Wall clock time and date at job start Tue Mar 31 2020 13:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42905 * 109.47329 * 2 1 4 4 C 1.35482 * 116.99984 * 179.97438 * 3 2 1 5 5 C 1.39637 * 119.97454 * 180.02562 * 4 3 2 6 6 N 1.31532 * 120.03460 * 180.02562 * 5 4 3 7 7 C 1.33213 * 119.99453 * 359.97438 * 6 5 4 8 8 C 1.47901 * 120.02278 * 180.02562 * 7 6 5 9 9 O 1.21545 * 119.99451 * 158.84321 * 8 7 6 10 10 N 1.34772 * 120.00259 * 338.83518 * 8 7 6 11 11 C 1.46932 * 120.63024 * 0.06380 * 10 8 7 12 12 C 1.52757 * 109.00632 * 233.58044 * 11 10 8 13 13 C 1.53035 * 109.38435 * 305.58381 * 12 11 10 14 14 C 1.53045 * 109.53591 * 61.24354 * 13 12 11 15 15 H 1.08997 * 109.49968 * 58.58441 * 14 13 12 16 16 N 1.46497 * 109.52274 * 178.66826 * 14 13 12 17 17 C 1.36939 * 119.99835 * 204.85410 * 16 14 13 18 18 H 1.07995 * 120.00427 * 359.97438 * 17 16 14 19 19 C 1.38813 * 119.99844 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00352 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99789 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46728 * 90.00157 * 21 19 17 23 23 H 1.48501 * 109.47223 * 209.99688 * 21 19 17 24 24 H 1.48495 * 109.47234 * 330.00117 * 21 19 17 25 25 C 1.46925 * 120.63463 * 180.33827 * 10 8 7 26 26 C 1.39390 * 119.94764 * 359.97438 * 7 6 5 27 27 N 1.32078 * 119.96479 * 0.02562 * 26 7 6 28 28 H 1.09001 * 109.46777 * 60.00401 * 1 2 3 29 29 H 1.09000 * 109.47238 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47432 * 300.00620 * 1 2 3 31 31 H 1.09001 * 109.47856 * 239.99708 * 2 1 3 32 32 H 1.09009 * 109.46971 * 119.99863 * 2 1 3 33 33 H 1.07993 * 119.97918 * 0.02562 * 5 4 3 34 34 H 1.08998 * 109.58659 * 353.41759 * 11 10 8 35 35 H 1.09006 * 109.58679 * 113.83558 * 11 10 8 36 36 H 1.09004 * 109.56372 * 185.55360 * 12 11 10 37 37 H 1.08997 * 109.38769 * 65.51911 * 12 11 10 38 38 H 1.09002 * 109.46530 * 301.22564 * 13 12 11 39 39 H 1.09000 * 109.46452 * 181.26584 * 13 12 11 40 40 H 0.96997 * 120.00513 * 24.85307 * 16 14 13 41 41 H 0.97001 * 119.99993 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.58854 * 246.16607 * 25 10 8 43 43 H 1.09004 * 109.57963 * 6.58408 * 25 10 8 44 44 H 1.08003 * 120.01316 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3495 1.5248 0.0005 5 6 3.8827 2.8153 0.0011 6 7 5.1865 2.9890 0.0011 7 6 5.9990 1.9333 0.0011 8 6 7.4651 2.1278 0.0017 9 8 8.1965 1.2345 0.3816 10 7 7.9902 3.2956 -0.4192 11 6 7.1189 4.3852 -0.8802 12 6 7.5676 4.8258 -2.2723 13 6 9.0554 5.1824 -2.2373 14 6 9.8677 3.9497 -1.8337 15 1 9.6836 3.1440 -2.5444 16 7 11.2943 4.2828 -1.8311 17 6 12.2280 3.2968 -2.0082 18 1 11.9127 2.2736 -2.1494 19 6 13.5798 3.6124 -2.0052 20 7 13.9642 4.8592 -1.8317 21 14 14.8534 2.2672 -2.2461 22 1 15.1460 2.1163 -3.6942 23 1 16.0995 2.6305 -1.5246 24 1 14.3273 0.9858 -1.7112 25 6 9.4449 3.5011 -0.4314 26 6 5.4662 0.6452 0.0016 27 7 4.1567 0.4730 0.0016 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.2242 3.6713 0.0015 34 1 6.0877 4.0348 -0.9239 35 1 7.1919 5.2274 -0.1920 36 1 6.9917 5.6978 -2.5824 37 1 7.4049 4.0123 -2.9792 38 1 9.2209 5.9795 -1.5124 39 1 9.3717 5.5184 -3.2247 40 1 11.5776 5.2017 -1.7040 41 1 14.9088 5.0797 -1.8300 42 1 9.7115 4.2697 0.2941 43 1 9.9479 2.5675 -0.1791 44 1 6.1239 -0.2114 0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001077538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:37 Heat of formation + Delta-G solvation = 5.248351 kcal Electronic energy + Delta-G solvation = -26707.323962 eV Core-core repulsion = 22854.354095 eV Total energy + Delta-G solvation = -3852.969867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.83992 -39.91012 -38.74565 -37.27967 -34.97539 -34.15203 -32.68317 -32.21922 -31.18450 -30.71338 -28.22482 -26.11458 -25.44092 -24.24455 -23.82973 -23.11007 -21.80621 -20.81482 -19.32877 -19.12190 -18.30690 -17.13356 -17.04242 -16.94484 -16.13618 -15.50209 -15.23939 -15.07552 -14.64045 -14.51318 -14.31414 -14.09797 -13.72662 -13.42811 -13.27338 -13.11933 -13.08417 -12.82738 -12.52387 -12.30845 -12.14481 -11.84884 -11.70646 -11.24813 -11.19846 -10.88919 -10.81346 -10.55880 -10.43329 -10.21500 -10.17566 -9.80245 -9.70177 -9.21868 -9.11440 -9.03732 -8.31289 -6.98433 -5.77140 -3.06870 0.20165 0.59811 2.33179 2.65194 3.06153 3.42363 3.46073 3.51466 3.53866 3.60858 3.79348 4.05937 4.50314 4.50578 4.54121 4.60420 4.80868 4.88264 5.03513 5.16199 5.19039 5.26348 5.32422 5.40225 5.47933 5.52049 5.60205 5.69468 5.84869 5.94525 6.08901 6.17016 6.21762 6.28213 6.40576 6.52384 6.54540 6.68589 6.77625 6.84882 7.02882 7.20618 7.63334 7.73131 8.25234 8.41105 9.52803 10.06978 10.42409 11.45053 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026480 B = 0.002567 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.152103 B =10907.085496 C =11613.933434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.295 6.295 4 C 0.293 3.707 5 C 0.038 3.962 6 N -0.367 5.367 7 C -0.008 4.008 8 C 0.571 3.429 9 O -0.534 6.534 10 N -0.581 5.581 11 C 0.079 3.921 12 C -0.131 4.131 13 C -0.127 4.127 14 C 0.169 3.831 15 H 0.050 0.950 16 N -0.718 5.718 17 C -0.242 4.242 18 H 0.072 0.928 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.090 3.910 26 C 0.157 3.843 27 N -0.501 5.501 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.184 0.816 34 H 0.128 0.872 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.458 -4.300 2.941 28.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.200 6.200 4 C 0.110 3.890 5 C -0.128 4.128 6 N -0.085 5.085 7 C -0.146 4.146 8 C 0.355 3.645 9 O -0.411 6.411 10 N -0.312 5.312 11 C -0.043 4.043 12 C -0.170 4.170 13 C -0.165 4.165 14 C 0.058 3.942 15 H 0.068 0.932 16 N -0.358 5.358 17 C -0.373 4.373 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.206 1.206 25 C -0.034 4.034 26 C -0.002 4.002 27 N -0.230 5.230 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.201 0.799 34 H 0.145 0.855 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.220 0.780 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.110 0.890 44 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -28.127 -4.765 3.116 28.697 hybrid contribution 0.909 -0.520 -0.065 1.049 sum -27.218 -5.285 3.051 27.894 Atomic orbital electron populations 1.21830 0.92502 1.03212 1.03521 1.22775 0.95191 0.80441 1.03021 1.86240 1.15793 1.31468 1.86500 1.21256 0.85196 0.91697 0.90896 1.23157 0.91957 0.95260 1.02428 1.68511 1.02803 1.31319 1.05846 1.22149 0.95810 0.91026 1.05644 1.17504 0.85014 0.82982 0.78951 1.90824 1.59825 1.41812 1.48640 1.48146 1.08587 1.13261 1.61207 1.22646 0.96883 0.89874 0.94936 1.21848 0.97084 1.01094 0.96986 1.21842 0.93757 0.98878 1.02047 1.20482 0.85557 0.95078 0.93109 0.93158 1.42381 0.98693 1.08533 1.86212 1.19275 0.86765 0.89635 1.41644 0.91020 1.24754 0.97056 0.96364 1.02570 1.69662 1.15191 1.16452 1.56685 0.86187 0.81287 0.81160 0.77586 1.21707 1.21750 1.20585 1.22898 0.76433 1.03044 1.01039 1.23517 0.89775 0.97717 0.89200 1.68258 1.05299 1.32519 1.16918 0.91448 0.90024 0.91463 0.91139 0.91164 0.79893 0.85520 0.91520 0.91071 0.92104 0.92023 0.91553 0.78040 0.93480 0.91675 0.88993 0.79659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 10.28 37.16 0.38 -0.27 16 2 C 0.06 0.40 6.04 37.16 0.22 0.62 16 3 O -0.30 -2.48 10.12 -18.14 -0.18 -2.66 16 4 C 0.29 2.83 7.50 -16.71 -0.13 2.71 16 5 C 0.04 0.33 11.18 -17.16 -0.19 0.14 16 6 N -0.37 -4.11 6.50 -9.49 -0.06 -4.17 16 7 C -0.01 -0.10 6.45 -82.88 -0.53 -0.64 16 8 C 0.57 9.40 7.62 -12.31 -0.09 9.31 16 9 O -0.53 -10.44 15.94 5.33 0.08 -10.36 16 10 N -0.58 -9.43 2.98 -174.12 -0.52 -9.95 16 11 C 0.08 1.03 5.97 -3.93 -0.02 1.01 16 12 C -0.13 -1.70 6.06 -26.84 -0.16 -1.86 16 13 C -0.13 -2.06 5.36 -26.69 -0.14 -2.20 16 14 C 0.17 3.41 2.92 -67.81 -0.20 3.21 16 15 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 16 N -0.72 -17.96 5.13 -53.31 -0.27 -18.24 16 17 C -0.24 -6.78 9.93 -15.06 -0.15 -6.93 16 18 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 21 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 C 0.09 1.74 6.02 -3.71 -0.02 1.72 16 26 C 0.16 1.83 10.76 -17.02 -0.18 1.64 16 27 N -0.50 -5.41 9.37 -12.76 -0.12 -5.53 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 32 H 0.07 0.47 8.11 -51.92 -0.42 0.05 16 33 H 0.18 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.13 1.50 3.96 -79.73 -0.32 1.18 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.39 10.14 7.80 -40.82 -0.32 9.82 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.09 2.04 7.00 -51.93 -0.36 1.67 16 44 H 0.19 1.99 7.78 -52.48 -0.41 1.58 16 LS Contribution 363.88 15.07 5.48 5.48 Total: -1.00 -32.62 363.88 -7.65 -40.27 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.44 Total: 6.80 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -1.32 Total: 8.03 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: -0.25 Total: -65.28 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.10 Total: -13.02 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.62 -7.65 -40.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001077538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.514 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds