Wall clock time and date at job start Tue Mar 31 2020 13:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47402 * 2 1 4 4 O 1.42902 * 109.47012 * 120.00278 * 2 1 3 5 5 C 1.35486 * 116.99999 * 150.00102 * 4 2 1 6 6 C 1.39633 * 119.97259 * 179.97438 * 5 4 2 7 7 N 1.31535 * 120.03726 * 179.72128 * 6 5 4 8 8 C 1.33214 * 119.98633 * 0.25941 * 7 6 5 9 9 C 1.47905 * 120.02178 * 179.97438 * 8 7 6 10 10 O 1.21553 * 119.99977 * 179.97438 * 9 8 7 11 11 N 1.34771 * 119.99998 * 359.97438 * 9 8 7 12 12 C 1.46505 * 120.00159 * 180.02562 * 11 9 8 13 13 H 1.09002 * 112.84351 * 336.19921 * 12 11 9 14 14 C 1.53780 * 113.61458 * 107.49873 * 12 11 9 15 15 C 1.53783 * 87.08155 * 89.11951 * 14 12 11 16 16 H 1.09000 * 113.61079 * 270.88616 * 15 14 12 17 17 N 1.46493 * 113.69056 * 139.99024 * 15 14 12 18 18 C 1.36937 * 119.99914 * 107.46642 * 17 15 14 19 19 H 1.08002 * 120.00038 * 0.02562 * 18 17 15 20 20 C 1.38818 * 120.00147 * 179.97438 * 18 17 15 21 21 N 1.31618 * 119.99948 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99923 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 90.00687 * 22 20 18 24 24 H 1.48503 * 109.47009 * 210.00225 * 22 20 18 25 25 H 1.48496 * 109.47720 * 330.00457 * 22 20 18 26 26 C 1.53775 * 113.61790 * 204.99998 * 12 11 9 27 27 C 1.39389 * 119.95322 * 359.97438 * 8 7 6 28 28 N 1.32077 * 119.96288 * 0.02562 * 27 8 7 29 29 H 1.09003 * 109.47653 * 299.99947 * 1 2 3 30 30 H 1.09006 * 109.47097 * 60.00003 * 1 2 3 31 31 H 1.09004 * 109.47508 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47303 * 239.99728 * 2 1 3 33 33 H 1.08996 * 109.47085 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46995 * 300.00533 * 3 2 1 35 35 H 1.09001 * 109.46547 * 59.99988 * 3 2 1 36 36 H 1.08002 * 119.98596 * 0.02562 * 6 5 4 37 37 H 0.97001 * 120.00575 * 359.97438 * 11 9 8 38 38 H 1.08999 * 113.61473 * 203.66987 * 14 12 11 39 39 H 1.09003 * 113.61302 * 334.57102 * 14 12 11 40 40 H 0.97002 * 120.00283 * 287.46649 * 17 15 14 41 41 H 0.96993 * 120.00039 * 179.97438 * 21 20 18 42 42 H 1.08998 * 113.61161 * 25.42773 * 26 12 11 43 43 H 1.08997 * 113.62035 * 156.33185 * 26 12 11 44 44 H 1.08003 * 120.01638 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1970 -1.3121 1.0654 6 6 3.7211 -1.9900 2.1679 7 7 4.8744 -2.6149 2.0693 8 6 5.5452 -2.5967 0.9185 9 6 6.8423 -3.2986 0.8070 10 8 7.4539 -3.2821 -0.2434 11 7 7.3462 -3.9564 1.8699 12 6 8.6313 -4.6511 1.7596 13 1 8.8789 -4.9225 0.7333 14 6 9.7774 -3.9488 2.5066 15 6 9.3756 -4.7759 3.7393 16 1 8.6230 -4.2931 4.3626 17 7 10.5167 -5.2763 4.5098 18 6 10.8156 -4.7249 5.7270 19 1 10.2098 -3.9213 6.1192 20 6 11.8965 -5.1994 6.4574 21 7 12.6344 -6.1789 5.9797 22 14 12.3046 -4.4466 8.1176 23 1 11.5789 -5.1803 9.1855 24 1 13.7670 -4.5413 8.3579 25 1 11.8924 -3.0201 8.1292 26 6 8.7938 -5.8083 2.7591 27 6 5.0238 -1.9158 -0.1803 28 7 3.8657 -1.2890 -0.0792 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1770 -2.0054 3.1007 37 1 6.8584 -3.9692 2.7082 38 1 10.7662 -4.1945 2.1193 39 1 9.6249 -2.8768 2.6315 40 1 11.0605 -5.9983 4.1577 41 1 13.3899 -6.5102 6.4899 42 1 7.8473 -6.2374 3.0879 43 1 9.5137 -6.5624 2.4410 44 1 5.5671 -1.9001 -1.1137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020152460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:33 Heat of formation + Delta-G solvation = 7.805619 kcal Electronic energy + Delta-G solvation = -25751.929511 eV Core-core repulsion = 21899.070535 eV Total energy + Delta-G solvation = -3852.858976 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.83087 -40.02942 -39.10637 -37.83770 -34.80810 -33.96804 -33.85606 -32.55908 -31.03099 -29.78772 -27.80175 -25.80950 -25.27330 -25.11239 -24.28622 -22.42262 -22.00453 -21.14515 -19.09716 -18.96509 -18.52821 -17.79360 -17.04392 -16.50558 -16.05266 -15.39253 -15.38870 -15.21793 -14.89037 -14.82864 -14.38479 -13.95949 -13.86543 -13.64863 -13.36354 -13.00678 -12.85637 -12.66509 -12.55872 -12.22051 -12.12729 -11.84650 -11.78871 -11.63389 -11.34646 -11.23872 -10.89648 -10.79175 -10.43651 -10.32715 -10.17622 -9.89279 -9.62940 -9.53673 -9.20849 -8.90150 -8.77715 -6.97269 -5.78936 -3.07770 0.12037 0.59539 2.28918 2.53677 3.00449 3.42773 3.45595 3.48209 3.49830 3.53528 3.72136 4.01892 4.31900 4.41461 4.58649 4.60932 4.69005 4.76453 5.03309 5.03900 5.10241 5.15423 5.21387 5.22483 5.28284 5.45816 5.50394 5.54414 5.64581 5.69671 5.87875 5.92907 6.12138 6.27590 6.33152 6.48508 6.54923 6.62976 6.66441 6.69335 7.06740 7.16476 7.57317 7.68994 8.14241 8.39499 9.50801 10.08136 10.42662 11.43354 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021437 B = 0.002154 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.833198 B =12998.767853 C =13837.065228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.077 3.923 3 C -0.170 4.170 4 O -0.289 6.289 5 C 0.297 3.703 6 C 0.046 3.954 7 N -0.374 5.374 8 C -0.017 4.017 9 C 0.580 3.420 10 O -0.536 6.536 11 N -0.684 5.684 12 C 0.113 3.887 13 H 0.099 0.901 14 C -0.175 4.175 15 C 0.166 3.834 16 H 0.075 0.925 17 N -0.712 5.712 18 C -0.244 4.244 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.159 4.159 27 C 0.158 3.842 28 N -0.502 5.502 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.184 0.816 37 H 0.411 0.589 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.847 11.173 -13.764 30.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 C -0.228 4.228 4 O -0.194 6.194 5 C 0.114 3.886 6 C -0.121 4.121 7 N -0.092 5.092 8 C -0.156 4.156 9 C 0.364 3.636 10 O -0.413 6.413 11 N -0.333 5.333 12 C 0.008 3.992 13 H 0.117 0.883 14 C -0.217 4.217 15 C 0.054 3.946 16 H 0.093 0.907 17 N -0.349 5.349 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.198 4.198 27 C -0.001 4.001 28 N -0.231 5.231 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.201 0.799 37 H 0.247 0.753 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.220 0.780 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -24.519 11.286 -14.113 30.459 hybrid contribution 0.228 0.316 1.029 1.100 sum -24.291 11.602 -13.084 29.931 Atomic orbital electron populations 1.21920 0.92297 1.03265 1.03330 1.22523 0.94906 0.92972 0.87507 1.22234 1.02234 0.95261 1.03024 1.86315 1.30485 1.63381 1.39172 1.21299 0.86695 0.89461 0.91168 1.22994 0.93324 0.97019 0.98802 1.68385 1.04718 1.12381 1.23677 1.22020 0.98241 1.03512 0.91783 1.17415 0.83142 0.78821 0.84227 1.90803 1.60156 1.61755 1.28536 1.45553 1.22140 1.51413 1.14210 1.21918 0.82853 0.94365 1.00090 0.88342 1.24314 0.97604 1.00044 0.99778 1.21631 0.90707 0.92551 0.89721 0.90737 1.42394 1.30789 1.42052 1.19701 1.19299 1.09652 1.13872 0.94706 0.91099 1.24771 0.98335 0.98798 0.99015 1.69656 1.20302 1.29281 1.38727 0.86184 0.77315 0.78567 0.84084 1.21686 1.21767 1.20747 1.23862 1.01492 0.97317 0.97177 1.23541 0.89140 0.87857 0.99560 1.68201 1.09068 1.21560 1.24297 0.91358 0.90188 0.91634 0.89014 0.91912 0.90710 0.91673 0.79871 0.75325 0.89405 0.92360 0.78003 0.93453 0.91616 0.88871 0.79599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.56 37.15 0.36 -0.33 16 2 C 0.08 0.51 3.11 -26.73 -0.08 0.42 16 3 C -0.17 -1.01 9.53 37.16 0.35 -0.66 16 4 O -0.29 -2.42 9.76 -18.15 -0.18 -2.60 16 5 C 0.30 2.81 7.47 -16.71 -0.12 2.69 16 6 C 0.05 0.42 11.18 -17.16 -0.19 0.23 16 7 N -0.37 -4.15 9.70 -9.48 -0.09 -4.24 16 8 C -0.02 -0.20 6.74 -82.88 -0.56 -0.76 16 9 C 0.58 8.17 7.80 -12.30 -0.10 8.07 16 10 O -0.54 -8.79 15.93 5.32 0.08 -8.71 16 11 N -0.68 -9.44 5.25 -53.94 -0.28 -9.72 16 12 C 0.11 1.72 4.32 -67.12 -0.29 1.43 16 13 H 0.10 1.53 7.46 -51.93 -0.39 1.14 16 14 C -0.18 -3.09 7.68 -25.92 -0.20 -3.29 16 15 C 0.17 3.21 4.35 -67.12 -0.29 2.92 16 16 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 17 N -0.71 -17.58 5.40 -52.64 -0.28 -17.87 16 18 C -0.24 -6.73 9.97 -15.06 -0.15 -6.88 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 22 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 26 C -0.16 -2.52 7.58 -25.92 -0.20 -2.72 16 27 C 0.16 1.66 10.76 -17.02 -0.18 1.48 16 28 N -0.50 -5.04 8.80 -12.76 -0.11 -5.15 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.66 7.00 -51.92 -0.36 0.30 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.41 5.24 8.04 -40.82 -0.33 4.91 16 38 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.39 10.09 7.92 -40.82 -0.32 9.77 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.09 1.50 8.12 -51.93 -0.42 1.07 16 44 H 0.19 1.72 7.64 -52.48 -0.40 1.32 16 LS Contribution 376.11 15.07 5.67 5.67 Total: -1.00 -31.97 376.11 -7.67 -39.64 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -6.42 Total: 10.80 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.75 Total: 2.13 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: -0.05 Total: -64.23 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.09 Total: -11.30 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.97 -7.67 -39.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020152460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.448 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds