Wall clock time and date at job start Tue Mar 31 2020 13:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47402 * 2 1 4 4 O 1.42902 * 109.47012 * 120.00278 * 2 1 3 5 5 C 1.35486 * 116.99999 * 150.00102 * 4 2 1 6 6 C 1.39633 * 119.97259 * 179.97438 * 5 4 2 7 7 N 1.31535 * 120.03726 * 179.72128 * 6 5 4 8 8 C 1.33214 * 119.98633 * 0.25941 * 7 6 5 9 9 C 1.47905 * 120.02178 * 179.97438 * 8 7 6 10 10 O 1.21553 * 119.99977 * 179.97438 * 9 8 7 11 11 N 1.34771 * 119.99998 * 359.97438 * 9 8 7 12 12 C 1.46505 * 120.00159 * 180.02562 * 11 9 8 13 13 H 1.09002 * 112.84351 * 336.19921 * 12 11 9 14 14 C 1.53780 * 113.61458 * 107.49873 * 12 11 9 15 15 C 1.53783 * 87.08155 * 89.11951 * 14 12 11 16 16 H 1.09000 * 113.61079 * 270.88616 * 15 14 12 17 17 N 1.46493 * 113.69056 * 139.99024 * 15 14 12 18 18 C 1.36937 * 119.99914 * 107.46642 * 17 15 14 19 19 H 1.08002 * 120.00038 * 0.02562 * 18 17 15 20 20 C 1.38818 * 120.00147 * 179.97438 * 18 17 15 21 21 N 1.31618 * 119.99948 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99923 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 90.00687 * 22 20 18 24 24 H 1.48503 * 109.47009 * 210.00225 * 22 20 18 25 25 H 1.48496 * 109.47720 * 330.00457 * 22 20 18 26 26 C 1.53775 * 113.61790 * 204.99998 * 12 11 9 27 27 C 1.39389 * 119.95322 * 359.97438 * 8 7 6 28 28 N 1.32077 * 119.96288 * 0.02562 * 27 8 7 29 29 H 1.09003 * 109.47653 * 299.99947 * 1 2 3 30 30 H 1.09006 * 109.47097 * 60.00003 * 1 2 3 31 31 H 1.09004 * 109.47508 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47303 * 239.99728 * 2 1 3 33 33 H 1.08996 * 109.47085 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46995 * 300.00533 * 3 2 1 35 35 H 1.09001 * 109.46547 * 59.99988 * 3 2 1 36 36 H 1.08002 * 119.98596 * 0.02562 * 6 5 4 37 37 H 0.97001 * 120.00575 * 359.97438 * 11 9 8 38 38 H 1.08999 * 113.61473 * 203.66987 * 14 12 11 39 39 H 1.09003 * 113.61302 * 334.57102 * 14 12 11 40 40 H 0.97002 * 120.00283 * 287.46649 * 17 15 14 41 41 H 0.96993 * 120.00039 * 179.97438 * 21 20 18 42 42 H 1.08998 * 113.61161 * 25.42773 * 26 12 11 43 43 H 1.08997 * 113.62035 * 156.33185 * 26 12 11 44 44 H 1.08003 * 120.01638 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1970 -1.3121 1.0654 6 6 3.7211 -1.9900 2.1679 7 7 4.8744 -2.6149 2.0693 8 6 5.5452 -2.5967 0.9185 9 6 6.8423 -3.2986 0.8070 10 8 7.4539 -3.2821 -0.2434 11 7 7.3462 -3.9564 1.8699 12 6 8.6313 -4.6511 1.7596 13 1 8.8789 -4.9225 0.7333 14 6 9.7774 -3.9488 2.5066 15 6 9.3756 -4.7759 3.7393 16 1 8.6230 -4.2931 4.3626 17 7 10.5167 -5.2763 4.5098 18 6 10.8156 -4.7249 5.7270 19 1 10.2098 -3.9213 6.1192 20 6 11.8965 -5.1994 6.4574 21 7 12.6344 -6.1789 5.9797 22 14 12.3046 -4.4466 8.1176 23 1 11.5789 -5.1803 9.1855 24 1 13.7670 -4.5413 8.3579 25 1 11.8924 -3.0201 8.1292 26 6 8.7938 -5.8083 2.7591 27 6 5.0238 -1.9158 -0.1803 28 7 3.8657 -1.2890 -0.0792 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1770 -2.0054 3.1007 37 1 6.8584 -3.9692 2.7082 38 1 10.7662 -4.1945 2.1193 39 1 9.6249 -2.8768 2.6315 40 1 11.0605 -5.9983 4.1577 41 1 13.3899 -6.5102 6.4899 42 1 7.8473 -6.2374 3.0879 43 1 9.5137 -6.5624 2.4410 44 1 5.5671 -1.9001 -1.1137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020152460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:32 Heat of formation + Delta-G solvation = -15.911648 kcal Electronic energy + Delta-G solvation = -25752.957969 eV Core-core repulsion = 21899.070535 eV Total energy + Delta-G solvation = -3853.887434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.62476 -41.13585 -39.96535 -39.09831 -35.87379 -35.46129 -34.41562 -34.01203 -32.09554 -31.45133 -28.21372 -26.87569 -26.52650 -26.29132 -25.72570 -23.89217 -22.79954 -22.12698 -20.39199 -19.75237 -19.49569 -19.13456 -18.56860 -17.30935 -17.21946 -16.62380 -16.28016 -16.24404 -16.06124 -15.74308 -15.56371 -15.39161 -15.08429 -14.70971 -14.33919 -14.17278 -13.60271 -13.44379 -13.42125 -13.30394 -13.26078 -13.04617 -12.95100 -12.80771 -12.59748 -12.48723 -12.16066 -11.91363 -11.86223 -11.77616 -11.74844 -11.49035 -11.19792 -10.83685 -10.44840 -10.16984 -9.85523 -8.97619 -7.93702 -5.21918 -0.71376 -0.17250 1.48522 1.49728 1.54680 1.58115 1.61760 1.95685 2.57410 2.57882 2.78974 2.89044 3.25420 3.37526 3.68837 3.73939 3.82892 3.84792 3.94437 3.97465 4.00862 4.20613 4.32867 4.34035 4.44595 4.55858 4.69231 4.72260 4.79652 4.85361 4.91692 4.92980 5.01575 5.13613 5.19743 5.20499 5.23496 5.24091 5.51433 5.66402 5.86645 5.88511 6.28184 6.30551 6.54054 7.04277 7.34765 8.11312 8.34207 9.29369 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021437 B = 0.002154 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.833198 B =12998.767853 C =13837.065228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 C -0.167 4.167 4 O -0.289 6.289 5 C 0.301 3.699 6 C 0.051 3.949 7 N -0.384 5.384 8 C -0.034 4.034 9 C 0.582 3.418 10 O -0.563 6.563 11 N -0.680 5.680 12 C 0.132 3.868 13 H 0.101 0.899 14 C -0.171 4.171 15 C 0.152 3.848 16 H 0.079 0.921 17 N -0.726 5.726 18 C -0.243 4.243 19 H 0.077 0.923 20 C -0.077 4.077 21 N -0.969 5.969 22 Si 0.972 3.028 23 H -0.286 1.286 24 H -0.297 1.297 25 H -0.271 1.271 26 C -0.142 4.142 27 C 0.161 3.839 28 N -0.507 5.507 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.213 0.787 37 H 0.417 0.583 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.375 0.625 41 H 0.250 0.750 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.328 12.357 -13.727 32.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 C -0.224 4.224 4 O -0.193 6.193 5 C 0.117 3.883 6 C -0.117 4.117 7 N -0.102 5.102 8 C -0.172 4.172 9 C 0.368 3.632 10 O -0.442 6.442 11 N -0.330 5.330 12 C 0.026 3.974 13 H 0.119 0.881 14 C -0.213 4.213 15 C 0.042 3.958 16 H 0.097 0.903 17 N -0.363 5.363 18 C -0.375 4.375 19 H 0.095 0.905 20 C -0.269 4.269 21 N -0.619 5.619 22 Si 0.801 3.199 23 H -0.213 1.213 24 H -0.224 1.224 25 H -0.196 1.196 26 C -0.181 4.181 27 C 0.003 3.997 28 N -0.237 5.237 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.230 0.770 37 H 0.254 0.746 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.207 0.793 41 H 0.059 0.941 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -27.058 12.503 -14.100 32.974 hybrid contribution 0.819 0.054 0.953 1.258 sum -26.239 12.557 -13.147 31.922 Atomic orbital electron populations 1.21932 0.90485 1.03540 1.04404 1.22764 0.96273 0.92981 0.86576 1.22221 1.01047 0.95069 1.04091 1.86331 1.29779 1.63099 1.40134 1.21499 0.86832 0.88930 0.91055 1.23460 0.92642 0.95882 0.99733 1.68346 1.05455 1.12976 1.23376 1.21684 0.97826 1.04859 0.92795 1.17681 0.83645 0.78277 0.83616 1.90784 1.61177 1.62731 1.29467 1.45473 1.21542 1.51353 1.14649 1.21623 0.82676 0.93335 0.99723 0.88147 1.24153 0.98169 0.99675 0.99268 1.21956 0.89529 0.94320 0.90032 0.90324 1.42570 1.32238 1.41970 1.19548 1.19692 1.09079 1.13278 0.95461 0.90549 1.25566 0.98852 0.99852 1.02652 1.69809 1.20959 1.31054 1.40085 0.85162 0.76457 0.78237 0.80035 1.21293 1.22422 1.19574 1.23682 1.01980 0.96789 0.95684 1.23625 0.89231 0.87386 0.99501 1.68249 1.08940 1.21705 1.24769 0.91006 0.88394 0.91765 0.89716 0.93668 0.88987 0.91313 0.77031 0.74570 0.90574 0.92738 0.79268 0.94072 0.89739 0.88937 0.78886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.56 71.98 0.69 -0.30 16 2 C 0.07 0.79 3.11 30.59 0.10 0.89 16 3 C -0.17 -1.70 9.53 71.98 0.69 -1.01 16 4 O -0.29 -4.29 9.76 -87.86 -0.86 -5.14 16 5 C 0.30 5.18 7.47 84.92 0.63 5.81 16 6 C 0.05 0.83 11.18 85.07 0.95 1.78 16 7 N -0.38 -7.92 9.70 -183.92 -1.78 -9.70 16 8 C -0.03 -0.78 6.74 41.77 0.28 -0.50 16 9 C 0.58 15.94 7.80 86.80 0.68 16.62 16 10 O -0.56 -18.23 15.93 -3.88 -0.06 -18.29 16 11 N -0.68 -17.97 5.25 -442.85 -2.33 -20.30 16 12 C 0.13 3.88 4.32 45.51 0.20 4.08 16 13 H 0.10 3.01 7.46 -2.39 -0.02 2.99 16 14 C -0.17 -5.97 7.68 31.12 0.24 -5.73 16 15 C 0.15 5.76 4.35 45.52 0.20 5.96 16 16 H 0.08 2.92 8.10 -2.39 -0.02 2.90 16 17 N -0.73 -36.06 5.40 -320.44 -1.73 -37.79 16 18 C -0.24 -13.39 9.97 84.03 0.84 -12.56 16 19 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 20 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 21 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16 22 Si 0.97 46.08 29.55 68.60 2.03 48.11 16 23 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 24 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 26 C -0.14 -4.33 7.58 31.12 0.24 -4.09 16 27 C 0.16 3.26 10.76 84.93 0.91 4.17 16 28 N -0.51 -9.57 8.80 -307.08 -2.70 -12.28 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.06 0.46 8.14 -2.38 -0.02 0.45 16 32 H 0.08 1.10 7.00 -2.38 -0.02 1.08 16 33 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.21 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.42 10.00 8.04 -92.71 -0.75 9.26 16 38 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.38 19.97 7.92 -92.71 -0.73 19.24 16 41 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 42 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.09 2.89 8.12 -2.39 -0.02 2.87 16 44 H 0.19 3.48 7.64 -2.91 -0.02 3.46 16 Total: -1.00 -68.23 376.11 -0.50 -68.73 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.45 Total: 34.33 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 7.10 Total: 11.17 kcal Atomic # 7 Polarization: -130.65 SS G_CDS: -8.26 Total: -138.91 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.92 Total: -23.43 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -68.23 -0.50 -68.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020152460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.821 kcal (2) G-P(sol) polarization free energy of solvation -68.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds