93 -0.40 0.39 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.41 7.16 -51.93 -0.37 1.04 16 38 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 40 H 0.36 8.79 4.02 -40.82 -0.16 8.63 16 41 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 42 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.08 1.43 5.38 -51.92 -0.28 1.15 16 44 H 0.19 2.32 7.64 -52.49 -0.40 1.92 16 LS Contribution 351.81 15.07 5.30 5.30 Total: -1.00 -32.99 351.81 -6.33 -39.32 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -5.89 Total: 10.66 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -1.28 Total: 9.65 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: 0.02 Total: -69.09 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.10 Total: -13.77 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.38 Total: 17.93 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.99 -6.33 -39.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999924596.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.802 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds