Wall clock time and date at job start Tue Mar 31 2020 12:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47271 * 2 1 4 4 N 1.46497 * 109.46850 * 120.00140 * 2 1 3 5 5 C 1.34776 * 120.00041 * 274.99865 * 4 2 1 6 6 O 1.21543 * 119.99982 * 359.97438 * 5 4 2 7 7 C 1.47932 * 119.99984 * 180.27693 * 5 4 2 8 8 C 1.39982 * 120.11548 * 179.44582 * 7 5 4 9 9 C 1.38416 * 117.97015 * 179.73251 * 8 7 5 10 10 C 1.39357 * 118.03449 * 0.53784 * 9 8 7 11 11 O 1.35515 * 120.03014 * 179.74734 * 10 9 8 12 12 N 1.32671 * 119.94242 * 359.71948 * 10 9 8 13 13 N 1.28358 * 122.19863 * 0.02562 * 12 10 9 14 14 C 1.52999 * 109.46998 * 240.00187 * 2 1 3 15 15 H 1.09002 * 109.49882 * 300.05984 * 14 2 1 16 16 C 1.53039 * 109.50313 * 60.16471 * 14 2 1 17 17 C 1.53036 * 109.54037 * 181.31889 * 16 14 2 18 18 C 1.53194 * 109.30969 * 298.63078 * 17 16 14 19 19 N 1.46922 * 108.77763 * 54.63952 * 18 17 16 20 20 C 1.36931 * 120.63456 * 126.36679 * 19 18 17 21 21 H 1.07996 * 120.00000 * 331.84706 * 20 19 18 22 22 C 1.38813 * 120.00028 * 151.85024 * 20 19 18 23 23 N 1.31614 * 120.00139 * 343.06465 * 22 20 19 24 24 Si 1.86806 * 119.99850 * 163.06959 * 22 20 19 25 25 H 1.48494 * 109.47202 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46967 * 119.99643 * 24 22 20 27 27 H 1.48494 * 109.46875 * 239.99696 * 24 22 20 28 28 C 1.46932 * 118.73589 * 306.39243 * 19 18 17 29 29 H 1.09000 * 109.47271 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47116 * 300.00327 * 1 2 3 31 31 H 1.08999 * 109.46503 * 59.99821 * 1 2 3 32 32 H 0.97004 * 120.00116 * 95.00102 * 4 2 1 33 33 H 1.07998 * 121.01615 * 0.02562 * 8 7 5 34 34 H 1.07998 * 120.98410 * 180.25381 * 9 8 7 35 35 H 0.96706 * 113.99691 * 269.97456 * 11 10 9 36 36 H 1.09003 * 109.45576 * 301.33560 * 16 14 2 37 37 H 1.09002 * 109.46035 * 61.29339 * 16 14 2 38 38 H 1.09005 * 109.49685 * 178.68116 * 17 16 14 39 39 H 1.08998 * 109.52613 * 58.60233 * 17 16 14 40 40 H 1.09002 * 109.58438 * 294.84642 * 18 17 16 41 41 H 1.09003 * 109.70123 * 174.49671 * 18 17 16 42 42 H 0.96999 * 120.00028 * 180.02562 * 23 22 20 43 43 H 1.09002 * 109.58424 * 293.81652 * 28 19 18 44 44 H 1.08999 * 109.58427 * 173.39908 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8584 1.1611 2.4116 7 6 2.6459 -0.7142 3.5635 8 6 2.7915 -0.0155 4.7676 9 6 3.2565 -0.7115 5.8700 10 6 3.5619 -2.0619 5.7109 11 8 4.0250 -2.7809 6.7621 12 7 3.3984 -2.6431 4.5296 13 7 2.9627 -2.0021 3.5064 14 6 2.0400 -0.7212 -1.2493 15 1 1.6760 -1.7487 -1.2503 16 6 1.5336 0.0021 -2.4993 17 6 2.0159 -0.7375 -3.7493 18 6 3.5476 -0.7380 -3.7782 19 7 4.0443 -1.3005 -2.5150 20 6 4.9301 -2.3448 -2.5168 21 1 4.9348 -3.0474 -3.3368 22 6 5.8219 -2.5001 -1.4644 23 7 6.0563 -1.4958 -0.6467 24 14 6.6893 -4.1347 -1.2089 25 1 6.2564 -5.0939 -2.2566 26 1 8.1581 -3.9348 -1.2981 27 1 6.3436 -4.6744 0.1306 28 6 3.5719 -0.7217 -1.2498 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 2.2490 -1.6318 1.1526 33 1 2.5440 1.0336 4.8357 34 1 3.3833 -0.2215 6.8240 35 1 4.9882 -2.7765 6.8477 36 1 0.4439 0.0253 -2.4889 37 1 1.9183 1.0219 -2.5096 38 1 1.6354 -0.2351 -4.6387 39 1 1.6520 -1.7647 -3.7279 40 1 3.9113 0.2833 -3.8914 41 1 3.8992 -1.3456 -4.6120 42 1 6.6798 -1.6043 0.0884 43 1 3.9377 0.3010 -1.1569 44 1 3.9376 -1.3199 -0.4153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025335837.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:02 Heat of formation + Delta-G solvation = -26.902225 kcal Electronic energy + Delta-G solvation = -27585.882594 eV Core-core repulsion = 23731.518573 eV Total energy + Delta-G solvation = -3854.364021 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.44137 -40.90001 -39.42270 -38.60616 -36.70489 -34.86403 -34.34953 -33.40371 -32.25686 -31.44459 -30.07132 -27.16591 -26.61339 -25.68507 -24.68525 -23.69345 -22.54212 -21.56809 -20.80303 -20.24249 -19.32096 -18.78597 -18.56850 -17.29474 -17.08230 -16.90211 -16.36155 -15.95371 -15.69920 -15.40374 -15.25184 -14.98334 -14.86129 -14.65224 -14.49418 -14.10648 -14.02617 -13.70234 -13.42485 -13.35693 -12.99934 -12.96434 -12.71523 -12.65486 -12.35512 -12.10642 -11.97195 -11.69784 -11.49964 -11.47988 -11.41930 -11.11351 -11.01148 -10.94644 -10.68989 -10.54923 -10.09486 -8.65411 -7.86323 -5.31730 -0.79005 -0.40588 1.42736 1.43144 1.47067 1.55541 1.88820 2.23084 2.45459 2.50277 2.86542 3.27012 3.41822 3.56672 3.64722 3.73343 3.86790 3.97570 4.08360 4.15105 4.31324 4.40312 4.47627 4.51104 4.68167 4.72060 4.78235 4.87997 4.89482 4.89872 5.00799 5.07554 5.17384 5.21889 5.28130 5.38646 5.48520 5.51289 5.59145 5.68967 5.81244 6.34384 6.39568 6.39824 6.95147 7.16094 7.33917 7.88529 8.39712 9.18135 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010512 B = 0.004836 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.995190 B = 5788.102864 C = 7966.404836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.151 3.849 3 H 0.070 0.930 4 N -0.693 5.693 5 C 0.576 3.424 6 O -0.556 6.556 7 C 0.000 4.000 8 C -0.048 4.048 9 C -0.116 4.116 10 C 0.274 3.726 11 O -0.474 6.474 12 N -0.295 5.295 13 N -0.206 5.206 14 C -0.107 4.107 15 H 0.068 0.932 16 C -0.098 4.098 17 C -0.122 4.122 18 C 0.135 3.865 19 N -0.612 5.612 20 C -0.260 4.260 21 H 0.065 0.935 22 C -0.045 4.045 23 N -0.928 5.928 24 Si 0.957 3.043 25 H -0.265 1.265 26 H -0.294 1.294 27 H -0.292 1.292 28 C 0.190 3.810 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.410 0.590 33 H 0.187 0.813 34 H 0.210 0.790 35 H 0.431 0.569 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.009 0.991 41 H 0.050 0.950 42 H 0.245 0.755 43 H -0.019 1.019 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.016 3.518 11.188 15.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.047 3.953 3 H 0.088 0.912 4 N -0.341 5.341 5 C 0.360 3.640 6 O -0.434 6.434 7 C -0.148 4.148 8 C -0.077 4.077 9 C -0.145 4.145 10 C 0.089 3.911 11 O -0.284 6.284 12 N -0.148 5.148 13 N -0.055 5.055 14 C -0.127 4.127 15 H 0.087 0.913 16 C -0.136 4.136 17 C -0.161 4.161 18 C 0.010 3.990 19 N -0.335 5.335 20 C -0.390 4.390 21 H 0.083 0.917 22 C -0.241 4.241 23 N -0.574 5.574 24 Si 0.786 3.214 25 H -0.189 1.189 26 H -0.221 1.221 27 H -0.219 1.219 28 C 0.064 3.936 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.246 0.754 33 H 0.204 0.796 34 H 0.227 0.773 35 H 0.295 0.705 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.027 0.973 41 H 0.069 0.931 42 H 0.054 0.946 43 H -0.001 1.001 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.529 2.849 10.580 15.196 hybrid contribution 1.727 -0.006 0.986 1.988 sum -8.802 2.843 11.566 14.810 Atomic orbital electron populations 1.22133 0.92781 1.02894 1.03040 1.21086 0.95334 0.96168 0.82737 0.91169 1.46029 1.64116 1.14878 1.09087 1.17629 0.77766 0.85784 0.82830 1.90745 1.52348 1.15263 1.85070 1.22951 1.01649 0.93483 0.96738 1.22678 0.91821 1.03474 0.89694 1.22950 0.97050 0.92339 1.02181 1.21280 0.93634 0.89116 0.87091 1.84678 1.30529 1.72352 1.40869 1.72994 1.12617 1.31688 0.97508 1.73241 1.05395 1.06836 1.20004 1.21942 0.97285 0.99454 0.94056 0.91317 1.21464 1.01029 0.98221 0.92894 1.21881 0.95494 1.00548 0.98176 1.21134 0.94106 0.95472 0.88326 1.44342 1.50040 1.37885 1.01208 1.19509 1.10310 1.02260 1.06966 0.91688 1.25693 0.98228 0.99994 1.00151 1.70201 1.37619 1.30443 1.19144 0.85355 0.77656 0.80761 0.77632 1.18936 1.22105 1.21909 1.20535 0.89727 0.94172 0.89116 0.91614 0.92852 0.89133 0.75386 0.79572 0.77287 0.70487 0.89205 0.92832 0.89692 0.92423 0.97349 0.93093 0.94567 1.00132 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.14 71.98 0.66 -3.09 16 2 C 0.15 4.88 2.16 44.99 0.10 4.98 16 3 H 0.07 2.52 7.58 -2.39 -0.02 2.50 16 4 N -0.69 -23.86 4.47 -445.33 -1.99 -25.85 16 5 C 0.58 19.70 7.77 86.81 0.67 20.38 16 6 O -0.56 -20.28 16.05 -3.85 -0.06 -20.34 16 7 C 0.00 -0.01 6.83 42.00 0.29 0.28 16 8 C -0.05 -1.04 9.72 22.74 0.22 -0.82 16 9 C -0.12 -1.87 10.14 22.58 0.23 -1.65 16 10 C 0.27 6.04 7.85 84.84 0.67 6.71 16 11 O -0.47 -7.72 13.56 -88.17 -1.20 -8.92 16 12 N -0.29 -9.24 11.54 -170.02 -1.96 -11.20 16 13 N -0.21 -7.01 10.73 -48.50 -0.52 -7.53 16 14 C -0.11 -3.81 1.97 -10.72 -0.02 -3.83 16 15 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 16 C -0.10 -2.94 4.86 30.62 0.15 -2.79 16 17 C -0.12 -3.84 6.08 30.67 0.19 -3.66 16 18 C 0.13 5.60 6.52 86.36 0.56 6.16 16 19 N -0.61 -30.98 2.99 -699.09 -2.09 -33.07 16 20 C -0.26 -14.50 9.58 84.03 0.81 -13.69 16 21 H 0.07 3.55 7.88 -2.91 -0.02 3.52 16 22 C -0.04 -2.55 4.92 84.86 0.42 -2.14 16 23 N -0.93 -55.81 11.20 21.65 0.24 -55.57 16 24 Si 0.96 46.05 29.59 68.60 2.03 48.08 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 28 C 0.19 9.15 4.34 86.36 0.37 9.53 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 1.87 6.41 -2.39 -0.02 1.85 16 32 H 0.41 14.75 7.76 -92.71 -0.72 14.03 16 33 H 0.19 3.19 7.71 -2.91 -0.02 3.17 16 34 H 0.21 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.43 2.61 9.06 -74.05 -0.67 1.94 16 36 H 0.09 2.07 6.37 -2.39 -0.02 2.05 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 42 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 43 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 44 H 0.06 3.21 5.56 -2.39 -0.01 3.20 16 Total: -1.00 -76.27 361.08 -0.59 -76.86 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -0.35 Total: 21.18 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: 5.31 Total: 16.36 kcal Atomic # 7 Polarization: -126.91 SS G_CDS: -6.32 Total: -133.23 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -1.26 Total: -29.26 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -76.27 -0.59 -76.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025335837.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.957 kcal (2) G-P(sol) polarization free energy of solvation -76.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds