Wall clock time and date at job start Tue Mar 31 2020 13:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 O 1.42906 * 109.46748 * 119.99818 * 2 1 3 5 5 C 1.35487 * 116.99680 * 150.00086 * 4 2 1 6 6 C 1.39626 * 119.97645 * 179.72725 * 5 4 2 7 7 N 1.31533 * 120.04016 * 179.74875 * 6 5 4 8 8 C 1.33208 * 119.98503 * 0.52308 * 7 6 5 9 9 C 1.47911 * 120.02158 * 179.70417 * 8 7 6 10 10 O 1.21546 * 120.00036 * 180.02562 * 9 8 7 11 11 N 1.34775 * 120.00130 * 0.02562 * 9 8 7 12 12 C 1.46492 * 120.00159 * 179.97438 * 11 9 8 13 13 H 1.08998 * 112.85263 * 25.33582 * 12 11 9 14 14 C 1.53789 * 113.61470 * 156.53093 * 12 11 9 15 15 C 1.53780 * 87.08078 * 139.98280 * 14 12 11 16 16 H 1.08995 * 113.61786 * 89.11397 * 15 14 12 17 17 N 1.46498 * 113.61358 * 219.93582 * 15 14 12 18 18 C 1.36937 * 120.00310 * 204.99948 * 17 15 14 19 19 H 1.08008 * 119.99442 * 359.97438 * 18 17 15 20 20 C 1.38811 * 120.00675 * 179.97438 * 18 17 15 21 21 N 1.31622 * 119.99423 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00575 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46746 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47324 * 119.99711 * 22 20 18 25 25 H 1.48496 * 109.47448 * 240.00439 * 22 20 18 26 26 C 1.53787 * 113.61625 * 254.13831 * 12 11 9 27 27 C 1.39394 * 119.95543 * 359.73161 * 8 7 6 28 28 N 1.32078 * 119.96045 * 359.97438 * 27 8 7 29 29 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 32 32 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 35 35 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 36 36 H 1.08005 * 119.97592 * 0.02562 * 6 5 4 37 37 H 0.97002 * 119.99444 * 0.02562 * 11 9 8 38 38 H 1.08998 * 113.61275 * 254.53107 * 14 12 11 39 39 H 1.08993 * 113.61504 * 25.35266 * 14 12 11 40 40 H 0.97000 * 119.99762 * 24.99893 * 17 15 14 41 41 H 0.96998 * 119.99791 * 179.97438 * 21 20 18 42 42 H 1.08998 * 113.61164 * 334.56401 * 26 12 11 43 43 H 1.08996 * 113.61187 * 105.46728 * 26 12 11 44 44 H 1.08002 * 120.01740 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.1970 -1.3121 1.0655 6 6 3.7237 -1.9855 2.1694 7 7 4.8772 -2.6099 2.0710 8 6 5.5484 -2.5911 0.9206 9 6 6.8487 -3.2875 0.8109 10 8 7.4610 -3.2696 -0.2389 11 7 7.3546 -3.9418 1.8750 12 6 8.6422 -4.6320 1.7663 13 1 9.2840 -4.2112 0.9923 14 6 9.3523 -4.8274 3.1163 15 6 9.7511 -6.2255 2.6149 16 1 10.6963 -6.2416 2.0724 17 7 9.6684 -7.2639 3.6449 18 6 10.4365 -8.3930 3.5421 19 1 11.1029 -8.5180 2.7014 20 6 10.3586 -9.3768 4.5183 21 7 9.5468 -9.2241 5.5431 22 14 11.4057 -10.9172 4.3777 23 1 12.2276 -10.8459 3.1429 24 1 12.2980 -11.0189 5.5604 25 1 10.5247 -12.1110 4.3182 26 6 8.5165 -6.1631 1.6971 27 6 5.0248 -1.9142 -0.1798 28 7 3.8636 -1.2927 -0.0805 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1814 -1.9975 3.1034 37 1 6.8657 -3.9563 2.7127 38 1 10.2001 -4.1585 3.2646 39 1 8.6730 -4.8451 3.9685 40 1 9.0696 -7.1518 4.3997 41 1 9.4921 -9.9117 6.2251 42 1 7.6081 -6.5480 2.1605 43 1 8.6905 -6.5709 0.7014 44 1 5.5683 -1.8979 -1.1129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022080674.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:37 Heat of formation + Delta-G solvation = 5.556589 kcal Electronic energy + Delta-G solvation = -25601.238764 eV Core-core repulsion = 21748.282263 eV Total energy + Delta-G solvation = -3852.956501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.81936 -39.95825 -39.05979 -37.82427 -34.81342 -34.00465 -33.85340 -32.66229 -31.04057 -29.79813 -27.80357 -25.83343 -25.29402 -25.12028 -24.22025 -22.49250 -21.91495 -20.62958 -19.50396 -19.07376 -18.37903 -17.76700 -17.04524 -16.50927 -16.15774 -15.49847 -15.39645 -15.23127 -14.92002 -14.52863 -14.44186 -14.24177 -13.86043 -13.50829 -13.04831 -12.99794 -12.90885 -12.82975 -12.55652 -12.24207 -12.12213 -11.90205 -11.78338 -11.34455 -11.27280 -11.22898 -10.94057 -10.72844 -10.50125 -10.37968 -10.21501 -10.00017 -9.68598 -9.51487 -9.19922 -8.91094 -8.74637 -6.97923 -5.79720 -3.08546 0.13059 0.60199 2.29602 2.55346 3.06333 3.42666 3.46877 3.48781 3.50793 3.54261 3.74027 4.03081 4.32097 4.41579 4.57986 4.63205 4.69323 4.77382 5.03245 5.03643 5.11310 5.15863 5.22392 5.23220 5.28175 5.37793 5.47737 5.54815 5.64472 5.69528 5.86740 5.93859 6.11161 6.27045 6.32318 6.47214 6.55475 6.61495 6.66452 6.72903 7.05010 7.18261 7.60624 7.69901 8.15797 8.38742 9.50175 10.06992 10.41505 11.42691 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030477 B = 0.001957 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.505733 B =14306.753709 C =14797.243030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.077 3.923 3 C -0.170 4.170 4 O -0.289 6.289 5 C 0.297 3.703 6 C 0.045 3.955 7 N -0.375 5.375 8 C -0.017 4.017 9 C 0.578 3.422 10 O -0.538 6.538 11 N -0.691 5.691 12 C 0.115 3.885 13 H 0.111 0.889 14 C -0.158 4.158 15 C 0.169 3.831 16 H 0.081 0.919 17 N -0.710 5.710 18 C -0.244 4.244 19 H 0.073 0.927 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.292 1.292 26 C -0.176 4.176 27 C 0.158 3.842 28 N -0.502 5.502 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.184 0.816 37 H 0.410 0.590 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.302 22.078 -10.297 29.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 C -0.227 4.227 4 O -0.194 6.194 5 C 0.113 3.887 6 C -0.122 4.122 7 N -0.092 5.092 8 C -0.156 4.156 9 C 0.361 3.639 10 O -0.415 6.415 11 N -0.340 5.340 12 C 0.011 3.989 13 H 0.129 0.871 14 C -0.197 4.197 15 C 0.056 3.944 16 H 0.099 0.901 17 N -0.348 5.348 18 C -0.375 4.375 19 H 0.091 0.909 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.218 4.218 27 C -0.002 4.002 28 N -0.231 5.231 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.201 0.799 37 H 0.246 0.754 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -16.874 21.937 -10.864 29.732 hybrid contribution -0.087 -0.738 0.458 0.873 sum -16.961 21.200 -10.405 29.075 Atomic orbital electron populations 1.21920 0.92287 1.03308 1.03305 1.22524 0.94930 0.92935 0.87546 1.22230 1.02174 0.95290 1.03009 1.86315 1.30512 1.63386 1.39150 1.21296 0.86702 0.89524 0.91154 1.22990 0.93361 0.97020 0.98806 1.68380 1.04859 1.12074 1.23887 1.22075 0.98334 1.03411 0.91773 1.17477 0.83278 0.78687 0.84440 1.90796 1.60084 1.62219 1.28370 1.45921 1.22423 1.51506 1.14117 1.22612 0.83723 0.93032 0.99563 0.87101 1.23862 0.99967 0.99958 0.95954 1.21377 0.95265 0.87134 0.90593 0.90144 1.42363 1.49545 1.18017 1.24830 1.19369 1.16876 0.95413 1.05820 0.90898 1.24773 0.99966 0.99017 0.97188 1.69672 1.40598 1.35074 1.12679 0.86102 0.79553 0.83212 0.77235 1.20475 1.21852 1.21871 1.24377 1.02668 0.93197 1.01580 1.23546 0.89109 0.87964 0.99547 1.68200 1.09053 1.21615 1.24267 0.90185 0.91601 0.91378 0.88995 0.91960 0.90706 0.91701 0.79894 0.75436 0.91355 0.89807 0.78053 0.93508 0.90120 0.92091 0.79618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.56 37.16 0.36 -0.35 16 2 C 0.08 0.51 3.11 -26.73 -0.08 0.43 16 3 C -0.17 -0.98 9.53 37.16 0.35 -0.63 16 4 O -0.29 -2.44 9.77 -18.15 -0.18 -2.62 16 5 C 0.30 2.83 7.47 -16.71 -0.12 2.71 16 6 C 0.05 0.42 11.18 -17.16 -0.19 0.23 16 7 N -0.37 -4.20 9.70 -9.48 -0.09 -4.29 16 8 C -0.02 -0.20 6.74 -82.88 -0.56 -0.76 16 9 C 0.58 8.18 7.80 -12.30 -0.10 8.09 16 10 O -0.54 -8.85 15.95 5.32 0.08 -8.77 16 11 N -0.69 -9.53 5.35 -53.94 -0.29 -9.82 16 12 C 0.12 1.73 4.21 -67.11 -0.28 1.45 16 13 H 0.11 1.69 7.50 -51.93 -0.39 1.30 16 14 C -0.16 -2.48 7.58 -25.91 -0.20 -2.68 16 15 C 0.17 3.28 4.48 -67.03 -0.30 2.98 16 16 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 17 N -0.71 -17.50 5.41 -52.55 -0.28 -17.78 16 18 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 19 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 22 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 C -0.18 -3.09 7.70 -25.82 -0.20 -3.29 16 27 C 0.16 1.68 10.76 -17.02 -0.18 1.49 16 28 N -0.50 -5.10 8.80 -12.76 -0.11 -5.21 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.68 6.99 -51.93 -0.36 0.32 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.18 1.17 8.06 -52.48 -0.42 0.75 16 37 H 0.41 5.21 8.05 -40.82 -0.33 4.88 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.32 8.09 -51.93 -0.42 0.90 16 40 H 0.39 10.04 7.93 -40.82 -0.32 9.71 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.19 1.74 7.64 -52.49 -0.40 1.34 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -31.92 376.28 -7.67 -39.59 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -6.42 Total: 10.83 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -1.75 Total: 2.33 kcal Atomic # 7 Polarization: -64.24 SS G_CDS: -0.05 Total: -64.30 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.09 Total: -11.39 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.92 -7.67 -39.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022080674.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.143 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds