Wall clock time and date at job start Tue Mar 31 2020 12:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47271 * 2 1 4 4 N 1.46497 * 109.46850 * 120.00140 * 2 1 3 5 5 C 1.34776 * 120.00041 * 274.99865 * 4 2 1 6 6 O 1.21543 * 119.99982 * 359.97438 * 5 4 2 7 7 C 1.47932 * 119.99984 * 180.27693 * 5 4 2 8 8 C 1.39982 * 120.11548 * 179.44582 * 7 5 4 9 9 C 1.38416 * 117.97015 * 179.73251 * 8 7 5 10 10 C 1.39357 * 118.03449 * 0.53784 * 9 8 7 11 11 O 1.35515 * 120.03014 * 179.74734 * 10 9 8 12 12 N 1.32671 * 119.94242 * 359.71948 * 10 9 8 13 13 N 1.28358 * 122.19863 * 0.02562 * 12 10 9 14 14 C 1.52999 * 109.46998 * 240.00187 * 2 1 3 15 15 H 1.09002 * 109.49882 * 300.05984 * 14 2 1 16 16 C 1.53039 * 109.50313 * 60.16471 * 14 2 1 17 17 C 1.53036 * 109.54037 * 181.31889 * 16 14 2 18 18 C 1.53194 * 109.30969 * 298.63078 * 17 16 14 19 19 N 1.46922 * 108.77763 * 54.63952 * 18 17 16 20 20 C 1.36931 * 120.63456 * 126.36679 * 19 18 17 21 21 H 1.07996 * 120.00000 * 331.84706 * 20 19 18 22 22 C 1.38813 * 120.00028 * 151.85024 * 20 19 18 23 23 N 1.31614 * 120.00139 * 343.06465 * 22 20 19 24 24 Si 1.86806 * 119.99850 * 163.06959 * 22 20 19 25 25 H 1.48494 * 109.47202 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46967 * 119.99643 * 24 22 20 27 27 H 1.48494 * 109.46875 * 239.99696 * 24 22 20 28 28 C 1.46932 * 118.73589 * 306.39243 * 19 18 17 29 29 H 1.09000 * 109.47271 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47116 * 300.00327 * 1 2 3 31 31 H 1.08999 * 109.46503 * 59.99821 * 1 2 3 32 32 H 0.97004 * 120.00116 * 95.00102 * 4 2 1 33 33 H 1.07998 * 121.01615 * 0.02562 * 8 7 5 34 34 H 1.07998 * 120.98410 * 180.25381 * 9 8 7 35 35 H 0.96706 * 113.99691 * 269.97456 * 11 10 9 36 36 H 1.09003 * 109.45576 * 301.33560 * 16 14 2 37 37 H 1.09002 * 109.46035 * 61.29339 * 16 14 2 38 38 H 1.09005 * 109.49685 * 178.68116 * 17 16 14 39 39 H 1.08998 * 109.52613 * 58.60233 * 17 16 14 40 40 H 1.09002 * 109.58438 * 294.84642 * 18 17 16 41 41 H 1.09003 * 109.70123 * 174.49671 * 18 17 16 42 42 H 0.96999 * 120.00028 * 180.02562 * 23 22 20 43 43 H 1.09002 * 109.58424 * 293.81652 * 28 19 18 44 44 H 1.08999 * 109.58427 * 173.39908 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8584 1.1611 2.4116 7 6 2.6459 -0.7142 3.5635 8 6 2.7915 -0.0155 4.7676 9 6 3.2565 -0.7115 5.8700 10 6 3.5619 -2.0619 5.7109 11 8 4.0250 -2.7809 6.7621 12 7 3.3984 -2.6431 4.5296 13 7 2.9627 -2.0021 3.5064 14 6 2.0400 -0.7212 -1.2493 15 1 1.6760 -1.7487 -1.2503 16 6 1.5336 0.0021 -2.4993 17 6 2.0159 -0.7375 -3.7493 18 6 3.5476 -0.7380 -3.7782 19 7 4.0443 -1.3005 -2.5150 20 6 4.9301 -2.3448 -2.5168 21 1 4.9348 -3.0474 -3.3368 22 6 5.8219 -2.5001 -1.4644 23 7 6.0563 -1.4958 -0.6467 24 14 6.6893 -4.1347 -1.2089 25 1 6.2564 -5.0939 -2.2566 26 1 8.1581 -3.9348 -1.2981 27 1 6.3436 -4.6744 0.1306 28 6 3.5719 -0.7217 -1.2498 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 2.2490 -1.6318 1.1526 33 1 2.5440 1.0336 4.8357 34 1 3.3833 -0.2215 6.8240 35 1 4.9882 -2.7765 6.8477 36 1 0.4439 0.0253 -2.4889 37 1 1.9183 1.0219 -2.5096 38 1 1.6354 -0.2351 -4.6387 39 1 1.6520 -1.7647 -3.7279 40 1 3.9113 0.2833 -3.8914 41 1 3.8992 -1.3456 -4.6120 42 1 6.6798 -1.6043 0.0884 43 1 3.9377 0.3010 -1.1569 44 1 3.9376 -1.3199 -0.4153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025335837.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:03 Heat of formation + Delta-G solvation = 0.175071 kcal Electronic energy + Delta-G solvation = -27584.708434 eV Core-core repulsion = 23731.518573 eV Total energy + Delta-G solvation = -3853.189861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.42852 -39.62680 -38.03512 -37.62316 -35.20336 -33.41585 -33.11466 -32.14353 -30.84073 -29.75189 -28.67474 -25.67277 -25.14600 -24.68807 -23.31703 -22.01266 -21.16791 -20.22475 -19.43589 -19.22995 -18.15338 -17.65016 -16.70357 -16.38297 -15.77318 -15.20761 -15.05229 -14.71324 -14.27035 -14.12078 -13.96441 -13.60746 -13.50744 -13.26266 -13.14459 -12.65488 -12.56854 -12.44968 -12.16860 -11.99108 -11.92290 -11.42550 -11.01691 -10.88977 -10.68046 -10.58964 -10.41256 -10.17709 -10.08436 -10.06340 -9.93633 -9.86019 -9.73272 -9.55958 -9.39792 -8.77775 -8.44563 -6.63713 -5.76362 -3.18986 0.18730 0.50013 2.53391 2.98981 3.21838 3.40101 3.48566 3.49641 3.53291 3.88468 4.34713 4.44046 4.51859 4.67702 4.74811 5.04779 5.32930 5.34287 5.48500 5.52089 5.54241 5.59059 5.62491 5.70414 5.78432 5.82479 6.07261 6.14772 6.18592 6.31686 6.41348 6.45400 6.51495 6.67578 6.71916 6.83939 6.89747 6.96337 7.03659 7.36476 7.66249 7.68116 7.82357 8.23982 8.36945 8.47067 9.23691 9.87388 10.44359 11.31236 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010512 B = 0.004836 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.995190 B = 5788.102864 C = 7966.404836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.088 0.912 4 N -0.687 5.687 5 C 0.579 3.421 6 O -0.537 6.537 7 C 0.021 3.979 8 C -0.049 4.049 9 C -0.143 4.143 10 C 0.269 3.731 11 O -0.474 6.474 12 N -0.252 5.252 13 N -0.174 5.174 14 C -0.122 4.122 15 H 0.070 0.930 16 C -0.101 4.101 17 C -0.133 4.133 18 C 0.143 3.857 19 N -0.592 5.592 20 C -0.253 4.253 21 H 0.065 0.935 22 C 0.005 3.995 23 N -0.899 5.899 24 Si 0.897 3.103 25 H -0.278 1.278 26 H -0.292 1.292 27 H -0.286 1.286 28 C 0.179 3.821 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.414 0.586 33 H 0.167 0.833 34 H 0.162 0.838 35 H 0.409 0.591 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.016 0.984 41 H 0.052 0.948 42 H 0.251 0.749 43 H 0.016 0.984 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.469 3.386 10.456 13.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 H 0.106 0.894 4 N -0.337 5.337 5 C 0.361 3.639 6 O -0.413 6.413 7 C -0.126 4.126 8 C -0.078 4.078 9 C -0.172 4.172 10 C 0.084 3.916 11 O -0.281 6.281 12 N -0.106 5.106 13 N -0.023 5.023 14 C -0.143 4.143 15 H 0.088 0.912 16 C -0.139 4.139 17 C -0.172 4.172 18 C 0.017 3.983 19 N -0.314 5.314 20 C -0.382 4.382 21 H 0.083 0.917 22 C -0.194 4.194 23 N -0.543 5.543 24 Si 0.727 3.273 25 H -0.203 1.203 26 H -0.219 1.219 27 H -0.213 1.213 28 C 0.053 3.947 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.251 0.749 33 H 0.185 0.815 34 H 0.179 0.821 35 H 0.269 0.731 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.034 0.966 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.980 2.727 9.874 13.623 hybrid contribution 1.156 0.023 1.162 1.639 sum -7.824 2.750 11.036 13.805 Atomic orbital electron populations 1.22220 0.95664 1.02002 1.02111 1.21114 0.93266 0.97612 0.83622 0.89422 1.45936 1.64006 1.15059 1.08680 1.17356 0.78268 0.85928 0.82364 1.90778 1.51316 1.14642 1.84596 1.23030 1.00183 0.93294 0.96143 1.22410 0.92287 1.02616 0.90482 1.22538 0.99935 0.93661 1.01111 1.21074 0.94598 0.88146 0.87742 1.84711 1.28422 1.72583 1.42343 1.73147 1.10843 1.30470 0.96105 1.73358 1.04056 1.05991 1.18887 1.22177 1.01477 0.98823 0.91784 0.91159 1.21435 0.98795 0.98993 0.94682 1.21995 0.99101 0.99879 0.96265 1.20927 0.91034 0.96316 0.90063 1.44033 1.49968 1.37986 0.99433 1.19206 1.10277 1.01592 1.07157 0.91708 1.25019 0.97074 0.97283 1.00013 1.70042 1.36788 1.28781 1.18702 0.86304 0.79028 0.83986 0.77983 1.20256 1.21875 1.21298 1.20791 0.86189 0.97200 0.90521 0.92543 0.92668 0.91226 0.74928 0.81535 0.82068 0.73120 0.93054 0.92574 0.93142 0.92413 0.96620 0.92974 0.93857 0.96608 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.14 37.16 0.34 -1.83 16 2 C 0.15 2.39 2.16 -67.93 -0.15 2.24 16 3 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 4 N -0.69 -11.40 4.47 -54.72 -0.24 -11.65 16 5 C 0.58 9.58 7.77 -12.29 -0.10 9.49 16 6 O -0.54 -9.64 16.05 5.33 0.09 -9.55 16 7 C 0.02 0.31 6.83 -82.85 -0.57 -0.26 16 8 C -0.05 -0.56 9.72 -38.86 -0.38 -0.94 16 9 C -0.14 -1.35 10.14 -39.10 -0.40 -1.75 16 10 C 0.27 3.16 7.85 -16.77 -0.13 3.03 16 11 O -0.47 -4.39 13.56 -18.24 -0.25 -4.64 16 12 N -0.25 -3.91 11.54 30.54 0.35 -3.56 16 13 N -0.17 -2.84 10.73 33.32 0.36 -2.48 16 14 C -0.12 -2.18 1.97 -90.50 -0.18 -2.36 16 15 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 16 C -0.10 -1.62 4.86 -26.69 -0.13 -1.75 16 17 C -0.13 -2.25 6.08 -26.61 -0.16 -2.42 16 18 C 0.14 2.98 6.52 -3.71 -0.02 2.96 16 19 N -0.59 -14.66 2.99 -172.32 -0.52 -15.18 16 20 C -0.25 -6.90 9.58 -15.06 -0.14 -7.04 16 21 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 22 C 0.00 0.13 4.92 -17.43 -0.09 0.05 16 23 N -0.90 -25.93 11.20 55.49 0.62 -25.30 16 24 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 C 0.18 4.14 4.34 -3.71 -0.02 4.12 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.84 6.41 -51.93 -0.33 0.51 16 32 H 0.41 7.02 7.76 -40.82 -0.32 6.70 16 33 H 0.17 1.59 7.71 -52.49 -0.40 1.18 16 34 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.41 1.73 9.06 45.56 0.41 2.14 16 36 H 0.05 0.70 6.37 -51.93 -0.33 0.37 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 2.32 5.56 -51.93 -0.29 2.03 16 LS Contribution 361.08 15.07 5.44 5.44 Total: -1.00 -33.38 361.08 -6.71 -40.10 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.42 Total: 6.46 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -2.11 Total: 3.56 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.57 Total: -58.17 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.16 Total: -14.19 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.38 -6.71 -40.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025335837.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.271 kcal (2) G-P(sol) polarization free energy of solvation -33.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds