Wall clock time and date at job start Tue Mar 31 2020 13:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42903 * 109.46751 * 2 1 4 4 C 1.35484 * 116.99876 * 179.97438 * 3 2 1 5 5 C 1.39635 * 119.97762 * 179.97438 * 4 3 2 6 6 N 1.31528 * 120.03527 * 179.71677 * 5 4 3 7 7 C 1.33212 * 119.99337 * 0.55411 * 6 5 4 8 8 C 1.47905 * 120.02608 * 179.74144 * 7 6 5 9 9 O 1.21552 * 120.00103 * 179.72751 * 8 7 6 10 10 N 1.34779 * 119.99897 * 359.72492 * 8 7 6 11 11 C 1.46500 * 119.99785 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.52672 * 34.92225 * 11 10 8 13 13 C 1.53042 * 109.49765 * 155.00212 * 11 10 8 14 14 C 1.53040 * 109.54174 * 181.31850 * 13 11 10 15 15 C 1.53188 * 109.30921 * 298.63667 * 14 13 11 16 16 N 1.46926 * 108.77817 * 54.63345 * 15 14 13 17 17 C 1.36932 * 120.62923 * 126.37040 * 16 15 14 18 18 H 1.08003 * 120.00058 * 207.50814 * 17 16 15 19 19 C 1.38813 * 120.00216 * 27.51552 * 17 16 15 20 20 N 1.31614 * 120.00042 * 17.83429 * 19 17 16 21 21 Si 1.86803 * 119.99907 * 197.83738 * 19 17 16 22 22 H 1.48501 * 109.47098 * 265.35618 * 21 19 17 23 23 H 1.48493 * 109.47161 * 145.35673 * 21 19 17 24 24 H 1.48505 * 109.47060 * 25.35372 * 21 19 17 25 25 C 1.46930 * 118.73807 * 306.63893 * 16 15 14 26 26 C 1.39389 * 119.94647 * 359.46905 * 7 6 5 27 27 N 1.32072 * 119.96760 * 0.24860 * 26 7 6 28 28 H 1.09005 * 109.46642 * 60.00185 * 1 2 3 29 29 H 1.08993 * 109.46920 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47296 * 300.00284 * 1 2 3 31 31 H 1.08991 * 109.47216 * 240.00214 * 2 1 3 32 32 H 1.08999 * 109.46605 * 119.99397 * 2 1 3 33 33 H 1.07997 * 119.98021 * 359.97438 * 5 4 3 34 34 H 0.97000 * 120.00234 * 0.02562 * 10 8 7 35 35 H 1.09004 * 109.45919 * 61.29442 * 13 11 10 36 36 H 1.09008 * 109.44587 * 301.33208 * 13 11 10 37 37 H 1.09002 * 109.49979 * 178.68243 * 14 13 11 38 38 H 1.08998 * 109.49588 * 58.58319 * 14 13 11 39 39 H 1.09003 * 109.58681 * 294.84505 * 15 14 13 40 40 H 1.09001 * 109.70413 * 174.49134 * 15 14 13 41 41 H 0.97004 * 120.00090 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.58323 * 173.14513 * 25 16 15 43 43 H 1.08997 * 109.58717 * 293.57457 * 25 16 15 44 44 H 1.08006 * 120.01333 * 180.27030 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3495 1.5249 0.0005 5 6 3.8826 2.8155 0.0000 6 7 5.1864 2.9892 0.0062 7 6 5.9989 1.9335 0.0017 8 6 7.4651 2.1281 0.0029 9 8 8.2060 1.1645 0.0038 10 7 7.9796 3.3738 0.0028 11 6 9.4318 3.5665 0.0045 12 1 9.9045 2.7790 -0.5826 13 6 9.7670 4.9294 -0.6055 14 6 11.2855 5.1179 -0.6344 15 6 11.8276 5.0827 0.7979 16 7 11.3862 3.8372 1.4403 17 6 12.2933 2.9937 2.0239 18 1 12.0823 1.9367 2.0913 19 6 13.4842 3.4972 2.5291 20 7 13.6035 4.7852 2.7724 21 14 14.9175 2.3468 2.8634 22 1 14.8936 1.9272 4.2877 23 1 16.1937 3.0494 2.5757 24 1 14.8045 1.1491 1.9926 25 6 9.9535 3.5110 1.4392 26 6 5.4662 0.6455 0.0018 27 7 4.1567 0.4731 0.0012 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.2241 3.6714 -0.0012 34 1 7.3883 4.1428 0.0024 35 1 9.3146 5.7177 -0.0038 36 1 9.3756 4.9784 -1.6217 37 1 11.5243 6.0788 -1.0903 38 1 11.7406 4.3158 -1.2154 39 1 11.4435 5.9372 1.3551 40 1 12.9169 5.1183 0.7796 41 1 14.4359 5.1371 3.1250 42 1 9.8068 2.5087 1.8415 43 1 9.4135 4.2348 2.0496 44 1 6.1239 -0.2112 0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009753559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:36 Heat of formation + Delta-G solvation = -28.913783 kcal Electronic energy + Delta-G solvation = -26378.420492 eV Core-core repulsion = 22523.969244 eV Total energy + Delta-G solvation = -3854.451249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.59710 -40.92429 -39.64774 -38.85169 -36.07885 -35.39450 -34.10177 -33.25284 -32.34287 -31.67091 -30.13661 -27.25908 -26.51422 -25.90869 -23.93746 -23.82850 -23.55518 -21.80984 -21.12339 -19.77097 -19.36423 -18.76624 -18.66107 -17.63493 -17.11036 -16.76040 -16.42297 -16.16124 -15.97603 -15.71758 -15.47721 -15.25069 -15.08106 -14.76462 -14.48742 -14.18660 -14.03895 -13.65948 -13.50394 -13.41890 -13.06168 -13.02252 -12.74385 -12.57644 -12.44831 -12.44284 -12.14077 -11.96521 -11.82106 -11.80485 -11.61526 -11.34273 -11.31062 -10.61988 -10.46939 -10.22358 -9.89261 -8.70020 -7.90290 -5.34774 -0.71850 -0.17498 1.44574 1.45930 1.56736 1.58206 1.62451 1.96718 2.50356 2.58555 2.79719 2.89511 3.23986 3.25844 3.65930 3.79121 3.87345 3.94595 4.04440 4.11141 4.15806 4.26460 4.40074 4.44697 4.47692 4.56510 4.64266 4.80759 4.91966 4.93978 4.96489 5.02360 5.12179 5.14072 5.22258 5.27193 5.43287 5.54694 5.63761 5.77148 5.83559 5.85822 6.30504 6.37029 6.56288 7.09623 7.13832 7.82483 8.32646 9.15797 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026007 B = 0.002402 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.383521 B =11655.102831 C =12311.700394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.292 6.292 4 C 0.298 3.702 5 C 0.058 3.942 6 N -0.382 5.382 7 C -0.029 4.029 8 C 0.575 3.425 9 O -0.567 6.567 10 N -0.689 5.689 11 C 0.140 3.860 12 H 0.065 0.935 13 C -0.105 4.105 14 C -0.129 4.129 15 C 0.170 3.830 16 N -0.606 5.606 17 C -0.266 4.266 18 H 0.055 0.945 19 C -0.046 4.046 20 N -0.929 5.929 21 Si 0.966 3.034 22 H -0.285 1.285 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.144 3.856 26 C 0.157 3.843 27 N -0.510 5.510 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.220 0.780 34 H 0.418 0.582 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.004 0.996 40 H 0.056 0.944 41 H 0.252 0.748 42 H 0.033 0.967 43 H 0.019 0.981 44 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.737 -3.422 -9.366 28.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.196 6.196 4 C 0.113 3.887 5 C -0.111 4.111 6 N -0.099 5.099 7 C -0.166 4.166 8 C 0.360 3.640 9 O -0.445 6.445 10 N -0.340 5.340 11 C 0.034 3.966 12 H 0.084 0.916 13 C -0.143 4.143 14 C -0.168 4.168 15 C 0.045 3.955 16 N -0.330 5.330 17 C -0.396 4.396 18 H 0.073 0.927 19 C -0.242 4.242 20 N -0.575 5.575 21 Si 0.793 3.207 22 H -0.212 1.212 23 H -0.211 1.211 24 H -0.199 1.199 25 C 0.017 3.983 26 C -0.001 4.001 27 N -0.240 5.240 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.236 0.764 34 H 0.256 0.744 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.069 0.931 39 H 0.023 0.977 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.037 0.963 44 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -26.255 -3.862 -9.290 28.117 hybrid contribution 0.896 -0.545 0.647 1.232 sum -25.360 -4.408 -8.643 27.152 Atomic orbital electron populations 1.21846 0.90483 1.04430 1.03741 1.23008 0.96750 0.79452 1.02866 1.86266 1.14802 1.32732 1.85806 1.21557 0.85737 0.91917 0.89487 1.23541 0.91044 0.96041 1.00475 1.68339 1.04048 1.32124 1.05386 1.21625 0.94229 0.91925 1.08866 1.17815 0.86232 0.83637 0.76278 1.90823 1.60571 1.41247 1.51884 1.45763 1.07804 1.07920 1.72489 1.21289 0.78832 0.99009 0.97447 0.91642 1.21620 0.96585 0.94605 1.01485 1.22010 0.95178 1.01763 0.97851 1.20743 0.98914 0.86036 0.89825 1.44221 1.01074 1.23324 1.64393 1.19404 0.98702 0.89545 1.31983 0.92711 1.25727 1.02052 0.97497 0.98907 1.70176 1.26089 1.13272 1.47944 0.85296 0.79098 0.78496 0.77778 1.21203 1.21109 1.19942 1.21127 0.85150 0.97472 0.94541 1.23553 0.90156 0.97669 0.88753 1.68296 1.04947 1.33130 1.17597 0.91137 0.88330 0.91286 0.91225 0.91430 0.76381 0.74381 0.90706 0.89446 0.89616 0.93131 0.97744 0.92550 0.93875 0.94840 0.96326 0.79436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 71.98 0.74 -0.22 16 2 C 0.05 0.63 6.04 71.98 0.43 1.06 16 3 O -0.29 -4.38 10.12 -87.84 -0.89 -5.27 16 4 C 0.30 5.34 7.50 84.92 0.64 5.98 16 5 C 0.06 0.92 11.18 85.08 0.95 1.87 16 6 N -0.38 -8.07 9.70 -183.93 -1.78 -9.85 16 7 C -0.03 -0.74 6.74 41.77 0.28 -0.46 16 8 C 0.58 18.30 7.77 86.80 0.67 18.97 16 9 O -0.57 -22.27 16.00 -3.88 -0.06 -22.33 16 10 N -0.69 -20.49 5.07 -445.65 -2.26 -22.75 16 11 C 0.14 5.05 2.59 44.93 0.12 5.17 16 12 H 0.07 2.70 7.58 -2.38 -0.02 2.68 16 13 C -0.11 -3.19 5.36 30.62 0.16 -3.02 16 14 C -0.13 -4.63 6.08 30.67 0.19 -4.44 16 15 C 0.17 8.19 5.32 86.36 0.46 8.65 16 16 N -0.61 -31.93 3.00 -699.92 -2.10 -34.03 16 17 C -0.27 -15.54 9.58 84.03 0.81 -14.73 16 18 H 0.06 3.25 7.89 -2.91 -0.02 3.22 16 19 C -0.05 -2.66 4.90 84.86 0.42 -2.25 16 20 N -0.93 -55.61 11.20 21.65 0.24 -55.37 16 21 Si 0.97 46.48 29.59 68.60 2.03 48.51 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 25 C 0.14 6.51 6.06 86.22 0.52 7.04 16 26 C 0.16 3.66 10.76 84.93 0.91 4.57 16 27 N -0.51 -10.71 9.37 -307.08 -2.88 -13.59 16 28 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.07 0.83 8.11 -2.39 -0.02 0.81 16 32 H 0.07 0.84 8.11 -2.39 -0.02 0.82 16 33 H 0.22 1.81 8.06 -2.91 -0.02 1.78 16 34 H 0.42 10.16 7.95 -92.71 -0.74 9.43 16 35 H 0.07 2.11 8.14 -2.38 -0.02 2.10 16 36 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.06 3.08 6.03 -2.39 -0.01 3.06 16 41 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 42 H 0.03 1.64 7.93 -2.39 -0.02 1.62 16 43 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.19 4.20 7.64 -2.91 -0.02 4.18 16 Total: -1.00 -71.98 366.41 -0.12 -72.09 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.28 Total: 14.41 kcal Atomic # 6 Polarization: 20.88 SS G_CDS: 7.30 Total: 28.19 kcal Atomic # 7 Polarization: -126.82 SS G_CDS: -8.78 Total: -135.60 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.95 Total: -27.60 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -71.98 -0.12 -72.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009753559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.178 kcal (2) G-P(sol) polarization free energy of solvation -71.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds